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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945652
Clone id YMU02A01NGRL0010_A07
Library
Length 566
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_A07. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TCACCGCTTATAAACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGA
AACTAAGTGGAGGTCCGAACCGACTGATGTTGAAAAATCAGCGGATGAGTTGTGGTTAGG
GGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCCCCGAAATGCGTTGAGGCGCAG
CAGTTGACTAGACCATCTAGGGGTAAAGCACCGTTCCGGTGCGGGCTGCGAGAGCGGTAC
CAAATCGAGGCAAACTCTGAATACTAGATGTAACGTTCAAGTAAAAGGAACGAAGGAAAA
GGGTCAACCAGTGAGACGATGAGGGATAAGCTTCACCGTCGAGAGGGGAACAGCCCAGAT
CACCAGCTAAGGCCCCTAAATGACCGCTCAGTGGTAAAGGAGGTAGGAGTGCAAAGACAG
CCAGGAGGTTTGCCTAGAAGCAGCCACCCTTGAAAGAGTGCGTAATAGCTCACTGATCAA
GCGCTCTTGCGCCGAAGATGAGCGGGACTAAGCGGTCTGCCGAAGCTGTGGGATGTCAAA
AAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q80WV7
Definition sp|Q80WV7|SRR2L_MOUSE SRRM2-like protein OS=Mus musculus
Align length 65
Score (bit) 30.8
E-value 4.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945652|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_A07, 5'
         (537 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q80WV7|SRR2L_MOUSE SRRM2-like protein OS=Mus musculus GN=MNCb...    31   4.3  
sp|Q566X8|DMX1B_DANRE Diencephalon/mesencephalon homeobox protei...    30   5.7  
sp|Q5R108|RECO_IDILO DNA repair protein recO OS=Idiomarina loihi...    30   7.5  
sp|Q8UVR5|BAZ1A_XENLA Bromodomain adjacent to zinc finger domain...    30   7.5  
sp|Q2U968|SEC16_ASPOR COPII coat assembly protein sec16 OS=Asper...    30   9.7  

>sp|Q80WV7|SRR2L_MOUSE SRRM2-like protein OS=Mus musculus
           GN=MNCb-4760 PE=2 SV=1
          Length = 648

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = +3

Query: 336 PSRGEQPRSPAKAPK*PLSGKGGRSA-KTARRFA*KQPPLKECVIAH*SSALAPKMSGTK 512
           P+RG+  +SP  AP     G+GGR+A  TARR   ++   +       SSA AP+  G +
Sbjct: 354 PARGKDSQSPRSAPS--SQGRGGRAAGGTARRRRRRRRRRRSR-----SSANAPRRRGRR 406

Query: 513 RSAEA 527
           R+  A
Sbjct: 407 RTKPA 411


>sp|Q566X8|DMX1B_DANRE Diencephalon/mesencephalon homeobox protein
           1-B OS=Danio rerio GN=dmbx1b PE=2 SV=1
          Length = 369

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 22/80 (27%), Positives = 35/80 (43%)
 Frame = +3

Query: 285 KERRKRVNQ*DDEG*ASPSRGEQPRSPAKAPK*PLSGKGGRSAKTARRFA*KQPPLKECV 464
           KE+ +R+ +   EG     + E P   A+AP  PL G+G  SA +             C 
Sbjct: 130 KEQLQRLKEAGTEGAQDEGKEEAPPVEAQAPPSPLDGRGLTSAPS-------------CE 176

Query: 465 IAH*SSALAPKMSGTKRSAE 524
           +    +  +P+ SG +  AE
Sbjct: 177 LNEEVNVTSPEQSGAESGAE 196


>sp|Q5R108|RECO_IDILO DNA repair protein recO OS=Idiomarina
           loihiensis GN=recO PE=3 SV=1
          Length = 234

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
 Frame = -1

Query: 243 LVPLSQPAPERCFTPRWSSQLLRLNAFRGEPASSGFEWHFTPNHNSSADFSTSVGSDLHL 64
           LVP    APE  F    S+     N+ R EPA   FEW    +  ++ D+     +   L
Sbjct: 99  LVPTEAEAPE-LFESYLSALQNMTNSERVEPALRQFEWQLLQHLGAAFDWHYDADTGNVL 157

Query: 63  VSPK---LHPGHG*ITQVR 16
              K     P HG +TQ R
Sbjct: 158 SDSKWCYFIPDHGFVTQAR 176


>sp|Q8UVR5|BAZ1A_XENLA Bromodomain adjacent to zinc finger domain
           protein 1A (Fragment) OS=Xenopus laevis GN=baz1a PE=2
           SV=1
          Length = 627

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 1/96 (1%)
 Frame = +1

Query: 115 VRGEMPLEPRASWFSPKCVEAQQLTR-PSRGKAPFRCGLRERYQIEANSEY*M*RSSKRN 291
           VR ++   P   WF P+C   Q+  R PS          R RY ++++ E       K  
Sbjct: 252 VRPKLKYVPEGDWFCPECHPKQRSHRLPS----------RHRYSMDSDEEEEEELDQKEE 301

Query: 292 EGKGSTSETMRDKLHRREGNSPDHQLRPLNDRSVVK 399
           E +    E + +  + +E    + +  P   R+ V+
Sbjct: 302 EEEEEEQEELSESENEQEDEMSEEESPPKRGRAKVQ 337


>sp|Q2U968|SEC16_ASPOR COPII coat assembly protein sec16
            OS=Aspergillus oryzae GN=sec16 PE=3 SV=1
          Length = 1843

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 34/101 (33%), Positives = 40/101 (39%), Gaps = 7/101 (6%)
 Frame = +3

Query: 240  PNRGKL*ILDVTFK*KERRKRVNQ*DDEG*ASPSRGEQPRSPAKAPK*PLSGKGGRSAKT 419
            P R KL   +  +  KE +K VN+ D    AS SRG  P   A AP    SG     A +
Sbjct: 1684 PIRAKLGEENSFYYDKELKKWVNKKDPNS-ASVSRGTPPPPKASAPSRSASGSTAPPAAS 1742

Query: 420  ARRFA*KQPPLKECVIAH*SS-------ALAPKMSGTKRSA 521
                   +PP         SS       A  P M GT RSA
Sbjct: 1743 MGLGLDSRPPSSAGAPPSLSSSPAPPSLAAPPPMLGTARSA 1783
tr_hit_id Q5M9Z9
Definition tr|Q5M9Z9|Q5M9Z9_TOBAC Putative uncharacterized protein orf106b OS=Nicotiana tabacum
Align length 37
Score (bit) 77.4
E-value 1.0e-34
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945652|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_A07, 5'
         (537 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5M9Z9|Q5M9Z9_TOBAC Putative uncharacterized protein orf106b ...    77   1e-34
tr|A6N1H4|A6N1H4_ORYSI Retrotransposon protein OS=Oryza sativa s...   138   2e-31
tr|B7FGU0|B7FGU0_MEDTR Putative uncharacterized protein OS=Medic...   129   1e-28
tr|A7QCF1|A7QCF1_VITVI Chromosome undetermined scaffold_77, whol...    77   6e-20
tr|Q85WT3|Q85WT3_PINKO ORF46f OS=Pinus koraiensis PE=4 SV=1            87   4e-16
tr|Q9RXQ4|Q9RXQ4_DEIRA Putative uncharacterized protein OS=Deino...    74   5e-12
tr|Q9RS75|Q9RS75_DEIRA Putative uncharacterized protein OS=Deino...    74   5e-12
tr|A7B8Q0|A7B8Q0_RUMGN Putative uncharacterized protein OS=Rumin...    67   8e-10
tr|A5ZTV7|A5ZTV7_9FIRM Putative uncharacterized protein OS=Rumin...    67   8e-10
tr|A5ZQM1|A5ZQM1_9FIRM Putative uncharacterized protein OS=Rumin...    67   8e-10
tr|A5KL06|A5KL06_9FIRM Putative uncharacterized protein OS=Rumin...    67   8e-10
tr|B1BC32|B1BC32_CLOBO Putative uncharacterized protein OS=Clost...    45   2e-09
tr|A7QY24|A7QY24_VITVI Chromosome undetermined scaffold_237, who...    52   5e-09
tr|B2PX02|B2PX02_PROST Putative uncharacterized protein OS=Provi...    62   2e-08
tr|B0A7G6|B0A7G6_9CLOT Putative uncharacterized protein OS=Clost...    59   2e-07
tr|B3D9S7|B3D9S7_BURM1 Putative uncharacterized protein OS=Burkh...    58   4e-07
tr|A2PD01|A2PD01_VIBCH Putative uncharacterized protein OS=Vibri...    57   5e-07
tr|A8URE2|A8URE2_9AQUI Putative uncharacterized protein OS=Hydro...    55   3e-06
tr|A9PE47|A9PE47_POPTR Putative uncharacterized protein OS=Popul...    53   9e-06
tr|B4VCZ2|B4VCZ2_9ACTO Putative uncharacterized protein OS=Strep...    53   1e-05
tr|B1BE08|B1BE08_CLOBO Putative uncharacterized protein OS=Clost...    51   2e-05
tr|B0NEY0|B0NEY0_EUBSP Putative uncharacterized protein OS=Clost...    52   2e-05
tr|A7B5W8|A7B5W8_RUMGN Putative uncharacterized protein OS=Rumin...    52   2e-05
tr|A5KRH1|A5KRH1_9FIRM Putative uncharacterized protein OS=Rumin...    52   2e-05
tr|A5KR91|A5KR91_9FIRM Putative uncharacterized protein OS=Rumin...    52   2e-05
tr|Q3BKI1|Q3BKI1_9PROT Putative uncharacterized protein OS=Magne...    49   1e-04
tr|B7R8W0|B7R8W0_9THEO Putative uncharacterized protein OS=Carbo...    47   5e-04
tr|A7PZE8|A7PZE8_VITVI Chromosome chr15 scaffold_40, whole genom...    46   0.001
tr|A7PNG2|A7PNG2_VITVI Chromosome chr1 scaffold_22, whole genome...    44   0.005
tr|A7PNF4|A7PNF4_VITVI Chromosome chr1 scaffold_22, whole genome...    42   0.020

>tr|Q5M9Z9|Q5M9Z9_TOBAC Putative uncharacterized protein orf106b
           OS=Nicotiana tabacum GN=orf106b PE=4 SV=1
          Length = 106

 Score = 77.4 bits (189), Expect(3) = 1e-34
 Identities = 35/37 (94%), Positives = 36/37 (97%)
 Frame = -2

Query: 188 VNCCASTHFGENQLALGSSGISPLTTTHPLIFQHQSV 78
           VNCCASTHFGENQLALG+SGISPLTTTHPLI QHQSV
Sbjct: 48  VNCCASTHFGENQLALGASGISPLTTTHPLILQHQSV 84



 Score = 60.8 bits (146), Expect(3) = 1e-34
 Identities = 31/47 (65%), Positives = 35/47 (74%)
 Frame = -1

Query: 336 VKLIPHRLTG*PFSFVPFT*TLHLVFRVCLDLVPLSQPAPERCFTPR 196
           +KLIPHRLT  P    P     +LVFRVCLDLVPLS+PAP+ CFTPR
Sbjct: 1   MKLIPHRLTSRPCP--PLILRSYLVFRVCLDLVPLSRPAPKPCFTPR 45



 Score = 52.0 bits (123), Expect(3) = 1e-34
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = -3

Query: 76  GPPLSFTQASSWSWIDHPGSG 14
           GPPLSFTQASSWSWIDHPGSG
Sbjct: 85  GPPLSFTQASSWSWIDHPGSG 105


>tr|A6N1H4|A6N1H4_ORYSI Retrotransposon protein OS=Oryza sativa
           subsp. indica PE=4 SV=1
          Length = 109

 Score =  138 bits (347), Expect = 2e-31
 Identities = 76/114 (66%), Positives = 81/114 (71%), Gaps = 2/114 (1%)
 Frame = +1

Query: 127 MPLEPRASWFSPKCVEAQQLTRPSRGKAPFRCGLRE--RYQIEANSEY*M*RSSKRNEGK 300
           MPLEPRASWFSPKCVEAQQLT     K  F  G     + +   N+ Y       +  G 
Sbjct: 1   MPLEPRASWFSPKCVEAQQLTGHLGVKHCFGAGCASGTKSRQTLNTRY-----DPKITGV 55

Query: 301 GSTSETMRDKLHRREGNSPDHQLRPLNDRSVVKEVGVQRQPGGLPRSSHP*KSA 462
            S SETM DKLHRREGNSPDHQLRPLNDRSV+KEVGVQRQPGGLPRSSHP KSA
Sbjct: 56  RSASETMGDKLHRREGNSPDHQLRPLNDRSVIKEVGVQRQPGGLPRSSHPLKSA 109


>tr|B7FGU0|B7FGU0_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=4 SV=1
          Length = 102

 Score =  129 bits (323), Expect = 1e-28
 Identities = 70/108 (64%), Positives = 77/108 (71%)
 Frame = +1

Query: 127 MPLEPRASWFSPKCVEAQQLTRPSRGKAPFRCGLRERYQIEANSEY*M*RSSKRNEGKGS 306
           MPLEPRASWFSPKCVEAQQLT     K  F  G       E+ ++     +++      S
Sbjct: 1   MPLEPRASWFSPKCVEAQQLTGHLGVKHCFGAGR------ESGTKSRQTLNTRYPWRVKS 54

Query: 307 TSETMRDKLHRREGNSPDHQLRPLNDRSVVKEVGVQRQPGGLPRSSHP 450
            SE M DKLHRREGNSPDHQLRPLNDRSV+KEVGVQRQPGGLPRSSHP
Sbjct: 55  ASEAMGDKLHRREGNSPDHQLRPLNDRSVIKEVGVQRQPGGLPRSSHP 102


>tr|A7QCF1|A7QCF1_VITVI Chromosome undetermined scaffold_77, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00035369001 PE=4 SV=1
          Length = 235

 Score = 77.0 bits (188), Expect(2) = 6e-20
 Identities = 37/41 (90%), Positives = 38/41 (92%)
 Frame = -2

Query: 188 VNCCASTHFGENQLALGSSGISPLTTTHPLIFQHQSVRTST 66
           VN CASTHFGENQLALGSS ISPLTTTHPLI QHQSV+TST
Sbjct: 57  VNRCASTHFGENQLALGSSDISPLTTTHPLILQHQSVQTST 97



 Score = 43.5 bits (101), Expect(2) = 6e-20
 Identities = 18/23 (78%), Positives = 22/23 (95%)
 Frame = -1

Query: 264 VFRVCLDLVPLSQPAPERCFTPR 196
           +FRVCLDLVPLS+PA ++CFTPR
Sbjct: 32  MFRVCLDLVPLSRPALKQCFTPR 54


>tr|Q85WT3|Q85WT3_PINKO ORF46f OS=Pinus koraiensis PE=4 SV=1
          Length = 46

 Score = 87.4 bits (215), Expect = 4e-16
 Identities = 42/46 (91%), Positives = 42/46 (91%)
 Frame = +1

Query: 127 MPLEPRASWFSPKCVEAQQLTRPSRGKAPFRCGLRERYQIEANSEY 264
           MPLEPRASWFSPKCVEAQQLT PSRGKA FR G RERYQIEANSEY
Sbjct: 1   MPLEPRASWFSPKCVEAQQLTGPSRGKALFRYGPRERYQIEANSEY 46


>tr|Q9RXQ4|Q9RXQ4_DEIRA Putative uncharacterized protein
           OS=Deinococcus radiodurans GN=DR_0254 PE=4 SV=1
          Length = 139

 Score = 73.9 bits (180), Expect = 5e-12
 Identities = 35/49 (71%), Positives = 37/49 (75%)
 Frame = -2

Query: 512 LSPAHLRRKSA*SVSYYALFQGWLLLGKPPGCLCTPTSFTTERSFRGLS 366
           LSP H RR     VSYYALF+GWLLL +PPGCLC  TS TTERSFR LS
Sbjct: 91  LSPDHFRRIVTRPVSYYALFEGWLLLSQPPGCLCDDTSLTTERSFRDLS 139


>tr|Q9RS75|Q9RS75_DEIRA Putative uncharacterized protein
           OS=Deinococcus radiodurans GN=DR_2252 PE=4 SV=1
          Length = 133

 Score = 73.9 bits (180), Expect = 5e-12
 Identities = 35/49 (71%), Positives = 37/49 (75%)
 Frame = -2

Query: 512 LSPAHLRRKSA*SVSYYALFQGWLLLGKPPGCLCTPTSFTTERSFRGLS 366
           LSP H RR     VSYYALF+GWLLL +PPGCLC  TS TTERSFR LS
Sbjct: 85  LSPDHFRRIVTRPVSYYALFEGWLLLSQPPGCLCDDTSLTTERSFRDLS 133


>tr|A7B8Q0|A7B8Q0_RUMGN Putative uncharacterized protein
           OS=Ruminococcus gnavus ATCC 29149 GN=RUMGNA_03973 PE=4
           SV=1
          Length = 81

 Score = 66.6 bits (161), Expect = 8e-10
 Identities = 34/57 (59%), Positives = 39/57 (68%)
 Frame = -3

Query: 181 AAPQRISGRTS*LWVRVAFHP*PQLIR*FFNISRFGPPLSFTQASSWSWIDHPGSGL 11
           A+P+ IS RTS L VR+ F P P LI   FN   FGPPL FT  S+W+WIDHP SGL
Sbjct: 4   ASPKAISRRTSYLRVRLEFLPYPHLIPTLFNGCGFGPPLPFTATSTWTWIDHPVSGL 60


>tr|A5ZTV7|A5ZTV7_9FIRM Putative uncharacterized protein
           OS=Ruminococcus obeum ATCC 29174 GN=RUMOBE_02439 PE=4
           SV=1
          Length = 199

 Score = 66.6 bits (161), Expect = 8e-10
 Identities = 35/64 (54%), Positives = 42/64 (65%)
 Frame = -3

Query: 202 P*MV*STAAPQRISGRTS*LWVRVAFHP*PQLIR*FFNISRFGPPLSFTQASSWSWIDHP 23
           P  + + A+P+ IS RTS L VR+ F P P LI   FN   FGPPL  T AS+W+WIDHP
Sbjct: 11  PPQISTKASPKAISRRTSYLRVRLEFLPYPHLIPTLFNGCGFGPPLPLTAASTWTWIDHP 70

Query: 22  GSGL 11
            SGL
Sbjct: 71  VSGL 74


>tr|A5ZQM1|A5ZQM1_9FIRM Putative uncharacterized protein
           OS=Ruminococcus obeum ATCC 29174 GN=RUMOBE_01293 PE=4
           SV=1
          Length = 199

 Score = 66.6 bits (161), Expect = 8e-10
 Identities = 35/64 (54%), Positives = 42/64 (65%)
 Frame = -3

Query: 202 P*MV*STAAPQRISGRTS*LWVRVAFHP*PQLIR*FFNISRFGPPLSFTQASSWSWIDHP 23
           P  + + A+P+ IS RTS L VR+ F P P LI   FN   FGPPL  T AS+W+WIDHP
Sbjct: 11  PPQISTKASPKAISRRTSYLRVRLEFLPYPHLIPTLFNGCGFGPPLPLTAASTWTWIDHP 70

Query: 22  GSGL 11
            SGL
Sbjct: 71  VSGL 74