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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945643
Clone id YMU02A01NGRL0009_P21
Library
Length 262
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_P21. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GAAGCAGTGGTATCAACGCAGAGTGGCCATTACGGCCGGGATCCGCGTGCTGGGCTTTGA
CGCTAAGAGGCAGGTGCAGGTCTCCGGCTTCCTTGTCCAGAAGCCCTCTGTCTAAACTTT
CTTAAAGCAAGCCAATTTAGTTGGCATGAATGCCTGCTTCCCATTTCCCACTGGCGCCTA
ACAAGCTTGCTCTTATGAGCTTTTGTGTCCCAGCCACTTTGCATACATAATGAAACAACT
TCCCAGTGGTGGCTTCACTGCC
■■Homology search results ■■ -
sp_hit_id P26985
Definition sp|P26985|RBS_BATOE Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Batophora oerstedii
Align length 22
Score (bit) 35.0
E-value 0.11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945643|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_P21, 5'
         (222 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P26985|RBS_BATOE Ribulose bisphosphate carboxylase small chai...    35   0.11 
sp|Q38692|RBS6_ACECL Ribulose bisphosphate carboxylase small cha...    35   0.11 
sp|P16133|RBS5_ACECL Ribulose bisphosphate carboxylase small cha...    35   0.11 
sp|P16138|RBS5_ACEAT Ribulose bisphosphate carboxylase small cha...    35   0.11 
sp|P16132|RBS4_ACECL Ribulose bisphosphate carboxylase small cha...    35   0.11 
sp|P16137|RBS4_ACEAT Ribulose bisphosphate carboxylase small cha...    35   0.11 
sp|P16131|RBS3_ACECL Ribulose bisphosphate carboxylase small cha...    35   0.11 
sp|P16136|RBS3_ACEAT Ribulose bisphosphate carboxylase small cha...    35   0.11 
sp|P16130|RBS2_ACECL Ribulose bisphosphate carboxylase small cha...    35   0.11 
sp|P16135|RBS2_ACEAT Ribulose bisphosphate carboxylase small cha...    35   0.11 
sp|P16129|RBS1_ACECL Ribulose bisphosphate carboxylase small cha...    35   0.11 
sp|P16134|RBS1_ACEAT Ribulose bisphosphate carboxylase small cha...    35   0.11 
sp|P00873|RBS1_CHLRE Ribulose bisphosphate carboxylase small cha...    33   0.33 
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...    33   0.43 
sp|Q38693|RBS7_ACECL Ribulose bisphosphate carboxylase small cha...    33   0.43 
sp|P08474|RBS_CUCSA Ribulose bisphosphate carboxylase small chai...    33   0.57 
sp|P08475|RBS2_CHLRE Ribulose bisphosphate carboxylase small cha...    33   0.57 
sp|O22645|RBS5_FRIAG Ribulose bisphosphate carboxylase small cha...    32   0.97 
sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small cha...    32   0.97 
sp|O22572|RBS2_FRIAG Ribulose bisphosphate carboxylase small cha...    32   0.97 
sp|Q9XGX5|RBS2_AMAHP Ribulose bisphosphate carboxylase small cha...    32   0.97 
sp|Q42516|RBS1_AMAHP Ribulose bisphosphate carboxylase small cha...    32   0.97 
sp|O22077|RBS_FAGCR Ribulose bisphosphate carboxylase small chai...    32   1.3  
sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha...    32   1.3  
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha...    32   1.3  
sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small cha...    32   1.3  
sp|P19309|RBS3_LEMGI Ribulose bisphosphate carboxylase small cha...    32   1.3  
sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha...    32   1.3  
sp|P00872|RBS1_LEMGI Ribulose bisphosphate carboxylase small cha...    32   1.3  
sp|P18960|RBS_SILPR Ribulose bisphosphate carboxylase small chai...    31   1.7  

>sp|P26985|RBS_BATOE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Batophora oerstedii GN=RBCS PE=2 SV=2
          Length = 175

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 15/22 (68%), Positives = 19/22 (86%)
 Frame = +1

Query: 1   IRVLGFDAKRQVQVSGFLVQKP 66
           IR++ FDA RQVQ+SGFLV +P
Sbjct: 140 IRLVCFDANRQVQISGFLVHRP 161


>sp|Q38692|RBS6_ACECL Ribulose bisphosphate carboxylase small chain
           6, chloroplastic OS=Acetabularia cliftonii GN=RBCS-6
           PE=3 SV=1
          Length = 182

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 15/22 (68%), Positives = 19/22 (86%)
 Frame = +1

Query: 1   IRVLGFDAKRQVQVSGFLVQKP 66
           IR++ FDA RQVQ+SGFLV +P
Sbjct: 147 IRLVCFDANRQVQISGFLVHRP 168


>sp|P16133|RBS5_ACECL Ribulose bisphosphate carboxylase small chain
           5, chloroplastic OS=Acetabularia cliftonii GN=RBCS-5
           PE=2 SV=1
          Length = 184

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 15/22 (68%), Positives = 19/22 (86%)
 Frame = +1

Query: 1   IRVLGFDAKRQVQVSGFLVQKP 66
           IR++ FDA RQVQ+SGFLV +P
Sbjct: 149 IRLVCFDANRQVQISGFLVHRP 170


>sp|P16138|RBS5_ACEAT Ribulose bisphosphate carboxylase small chain
           5, chloroplastic OS=Acetabularia acetabulum GN=RBCS-5
           PE=2 SV=1
          Length = 183

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 15/22 (68%), Positives = 19/22 (86%)
 Frame = +1

Query: 1   IRVLGFDAKRQVQVSGFLVQKP 66
           IR++ FDA RQVQ+SGFLV +P
Sbjct: 148 IRLVCFDANRQVQISGFLVHRP 169


>sp|P16132|RBS4_ACECL Ribulose bisphosphate carboxylase small chain
           4, chloroplastic OS=Acetabularia cliftonii GN=RBCS-4
           PE=2 SV=1
          Length = 182

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 15/22 (68%), Positives = 19/22 (86%)
 Frame = +1

Query: 1   IRVLGFDAKRQVQVSGFLVQKP 66
           IR++ FDA RQVQ+SGFLV +P
Sbjct: 147 IRLVCFDANRQVQISGFLVHRP 168


>sp|P16137|RBS4_ACEAT Ribulose bisphosphate carboxylase small chain
           4, chloroplastic OS=Acetabularia acetabulum GN=RBCS-4
           PE=2 SV=1
          Length = 182

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 15/22 (68%), Positives = 19/22 (86%)
 Frame = +1

Query: 1   IRVLGFDAKRQVQVSGFLVQKP 66
           IR++ FDA RQVQ+SGFLV +P
Sbjct: 147 IRLVCFDANRQVQISGFLVHRP 168


>sp|P16131|RBS3_ACECL Ribulose bisphosphate carboxylase small chain
           3, chloroplastic OS=Acetabularia cliftonii GN=RBCS-3
           PE=2 SV=1
          Length = 183

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 15/22 (68%), Positives = 19/22 (86%)
 Frame = +1

Query: 1   IRVLGFDAKRQVQVSGFLVQKP 66
           IR++ FDA RQVQ+SGFLV +P
Sbjct: 148 IRLVCFDANRQVQISGFLVHRP 169


>sp|P16136|RBS3_ACEAT Ribulose bisphosphate carboxylase small chain
           3, chloroplastic OS=Acetabularia acetabulum GN=RBCS-3
           PE=2 SV=1
          Length = 182

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 15/22 (68%), Positives = 19/22 (86%)
 Frame = +1

Query: 1   IRVLGFDAKRQVQVSGFLVQKP 66
           IR++ FDA RQVQ+SGFLV +P
Sbjct: 147 IRLVCFDANRQVQISGFLVHRP 168


>sp|P16130|RBS2_ACECL Ribulose bisphosphate carboxylase small chain
           2 (Fragment) OS=Acetabularia cliftonii GN=RBCS-2 PE=3
           SV=1
          Length = 86

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 15/22 (68%), Positives = 19/22 (86%)
 Frame = +1

Query: 1   IRVLGFDAKRQVQVSGFLVQKP 66
           IR++ FDA RQVQ+SGFLV +P
Sbjct: 51  IRLVCFDANRQVQISGFLVHRP 72


>sp|P16135|RBS2_ACEAT Ribulose bisphosphate carboxylase small chain
           2, chloroplastic (Fragment) OS=Acetabularia acetabulum
           GN=RBCS-2 PE=2 SV=1
          Length = 173

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 15/22 (68%), Positives = 19/22 (86%)
 Frame = +1

Query: 1   IRVLGFDAKRQVQVSGFLVQKP 66
           IR++ FDA RQVQ+SGFLV +P
Sbjct: 138 IRLVCFDANRQVQISGFLVHRP 159
tr_hit_id Q43109
Definition tr|Q43109|Q43109_PTEVI Ribulose bisphosphate carboxylase small chain (Fragment) OS=Pteris vittata
Align length 23
Score (bit) 45.4
E-value 0.001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945643|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_P21, 5'
         (222 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43109|Q43109_PTEVI Ribulose bisphosphate carboxylase small c...    45   0.001
tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...    45   0.002
tr|Q43108|Q43108_PTEVI Ribulose bisphosphate carboxylase small c...    44   0.005
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c...    39   0.17 
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c...    39   0.17 
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c...    39   0.17 
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...    38   0.22 
tr|A9TYN7|A9TYN7_PHYPA Ribulose bisphosphate carboxylase small c...    38   0.22 
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c...    38   0.22 
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c...    38   0.22 
tr|Q68BK3|Q68BK3_NANBA Ribulose bisphosphate carboxylase small c...    36   1.1  
tr|Q7XYK6|Q7XYK6_BIGNA Ribulose-1,5-bisphosphate carboxylase/oxy...    35   1.9  
tr|Q33BU5|Q33BU5_CHLPY Ribulose bisphosphate carboxylase small c...    35   1.9  
tr|Q39387|Q39387_BATOE Ribulose bisphosphate carboxylase small c...    35   2.5  
tr|B3TFH0|B3TFH0_9EUKA Chloroplast ribulose-1,5-bisphosphate car...    35   2.5  
tr|B3TFG9|B3TFG9_9EUKA Chloroplast ribulose-1,5-bisphosphate car...    35   2.5  
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c...    34   3.2  
tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c...    34   3.2  
tr|A9U377|A9U377_PHYPA Ribulose bisphosphate carboxylase small c...    34   3.2  
tr|A9TWX2|A9TWX2_PHYPA Ribulose bisphosphate carboxylase small c...    34   3.2  
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c...    34   3.2  
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c...    34   3.2  
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c...    34   3.2  
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c...    34   3.2  
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c...    34   3.2  
tr|A9S8M9|A9S8M9_PHYPA Ribulose bisphosphate carboxylase small c...    34   3.2  
tr|A9S8M6|A9S8M6_PHYPA Ribulose bisphosphate carboxylase small c...    34   3.2  
tr|A9S8M5|A9S8M5_PHYPA Ribulose bisphosphate carboxylase small c...    34   3.2  
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c...    34   3.2  
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c...    34   3.2  

>tr|Q43109|Q43109_PTEVI Ribulose bisphosphate carboxylase small
          chain (Fragment) OS=Pteris vittata GN=rbcS3 PE=2 SV=1
          Length = 43

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 21/23 (91%), Positives = 23/23 (100%)
 Frame = +1

Query: 1  IRVLGFDAKRQVQVSGFLVQKPS 69
          IRVLGFDAKRQVQV+GFLVQ+PS
Sbjct: 20 IRVLGFDAKRQVQVAGFLVQRPS 42


>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 21/23 (91%), Positives = 23/23 (100%)
 Frame = +1

Query: 1   IRVLGFDAKRQVQVSGFLVQKPS 69
           IRVLGFDAKRQVQV+GFLV+KPS
Sbjct: 151 IRVLGFDAKRQVQVAGFLVKKPS 173


>tr|Q43108|Q43108_PTEVI Ribulose bisphosphate carboxylase small
          chain (Fragment) OS=Pteris vittata GN=rbcS1 PE=2 SV=1
          Length = 34

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 20/22 (90%), Positives = 22/22 (100%)
 Frame = +1

Query: 1  IRVLGFDAKRQVQVSGFLVQKP 66
          IRVLGFDAKRQVQV+GFLV+KP
Sbjct: 13 IRVLGFDAKRQVQVAGFLVKKP 34


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
          Length = 214

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 15/23 (65%), Positives = 21/23 (91%)
 Frame = +1

Query: 1   IRVLGFDAKRQVQVSGFLVQKPS 69
           +RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 192 VRVLGFDSKKQVQICGFLVSRPN 214


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_225236 PE=3 SV=1
          Length = 183

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 15/23 (65%), Positives = 21/23 (91%)
 Frame = +1

Query: 1   IRVLGFDAKRQVQVSGFLVQKPS 69
           +RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 161 VRVLGFDSKKQVQICGFLVSRPN 183


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_221004 PE=3 SV=1
          Length = 184

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 15/23 (65%), Positives = 21/23 (91%)
 Frame = +1

Query: 1   IRVLGFDAKRQVQVSGFLVQKPS 69
           +RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 162 VRVLGFDSKKQVQICGFLVSRPN 184


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
           PE=2 SV=1
          Length = 184

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 15/23 (65%), Positives = 21/23 (91%)
 Frame = +1

Query: 1   IRVLGFDAKRQVQVSGFLVQKPS 69
           +RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 162 VRVLGFDSKKQVQICGFLVARPN 184


>tr|A9TYN7|A9TYN7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_226715 PE=3 SV=1
          Length = 91

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 15/23 (65%), Positives = 21/23 (91%)
 Frame = +1

Query: 1   IRVLGFDAKRQVQVSGFLVQKPS 69
           +RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 69  VRVLGFDSKKQVQICGFLVARPN 91


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87752 PE=3 SV=1
          Length = 179

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 15/23 (65%), Positives = 21/23 (91%)
 Frame = +1

Query: 1   IRVLGFDAKRQVQVSGFLVQKPS 69
           +RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 157 VRVLGFDSKKQVQICGFLVARPN 179


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87740 PE=3 SV=1
          Length = 179

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 15/23 (65%), Positives = 21/23 (91%)
 Frame = +1

Query: 1   IRVLGFDAKRQVQVSGFLVQKPS 69
           +RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 157 VRVLGFDSKKQVQICGFLVARPN 179