DK945648
Clone id YMU02A01NGRL0010_A03
Library
Length 384
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_A03. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence
CTTCCTCATTGCACTGCTCTCCTGCGATACCATGCCTTCCCATAATACCTTCATCAACAA
AAATAAGCTAGAAAAAAAGCAAAGGCCAAACCGTCCCATCCTGCATTGGATCGCCATGCG
CACCCACCACACCGTCAGGTACCATGCCAAGGGAATGCACTGGAAAAGAACCTGGCTTGG
TTTGTAGAAGTGCTGCAAGTTAAATTACATTTTTGAGAAATGTATTATTTGCTTTGTTGA
AGTGATGGAATCTATCCTATGATGTAATGTTTCGACTTGCACGTCCGGGTTTGTTTTGCA
CATGATGACAAGTAATGTAATGGGAATGACAATACTTTTGCTCATTGCTTCTGCTGTCGA
AAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P51424
Definition sp|P51424|RL391_ARATH 60S ribosomal protein L39-1 OS=Arabidopsis thaliana
Align length 50
Score (bit) 71.2
E-value 1.0e-12
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945648|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_A03, 5'
(359 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P51424|RL391_ARATH 60S ribosomal protein L39-1 OS=Arabidopsis... 71 1e-12
sp|P51426|RL39_ORYSJ 60S ribosomal protein L39 OS=Oryza sativa s... 70 3e-12
sp|P51425|RL39_MAIZE 60S ribosomal protein L39 OS=Zea mays GN=RP... 70 3e-12
sp|Q8L8W6|RL392_ARATH 60S ribosomal protein L39-2 OS=Arabidopsis... 66 5e-11
sp|Q962S4|RL39_SPOFR 60S ribosomal protein L39 OS=Spodoptera fru... 64 2e-10
sp|Q6F482|RL39_PLUXY 60S ribosomal protein L39 OS=Plutella xylos... 64 2e-10
sp|Q59GN2|R39L5_HUMAN Putative 60S ribosomal protein L39-like 5 ... 62 9e-10
sp|Q96W55|RL39_CANAL 60S ribosomal protein L39 OS=Candida albica... 61 2e-09
sp|P62893|RL39_RAT 60S ribosomal protein L39 OS=Rattus norvegicu... 61 2e-09
sp|P62892|RL39_MOUSE 60S ribosomal protein L39 OS=Mus musculus G... 61 2e-09
sp|Q90YS9|RL39_ICTPU 60S ribosomal protein L39 OS=Ictalurus punc... 61 2e-09
sp|P62891|RL39_HUMAN 60S ribosomal protein L39 OS=Homo sapiens G... 61 2e-09
sp|Q98TF5|RL39_CHICK 60S ribosomal protein L39 OS=Gallus gallus ... 61 2e-09
sp|Q3T051|RL39_BOVIN 60S ribosomal protein L39 OS=Bos taurus GN=... 61 2e-09
sp|P05767|RL39_SCHPO 60S ribosomal protein L39 OS=Schizosaccharo... 60 3e-09
sp|Q6BHV8|RL39_DEBHA 60S ribosomal protein L39 OS=Debaryomyces h... 59 6e-09
sp|Q96EH5|RL39L_HUMAN 60S ribosomal protein L39-like OS=Homo sap... 59 1e-08
sp|O16130|RL39_DROME 60S ribosomal protein L39 OS=Drosophila mel... 55 1e-07
sp|Q6CW22|RL39_KLULA 60S ribosomal protein L39 OS=Kluyveromyces ... 54 2e-07
sp|P48536|RL39_KLUMA 60S ribosomal protein L39 OS=Kluyveromyces ... 53 4e-07
sp|P52814|RL39_CAEEL 60S ribosomal protein L39 OS=Caenorhabditis... 53 5e-07
sp|Q758D8|RL39_ASHGO 60S ribosomal protein L39 OS=Ashbya gossypi... 53 5e-07
sp|P04650|RL39_YEAST 60S ribosomal protein L39 OS=Saccharomyces ... 51 2e-06
sp|O27650|RL39_METTH 50S ribosomal protein L39e OS=Methanobacter... 39 0.006
sp|Q5JGT6|RL39_PYRKO 50S ribosomal protein L39e OS=Pyrococcus ko... 38 0.018
sp|P59473|RL39_PYRHO 50S ribosomal protein L39e OS=Pyrococcus ho... 37 0.024
sp|Q12ZJ3|RL39_METBU 50S ribosomal protein L39e OS=Methanococcoi... 37 0.024
sp|Q9UYI8|RL39_PYRAB 50S ribosomal protein L39e OS=Pyrococcus ab... 36 0.053
sp|A2BN55|RL39_HYPBU 50S ribosomal protein L39e OS=Hyperthermus ... 35 0.090
sp|Q8TIN2|RL39_METAC 50S ribosomal protein L39e OS=Methanosarcin... 34 0.20

>sp|P51424|RL391_ARATH 60S ribosomal protein L39-1 OS=Arabidopsis
thaliana GN=RPL39A PE=2 SV=2
Length = 51

Score = 71.2 bits (173), Expect = 1e-12
Identities = 31/50 (62%), Positives = 38/50 (76%)
Frame = +2

Query: 32 MPSHNTFINKNKLEKKQRPNRPILHWIAMRTHHTVRYHAKGMHWKRTWLG 181
MPSH +F+ K KL KK R NRPI HWI +RT +T+RY+AK HW+RT LG
Sbjct: 1 MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG 50


>sp|P51426|RL39_ORYSJ 60S ribosomal protein L39 OS=Oryza sativa
subsp. japonica GN=RPL39 PE=3 SV=2
Length = 51

Score = 70.5 bits (171), Expect = 3e-12
Identities = 32/50 (64%), Positives = 37/50 (74%)
Frame = +2

Query: 32 MPSHNTFINKNKLEKKQRPNRPILHWIAMRTHHTVRYHAKGMHWKRTWLG 181
MPSH TF K KL KK R NRPI +WI MRT +T+RY+AK HW+RT LG
Sbjct: 1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLG 50


>sp|P51425|RL39_MAIZE 60S ribosomal protein L39 OS=Zea mays GN=RPL39
PE=3 SV=1
Length = 51

Score = 70.5 bits (171), Expect = 3e-12
Identities = 32/50 (64%), Positives = 37/50 (74%)
Frame = +2

Query: 32 MPSHNTFINKNKLEKKQRPNRPILHWIAMRTHHTVRYHAKGMHWKRTWLG 181
MPSH TF K KL KK R NRPI +WI MRT +T+RY+AK HW+RT LG
Sbjct: 1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLG 50


>sp|Q8L8W6|RL392_ARATH 60S ribosomal protein L39-2 OS=Arabidopsis
thaliana GN=RPL39B PE=2 SV=1
Length = 51

Score = 66.2 bits (160), Expect = 5e-11
Identities = 29/50 (58%), Positives = 37/50 (74%)
Frame = +2

Query: 32 MPSHNTFINKNKLEKKQRPNRPILHWIAMRTHHTVRYHAKGMHWKRTWLG 181
MPSH +F+ K KL KK R NRPI +WI +RT + +RY+AK HW+RT LG
Sbjct: 1 MPSHKSFMIKKKLGKKMRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKLG 50


>sp|Q962S4|RL39_SPOFR 60S ribosomal protein L39 OS=Spodoptera
frugiperda GN=RpL39 PE=3 SV=1
Length = 51

Score = 63.9 bits (154), Expect = 2e-10
Identities = 29/51 (56%), Positives = 36/51 (70%)
Frame = +2

Query: 32 MPSHNTFINKNKLEKKQRPNRPILHWIAMRTHHTVRYHAKGMHWKRTWLGL 184
M +H TFI K KL KK + NRPI W+ MRT +T+RY+AK HW+RT L L
Sbjct: 1 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 51


>sp|Q6F482|RL39_PLUXY 60S ribosomal protein L39 OS=Plutella
xylostella GN=RpL39 PE=3 SV=1
Length = 51

Score = 63.9 bits (154), Expect = 2e-10
Identities = 29/51 (56%), Positives = 36/51 (70%)
Frame = +2

Query: 32 MPSHNTFINKNKLEKKQRPNRPILHWIAMRTHHTVRYHAKGMHWKRTWLGL 184
M +H TFI K KL KK + NRPI W+ MRT +T+RY+AK HW+RT L L
Sbjct: 1 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 51


>sp|Q59GN2|R39L5_HUMAN Putative 60S ribosomal protein L39-like 5
OS=Homo sapiens GN=RPL39P5 PE=5 SV=2
Length = 51

Score = 62.0 bits (149), Expect = 9e-10
Identities = 29/51 (56%), Positives = 35/51 (68%)
Frame = +2

Query: 32 MPSHNTFINKNKLEKKQRPNRPILHWIAMRTHHTVRYHAKGMHWKRTWLGL 184
M SH TF K L KKQ+ NRPI WI M+T + +RY++K HWKRT LGL
Sbjct: 1 MSSHKTFKIKQFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWKRTKLGL 51


>sp|Q96W55|RL39_CANAL 60S ribosomal protein L39 OS=Candida albicans
GN=RPL39 PE=3 SV=1
Length = 51

Score = 61.2 bits (147), Expect = 2e-09
Identities = 26/51 (50%), Positives = 35/51 (68%)
Frame = +2

Query: 32 MPSHNTFINKNKLEKKQRPNRPILHWIAMRTHHTVRYHAKGMHWKRTWLGL 184
MPS +F K KL K Q+ NRP+ WI +RT + +RY+AK HW+RT LG+
Sbjct: 1 MPSQKSFRTKQKLAKAQKQNRPLPQWIRLRTDNKIRYNAKRRHWRRTKLGI 51


>sp|P62893|RL39_RAT 60S ribosomal protein L39 OS=Rattus norvegicus
GN=Rpl39 PE=1 SV=2
Length = 51

Score = 60.8 bits (146), Expect = 2e-09
Identities = 28/51 (54%), Positives = 35/51 (68%)
Frame = +2

Query: 32 MPSHNTFINKNKLEKKQRPNRPILHWIAMRTHHTVRYHAKGMHWKRTWLGL 184
M SH TF K L KKQ+ NRPI WI M+T + +RY++K HW+RT LGL
Sbjct: 1 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51


>sp|P62892|RL39_MOUSE 60S ribosomal protein L39 OS=Mus musculus
GN=Rpl39 PE=2 SV=2
Length = 51

Score = 60.8 bits (146), Expect = 2e-09
Identities = 28/51 (54%), Positives = 35/51 (68%)
Frame = +2

Query: 32 MPSHNTFINKNKLEKKQRPNRPILHWIAMRTHHTVRYHAKGMHWKRTWLGL 184
M SH TF K L KKQ+ NRPI WI M+T + +RY++K HW+RT LGL
Sbjct: 1 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51


tr_hit_id B8LNN1
Definition tr|B8LNN1|B8LNN1_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 51
Score (bit) 74.3
E-value 3.0e-12
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945648|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_A03, 5'
(359 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B8LNN1|B8LNN1_PICSI Putative uncharacterized protein OS=Picea... 74 3e-12
tr|B6VC53|B6VC53_VERFO 60S ribosomal protein L39 OS=Vernicia for... 74 3e-12
tr|A9PC42|A9PC42_POPTR Putative uncharacterized protein OS=Popul... 73 8e-12
tr|Q6KAJ8|Q6KAJ8_ORYSJ Putative 60S ribosomal protein L39 OS=Ory... 72 1e-11
tr|Q5I7K7|Q5I7K7_WHEAT Ribosomal protein L39 OS=Triticum aestivu... 72 1e-11
tr|A9TST8|A9TST8_PHYPA Predicted protein OS=Physcomitrella paten... 72 2e-11
tr|Q0WWV8|Q0WWV8_ARATH 60S ribosomal protein L39 OS=Arabidopsis ... 71 2e-11
tr|B6SP72|B6SP72_MAIZE 60S ribosomal protein L39 OS=Zea mays PE=... 71 2e-11
tr|Q5SMI4|Q5SMI4_ORYSJ 60S ribosomal protein L39 (Putative uncha... 70 4e-11
tr|Q0DWT0|Q0DWT0_ORYSJ Os02g0797200 protein OS=Oryza sativa subs... 70 4e-11
tr|B6SP00|B6SP00_MAIZE 60S ribosomal protein L39 OS=Zea mays PE=... 70 4e-11
tr|A9SKS4|A9SKS4_PHYPA Predicted protein OS=Physcomitrella paten... 70 4e-11
tr|A2YA08|A2YA08_ORYSI Putative uncharacterized protein OS=Oryza... 70 4e-11
tr|A2XAK5|A2XAK5_ORYSI Putative uncharacterized protein OS=Oryza... 70 4e-11
tr|B6SYU3|B6SYU3_MAIZE 60S ribosomal protein L39 OS=Zea mays PE=... 70 7e-11
tr|Q0DWT2|Q0DWT2_ORYSJ Os02g0796900 protein (Fragment) OS=Oryza ... 69 2e-10
tr|B2AWK1|B2AWK1_PODAN Predicted CDS Pa_7_7430 OS=Podospora anse... 68 2e-10
tr|Q7S2X9|Q7S2X9_NEUCR 60S ribosomal protein L39 OS=Neurospora c... 67 4e-10
tr|Q2H9R2|Q2H9R2_CHAGB Putative uncharacterized protein OS=Chaet... 67 4e-10
tr|A8J1Q3|A8J1Q3_CHLRE Ribosomal protein L39 OS=Chlamydomonas re... 67 6e-10
tr|A6R050|A6R050_AJECN Ribosomal protein L39 OS=Ajellomyces caps... 66 1e-09
tr|A4QTS9|A4QTS9_MAGGR Ribosomal protein L39 OS=Magnaporthe gris... 66 1e-09
tr|Q2M3Y3|Q2M3Y3_PHYIN Ribosomal protein L39 OS=Phytophthora inf... 65 1e-09
tr|Q8ISP8|Q8ISP8_BRABE Ribosomal protein L39 OS=Branchiostoma be... 65 1e-09
tr|Q86QR6|Q86QR6_BRABE Ribosomal protein L39 OS=Branchiostoma be... 65 1e-09
tr|Q0UG28|Q0UG28_PHANO Putative uncharacterized protein OS=Phaeo... 65 2e-09
tr|B7QMT2|B7QMT2_IXOSC Ribosomal protein L39, putative OS=Ixodes... 64 3e-09
tr|A2IAD7|A2IAD7_9NEOP Ribosomal protein L39 OS=Xenopsylla cheop... 64 3e-09
tr|B8BVE4|B8BVE4_THAPS RL39, ribosomal protein 39 60S large ribo... 64 4e-09
tr|Q5UAP7|Q5UAP7_BOMMO Ribosomal protein L39 OS=Bombyx mori GN=R... 64 4e-09

>tr|B8LNN1|B8LNN1_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=4 SV=1
Length = 51

Score = 74.3 bits (181), Expect = 3e-12
Identities = 34/51 (66%), Positives = 38/51 (74%)
Frame = +2

Query: 32 MPSHNTFINKNKLEKKQRPNRPILHWIAMRTHHTVRYHAKGMHWKRTWLGL 184
MPSH TF K KL KK R NRPI HWI MRT +T+RY+AK HW+RT LGL
Sbjct: 1 MPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGL 51


>tr|B6VC53|B6VC53_VERFO 60S ribosomal protein L39 OS=Vernicia fordii
GN=RPL39C PE=4 SV=1
Length = 51

Score = 74.3 bits (181), Expect = 3e-12
Identities = 33/50 (66%), Positives = 38/50 (76%)
Frame = +2

Query: 32 MPSHNTFINKNKLEKKQRPNRPILHWIAMRTHHTVRYHAKGMHWKRTWLG 181
MPSH TF+ K KL KK R NRPI HWI MRT +T+RY+AK HW+RT LG
Sbjct: 1 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLG 50


>tr|A9PC42|A9PC42_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=4 SV=1
Length = 51

Score = 72.8 bits (177), Expect = 8e-12
Identities = 33/50 (66%), Positives = 37/50 (74%)
Frame = +2

Query: 32 MPSHNTFINKNKLEKKQRPNRPILHWIAMRTHHTVRYHAKGMHWKRTWLG 181
MPSH TF K KL KK R NRPI HWI MRT +T+RY+AK HW+RT LG
Sbjct: 1 MPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLG 50


>tr|Q6KAJ8|Q6KAJ8_ORYSJ Putative 60S ribosomal protein L39 OS=Oryza
sativa subsp. japonica GN=OJ1004_E04.27 PE=4 SV=1
Length = 118

Score = 72.4 bits (176), Expect = 1e-11
Identities = 33/51 (64%), Positives = 38/51 (74%)
Frame = +2

Query: 29 TMPSHNTFINKNKLEKKQRPNRPILHWIAMRTHHTVRYHAKGMHWKRTWLG 181
TMPSH TF K KL KK R NRPI +WI MRT +T+RY+AK HW+RT LG
Sbjct: 67 TMPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLG 117


>tr|Q5I7K7|Q5I7K7_WHEAT Ribosomal protein L39 OS=Triticum aestivum
PE=4 SV=1
Length = 51

Score = 72.4 bits (176), Expect = 1e-11
Identities = 33/50 (66%), Positives = 38/50 (76%)
Frame = +2

Query: 32 MPSHNTFINKNKLEKKQRPNRPILHWIAMRTHHTVRYHAKGMHWKRTWLG 181
MPSH TF K KL KKQR NRPI +WI MRT +T+RY+AK HW+RT LG
Sbjct: 1 MPSHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLG 50


>tr|A9TST8|A9TST8_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_96676 PE=4 SV=1
Length = 51

Score = 71.6 bits (174), Expect = 2e-11
Identities = 32/51 (62%), Positives = 38/51 (74%)
Frame = +2

Query: 32 MPSHNTFINKNKLEKKQRPNRPILHWIAMRTHHTVRYHAKGMHWKRTWLGL 184
MPS TF+ K KL KK + NRPI HWI MRT +T+RY+AK HW+RT LGL
Sbjct: 1 MPSQKTFLIKKKLGKKMKQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGL 51


>tr|Q0WWV8|Q0WWV8_ARATH 60S ribosomal protein L39 OS=Arabidopsis
thaliana GN=At2g25210 PE=4 SV=1
Length = 51

Score = 71.2 bits (173), Expect = 2e-11
Identities = 31/50 (62%), Positives = 38/50 (76%)
Frame = +2

Query: 32 MPSHNTFINKNKLEKKQRPNRPILHWIAMRTHHTVRYHAKGMHWKRTWLG 181
MPSH +F+ K KL KK R NRPI HWI +RT +T+RY+AK HW+RT LG
Sbjct: 1 MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG 50


>tr|B6SP72|B6SP72_MAIZE 60S ribosomal protein L39 OS=Zea mays PE=4
SV=1
Length = 51

Score = 71.2 bits (173), Expect = 2e-11
Identities = 32/50 (64%), Positives = 37/50 (74%)
Frame = +2

Query: 32 MPSHNTFINKNKLEKKQRPNRPILHWIAMRTHHTVRYHAKGMHWKRTWLG 181
MPSH TF K KL KK R NRPI +WI MRT +T+RY+AK HW+RT LG
Sbjct: 1 MPSHKTFRIKKKLAKKMRQNRPIAYWIRMRTDNTIRYNAKRRHWRRTKLG 50


>tr|Q5SMI4|Q5SMI4_ORYSJ 60S ribosomal protein L39 (Putative
uncharacterized protein) OS=Oryza sativa subsp. japonica
GN=OSJNBb0019L07.23 PE=4 SV=1
Length = 51

Score = 70.5 bits (171), Expect = 4e-11
Identities = 32/50 (64%), Positives = 37/50 (74%)
Frame = +2

Query: 32 MPSHNTFINKNKLEKKQRPNRPILHWIAMRTHHTVRYHAKGMHWKRTWLG 181
MPSH TF K KL KK R NRPI +WI MRT +T+RY+AK HW+RT LG
Sbjct: 1 MPSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLG 50


>tr|Q0DWT0|Q0DWT0_ORYSJ Os02g0797200 protein OS=Oryza sativa subsp.
japonica GN=Os02g0797200 PE=4 SV=1
Length = 51

Score = 70.5 bits (171), Expect = 4e-11
Identities = 32/50 (64%), Positives = 37/50 (74%)
Frame = +2

Query: 32 MPSHNTFINKNKLEKKQRPNRPILHWIAMRTHHTVRYHAKGMHWKRTWLG 181
MPSH TF K KL KK R NRPI +WI MRT +T+RY+AK HW+RT LG
Sbjct: 1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLG 50