DK945640 |
Clone id |
YMU02A01NGRL0009_P18 |
Library |
YMU02 |
Length |
472 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_P18. 5' end sequence. |
Accession |
DK945640 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL24Contig1 |
Sequence |
ATCATGAGGTCGGGGCCAAATCTTTTGAAGCTTGCGAGGAAGGAGCAGTGCCTTGCCCTT GGCACCAAGCTGCGTTCCAAGTTTAAAATTAATTACCAGTTCTACCGAGTGTTTCCTAAT GGCGAGGTGCAGTACCTTCATCCCAAGGACGGAGTATACCCCGAGAAAGTGAACCCCGGC CGCAAGGGTGTTGGCGTGAACTTGCGCTCTATTGGAGAGAATGTAAACCCCGCCACAGTC AAGTTCACTGGCAAGAACGCTTACGATTTGTGAGGAGCATGTTGCTGACCCCTTTATGAT TCTTTCTGTAAGTGGTCTGTGGCAAGCTCATGTCTTCTATCTTTCATGATTGTAAAGTTT TTCTGTAATAGACTACTTCTTCCTCNNNANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9SA56 |
Definition |
sp|Q9SA56|PSAD2_ARATH Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana |
Align length |
90 |
Score (bit) |
165.0 |
E-value |
8.0e-41 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK945640|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0009_P18, 5' (385 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9SA56|PSAD2_ARATH Photosystem I reaction center subunit II-2... 165 8e-41 sp|Q9S7H1|PSAD1_ARATH Photosystem I reaction center subunit II-1... 165 8e-41 sp|P32869|PSAD_CUCSA Photosystem I reaction center subunit II, c... 164 1e-40 sp|P12353|PSAD_SPIOL Photosystem I reaction center subunit II, c... 164 2e-40 sp|P12372|PSAD_SOLLC Photosystem I reaction center subunit II, c... 160 2e-39 sp|P36213|PSAD_HORVU Photosystem I reaction center subunit II, c... 159 5e-39 sp|P29302|PSAD_NICSY Photosystem I reaction center subunit II, c... 156 3e-38 sp|O78502|PSAD_GUITH Photosystem I reaction center subunit II OS... 128 8e-30 sp|Q9T4W8|PSAD_CYAPA Photosystem I reaction center subunit II, c... 127 2e-29 sp|Q39615|PSAD_CHLRE Photosystem I reaction center subunit II, c... 127 2e-29 sp|Q1XDK7|PSAD_PORYE Photosystem I reaction center subunit II OS... 126 4e-29 sp|P51279|PSAD_PORPU Photosystem I reaction center subunit II OS... 126 4e-29 sp|P49481|PSAD_ODOSI Photosystem I reaction center subunit II OS... 124 2e-28 sp|O96800|PSAD_SKECO Photosystem I reaction center subunit II OS... 121 1e-27 sp|P19569|PSAD_SYNY3 Photosystem I reaction center subunit II OS... 120 2e-27 sp|Q9TLR2|PSAD_CYACA Photosystem I reaction center subunit II OS... 118 8e-27 sp|O07115|PSAD_MASLA Photosystem I reaction center subunit II OS... 112 8e-25 sp|P23076|PSAD_SYNP6 Photosystem I reaction center subunit II OS... 111 1e-24 sp|P31089|PSAD_ANAVT Photosystem I reaction center subunit II OS... 109 4e-24 sp|P0A422|PSAD_THEVL Photosystem I reaction center subunit II OS... 106 3e-23 sp|P0A420|PSAD_THEEB Photosystem I reaction center subunit II OS... 106 3e-23 sp|P0A421|PSAD_SYNEN Photosystem I reaction center subunit II OS... 106 3e-23 sp|P58573|PSAD_ANASP Photosystem I reaction center subunit II OS... 106 3e-23 sp|P56596|PSAD_NOSS8 Photosystem I reaction center subunit II OS... 102 5e-22 sp|P23808|PSAD_FREDI Photosystem I reaction center subunit II OS... 98 1e-20 sp|Q7NF26|PSAD_GLOVI Photosystem I reaction center subunit II OS... 92 6e-19 sp|Q5HW65|GLYA_CAMJR Serine hydroxymethyltransferase OS=Campylob... 33 0.58 sp|A1VYC2|GLYA_CAMJJ Serine hydroxymethyltransferase OS=Campylob... 33 0.58 sp|P24531|GLYA_CAMJE Serine hydroxymethyltransferase OS=Campylob... 33 0.58 sp|A7H4X6|GLYA_CAMJD Serine hydroxymethyltransferase OS=Campylob... 33 0.58
>sp|Q9SA56|PSAD2_ARATH Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana GN=psaD2 PE=1 SV=1 Length = 204
Score = 165 bits (417), Expect = 8e-41 Identities = 76/90 (84%), Positives = 84/90 (93%) Frame = +1
Query: 1 IMRSGPNLLKLARKEQCLALGTKLRSKFKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180 IMR GPNLLKLARKEQCLALGT+LRSK+KI YQFYRVFPNGEVQYLHPKDGVYPEK NPG Sbjct: 115 IMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPG 174
Query: 181 RKGVGVNLRSIGENVNPATVKFTGKNAYDL 270 R+GVG+N+RSIG+NV+P VKFTGK +YDL Sbjct: 175 REGVGLNMRSIGKNVSPIEVKFTGKQSYDL 204
>sp|Q9S7H1|PSAD1_ARATH Photosystem I reaction center subunit II-1, chloroplastic OS=Arabidopsis thaliana GN=psaD1 PE=1 SV=1 Length = 208
Score = 165 bits (417), Expect = 8e-41 Identities = 76/90 (84%), Positives = 84/90 (93%) Frame = +1
Query: 1 IMRSGPNLLKLARKEQCLALGTKLRSKFKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180 IMR GPNLLKLARKEQCLALGT+LRSK+KI YQFYRVFPNGEVQYLHPKDGVYPEK NPG Sbjct: 119 IMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPG 178
Query: 181 RKGVGVNLRSIGENVNPATVKFTGKNAYDL 270 R+GVG+N+RSIG+NV+P VKFTGK +YDL Sbjct: 179 REGVGLNMRSIGKNVSPIEVKFTGKQSYDL 208
>sp|P32869|PSAD_CUCSA Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=psaD PE=1 SV=1 Length = 207
Score = 164 bits (415), Expect = 1e-40 Identities = 77/90 (85%), Positives = 82/90 (91%) Frame = +1
Query: 1 IMRSGPNLLKLARKEQCLALGTKLRSKFKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180 IMR GPNLLKLARKEQCLALGT+LRSK+KI YQFYRVFPNGEVQYLHPKDGVYPEKVNPG Sbjct: 118 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 177
Query: 181 RKGVGVNLRSIGENVNPATVKFTGKNAYDL 270 R+GVG N RSIG+NV+P VKFTGK YDL Sbjct: 178 REGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207
>sp|P12353|PSAD_SPIOL Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea GN=psaD PE=1 SV=2 Length = 212
Score = 164 bits (414), Expect = 2e-40 Identities = 76/90 (84%), Positives = 84/90 (93%) Frame = +1
Query: 1 IMRSGPNLLKLARKEQCLALGTKLRSKFKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180 IMR GPNLLKLARKEQCLALGT+LRSK+KI YQFYRVFP+GEVQYLHPKDGVYPEKVNPG Sbjct: 123 IMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGVYPEKVNPG 182
Query: 181 RKGVGVNLRSIGENVNPATVKFTGKNAYDL 270 R+GVG+N+RSIG+NV+P VKFTGK YDL Sbjct: 183 RQGVGLNMRSIGKNVSPIEVKFTGKQPYDL 212
>sp|P12372|PSAD_SOLLC Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum GN=psaD PE=2 SV=1 Length = 208
Score = 160 bits (405), Expect = 2e-39 Identities = 75/90 (83%), Positives = 81/90 (90%) Frame = +1
Query: 1 IMRSGPNLLKLARKEQCLALGTKLRSKFKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180 IMR GPNLLKLARKEQCLALGT+LRSK+KINYQFYRVFPNGEVQYLHPKDGVYPEKVNPG Sbjct: 119 IMRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 178
Query: 181 RKGVGVNLRSIGENVNPATVKFTGKNAYDL 270 R+GVG N RSIG+N + VKFTGK YD+ Sbjct: 179 REGVGQNFRSIGKNKSAIEVKFTGKQVYDI 208
>sp|P36213|PSAD_HORVU Photosystem I reaction center subunit II, chloroplastic OS=Hordeum vulgare GN=psaD PE=1 SV=1 Length = 205
Score = 159 bits (401), Expect = 5e-39 Identities = 74/90 (82%), Positives = 82/90 (91%) Frame = +1
Query: 1 IMRSGPNLLKLARKEQCLALGTKLRSKFKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180 IMR GPNLLKLARKEQCLALG +LRSK+KI YQFYRVFPNGEVQYLHPKDGVYPEKVN G Sbjct: 116 IMREGPNLLKLARKEQCLALGNRLRSKYKIAYQFYRVFPNGEVQYLHPKDGVYPEKVNAG 175
Query: 181 RKGVGVNLRSIGENVNPATVKFTGKNAYDL 270 R+GVG N RSIG+NV+P VKFTGKN++D+ Sbjct: 176 RQGVGQNFRSIGKNVSPIEVKFTGKNSFDI 205
>sp|P29302|PSAD_NICSY Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris GN=psaD PE=2 SV=1 Length = 204
Score = 156 bits (395), Expect = 3e-38 Identities = 74/90 (82%), Positives = 80/90 (88%) Frame = +1
Query: 1 IMRSGPNLLKLARKEQCLALGTKLRSKFKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180 IMR G NLLKLARKEQCLALGT+LRSK+KINY+FYRVFPNGEVQYLHPKDGVYPEKVN G Sbjct: 115 IMREGANLLKLARKEQCLALGTRLRSKYKINYRFYRVFPNGEVQYLHPKDGVYPEKVNAG 174
Query: 181 RKGVGVNLRSIGENVNPATVKFTGKNAYDL 270 R+GVG N RSIG+N +P VKFTGK YDL Sbjct: 175 RQGVGQNFRSIGKNKSPIEVKFTGKQVYDL 204
>sp|O78502|PSAD_GUITH Photosystem I reaction center subunit II OS=Guillardia theta GN=psaD PE=3 SV=1 Length = 141
Score = 128 bits (322), Expect = 8e-30 Identities = 62/90 (68%), Positives = 75/90 (83%), Gaps = 1/90 (1%) Frame = +1
Query: 1 IMRSGPNLLKLARKEQCLALGTKLRSKFKI-NYQFYRVFPNGEVQYLHPKDGVYPEKVNP 177 IMR G NLL LARKEQCLALGT++++ FKI +Y+ YR+FP+GEVQYLHPKDGV+PEKVNP Sbjct: 52 IMRKGENLLYLARKEQCLALGTQVKTSFKITDYKIYRIFPSGEVQYLHPKDGVFPEKVNP 111
Query: 178 GRKGVGVNLRSIGENVNPATVKFTGKNAYD 267 GR GVG SIG+N+NPA +KFT K+ D Sbjct: 112 GRIGVGNVSHSIGKNLNPAQIKFTNKSFCD 141
>sp|Q9T4W8|PSAD_CYAPA Photosystem I reaction center subunit II, cyanelle OS=Cyanophora paradoxa GN=psaD PE=2 SV=1 Length = 220
Score = 127 bits (319), Expect = 2e-29 Identities = 59/90 (65%), Positives = 75/90 (83%), Gaps = 1/90 (1%) Frame = +1
Query: 1 IMRSGPNLLKLARKEQCLALGTKLRSKFKI-NYQFYRVFPNGEVQYLHPKDGVYPEKVNP 177 IMR+G NLL+LARKEQC+ALG +L+ KFKI +Y+ YRV+P+GEVQ+LHPKDGV+PEKVNP Sbjct: 126 IMRAGENLLRLARKEQCIALGAQLKDKFKITDYKIYRVYPSGEVQFLHPKDGVFPEKVNP 185
Query: 178 GRKGVGVNLRSIGENVNPATVKFTGKNAYD 267 GR VG N R IG+N +PA +KF G+ +D Sbjct: 186 GRVAVGSNKRRIGQNPDPAKLKFKGQETFD 215
>sp|Q39615|PSAD_CHLRE Photosystem I reaction center subunit II, chloroplastic OS=Chlamydomonas reinhardtii GN=psaD PE=1 SV=1 Length = 196
Score = 127 bits (318), Expect = 2e-29 Identities = 59/85 (69%), Positives = 69/85 (81%) Frame = +1
Query: 1 IMRSGPNLLKLARKEQCLALGTKLRSKFKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPG 180 IMR GPNLLK +KEQCLAL T+LR+KFK+ FYRVFP+G+VQYLHP DGVYPEKVN G Sbjct: 105 IMRQGPNLLKFGKKEQCLALTTQLRNKFKLTPCFYRVFPDGKVQYLHPADGVYPEKVNAG 164
Query: 181 RKGVGVNLRSIGENVNPATVKFTGK 255 R G N+R IG+NVNP VKF+G+ Sbjct: 165 RVGANQNMRRIGQNVNPIKVKFSGR 189
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A5AEB4 |
Definition |
tr|A5AEB4|A5AEB4_VITVI Putative uncharacterized protein (Chromosome chr5 scaffold_2, whole genome shotgun sequence) OS=Vitis vinifera |
Align length |
90 |
Score (bit) |
170.0 |
E-value |
4.0e-41 |
Report |
|