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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945663
Clone id YMU02A01NGRL0010_A20
Library
Length 293
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_A20. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GATCATCAGTGGATCGAGACTGTTTAAGCGGATGGGGTGGAATTGTCTATGTTGTGTCGG
CTGATCAAGTTATCACTCGAACTCTGAAGGGACGAATGGATTGATTGTTTTATGCGGAGC
GGTGCTATCATTTTCTCCGACCTCAAGCTGCTGACTGAGGGTTTGGGAGCTGGACAAGTC
CCGATAATAACATGCCATTGTTAGGTTTCTGTGGGTATGAGGGAATTTTGGCCTTTTGCT
TAATTATGTCAATTCTGATCATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id O65084
Definition sp|O65084|PSB3_PICMA Proteasome subunit beta type-3 OS=Picea mariana
Align length 33
Score (bit) 61.2
E-value 2.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945663|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_A20, 5'
         (263 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O65084|PSB3_PICMA Proteasome subunit beta type-3 OS=Picea mar...    61   2e-09
sp|O81153|PSB3B_ARATH Proteasome subunit beta type-3-B OS=Arabid...    54   3e-07
sp|Q9XI05|PSB3A_ARATH Proteasome subunit beta type-3-A OS=Arabid...    53   5e-07
sp|Q9Y7T8|PSB3_SCHPO Probable proteasome subunit beta type-3 OS=...    49   1e-05
sp|Q9LST7|PSB3_ORYSJ Proteasome subunit beta type-3 OS=Oryza sat...    47   3e-05
sp|Q55D66|PSB3_DICDI Proteasome subunit beta type-3 OS=Dictyoste...    46   5e-05
sp|P25451|PSB3_YEAST Proteasome component PUP3 OS=Saccharomyces ...    44   2e-04
sp|Q9XYN7|PSB3_DROME Proteasome subunit beta type-3 OS=Drosophil...    44   2e-04
sp|Q9R1P1|PSB3_MOUSE Proteasome subunit beta type-3 OS=Mus muscu...    44   3e-04
sp|P40112|PSB3_RAT Proteasome subunit beta type-3 OS=Rattus norv...    43   4e-04
sp|P49720|PSB3_HUMAN Proteasome subunit beta type-3 OS=Homo sapi...    43   4e-04
sp|P33672|PSB3_BOVIN Proteasome subunit beta type-3 OS=Bos tauru...    43   4e-04
sp|O73817|PSB3_ONCMY Proteasome subunit beta type-3 OS=Oncorhync...    42   0.001
sp|Q23237|PSB3_CAEEL Proteasome subunit beta type-3 OS=Caenorhab...    41   0.002
sp|Q9NDA1|PSB3_TRYBB Proteasome subunit beta type-3 OS=Trypanoso...    40   0.003

>sp|O65084|PSB3_PICMA Proteasome subunit beta type-3 OS=Picea
           mariana GN=PBC1 PE=2 SV=1
          Length = 204

 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 28/33 (84%), Positives = 30/33 (90%)
 Frame = +3

Query: 3   SSVDRDCLSGWGGIVYVVSADQVITRTLKGRMD 101
           SS+DRDCLSGWGG VYVVS +QVI RTLKGRMD
Sbjct: 172 SSIDRDCLSGWGGHVYVVSPNQVIERTLKGRMD 204


>sp|O81153|PSB3B_ARATH Proteasome subunit beta type-3-B
           OS=Arabidopsis thaliana GN=PBC2 PE=1 SV=1
          Length = 204

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 25/33 (75%), Positives = 27/33 (81%)
 Frame = +3

Query: 3   SSVDRDCLSGWGGIVYVVSADQVITRTLKGRMD 101
           SSVDRDCLSGWGG VYVV+  +V  R LKGRMD
Sbjct: 172 SSVDRDCLSGWGGHVYVVTPKEVKERILKGRMD 204


>sp|Q9XI05|PSB3A_ARATH Proteasome subunit beta type-3-A
           OS=Arabidopsis thaliana GN=PBC1 PE=1 SV=1
          Length = 204

 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 23/33 (69%), Positives = 27/33 (81%)
 Frame = +3

Query: 3   SSVDRDCLSGWGGIVYVVSADQVITRTLKGRMD 101
           SSVDRDCLSGWGG VY+V+  ++  R LKGRMD
Sbjct: 172 SSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 204


>sp|Q9Y7T8|PSB3_SCHPO Probable proteasome subunit beta type-3
           OS=Schizosaccharomyces pombe GN=SPCC63.12c PE=2 SV=1
          Length = 204

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 19/30 (63%), Positives = 25/30 (83%)
 Frame = +3

Query: 12  DRDCLSGWGGIVYVVSADQVITRTLKGRMD 101
           DRDC+SGWG +VYV++AD+ I R +KGR D
Sbjct: 175 DRDCISGWGCVVYVITADKCIKRLVKGRQD 204


>sp|Q9LST7|PSB3_ORYSJ Proteasome subunit beta type-3 OS=Oryza sativa
           subsp. japonica GN=PBC1 PE=2 SV=1
          Length = 204

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 21/33 (63%), Positives = 25/33 (75%)
 Frame = +3

Query: 3   SSVDRDCLSGWGGIVYVVSADQVITRTLKGRMD 101
           SSVDRDCLSGWGG V +V+  +V    +KGRMD
Sbjct: 172 SSVDRDCLSGWGGFVLLVTPTEVKECVIKGRMD 204


>sp|Q55D66|PSB3_DICDI Proteasome subunit beta type-3
           OS=Dictyostelium discoideum GN=psmB3 PE=3 SV=1
          Length = 205

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 20/33 (60%), Positives = 26/33 (78%)
 Frame = +3

Query: 3   SSVDRDCLSGWGGIVYVVSADQVITRTLKGRMD 101
           +S+DRD LSGWG IV+V++  QVIT+ L GR D
Sbjct: 173 ASLDRDALSGWGAIVHVITPTQVITKKLLGRQD 205


>sp|P25451|PSB3_YEAST Proteasome component PUP3 OS=Saccharomyces
           cerevisiae GN=PUP3 PE=1 SV=1
          Length = 205

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 17/33 (51%), Positives = 24/33 (72%)
 Frame = +3

Query: 3   SSVDRDCLSGWGGIVYVVSADQVITRTLKGRMD 101
           ++ DRD LSGWG +VY++  D+V+ R LK R D
Sbjct: 173 NAADRDALSGWGAVVYIIKKDEVVKRYLKMRQD 205


>sp|Q9XYN7|PSB3_DROME Proteasome subunit beta type-3 OS=Drosophila
           melanogaster GN=Prosbeta3 PE=1 SV=1
          Length = 205

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 17/33 (51%), Positives = 24/33 (72%)
 Frame = +3

Query: 3   SSVDRDCLSGWGGIVYVVSADQVITRTLKGRMD 101
           ++ DRD +SGWG  VY++  D++  RTLK RMD
Sbjct: 173 NAFDRDAMSGWGATVYIIEKDKITERTLKTRMD 205


>sp|Q9R1P1|PSB3_MOUSE Proteasome subunit beta type-3 OS=Mus musculus
           GN=Psmb3 PE=1 SV=1
          Length = 205

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 19/33 (57%), Positives = 26/33 (78%)
 Frame = +3

Query: 3   SSVDRDCLSGWGGIVYVVSADQVITRTLKGRMD 101
           ++VDRD +SG G IV+V+  D++ TRTLK RMD
Sbjct: 173 NAVDRDAVSGMGVIVHVIEKDKITTRTLKARMD 205


>sp|P40112|PSB3_RAT Proteasome subunit beta type-3 OS=Rattus
           norvegicus GN=Psmb3 PE=1 SV=1
          Length = 205

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 18/33 (54%), Positives = 26/33 (78%)
 Frame = +3

Query: 3   SSVDRDCLSGWGGIVYVVSADQVITRTLKGRMD 101
           ++VDRD +SG G IV+++  D++ TRTLK RMD
Sbjct: 173 NAVDRDAVSGMGVIVHIIEKDKITTRTLKARMD 205
tr_hit_id A9SWQ3
Definition tr|A9SWQ3|A9SWQ3_PHYPA Proteasome subunit beta type OS=Physcomitrella patens subsp. patens
Align length 33
Score (bit) 62.4
E-value 1.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945663|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_A20, 5'
         (263 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SWQ3|A9SWQ3_PHYPA Proteasome subunit beta type OS=Physcomit...    62   1e-08
tr|A9NRN1|A9NRN1_PICSI Proteasome subunit beta type OS=Picea sit...    61   2e-08
tr|A9SYM6|A9SYM6_PHYPA Proteasome subunit beta type OS=Physcomit...    60   4e-08
tr|B7FMI9|B7FMI9_MEDTR Putative uncharacterized protein OS=Medic...    54   5e-06
tr|A7NVG1|A7NVG1_VITVI Chromosome chr18 scaffold_1, whole genome...    54   5e-06
tr|A9PGT7|A9PGT7_POPTR Proteasome subunit beta type OS=Populus t...    52   1e-05
tr|B0CRH1|B0CRH1_LACBS Proteasome subunit beta type OS=Laccaria ...    52   1e-05
tr|B3RQH7|B3RQH7_TRIAD Putative uncharacterized protein OS=Trich...    52   2e-05
tr|Q01FQ8|Q01FQ8_OSTTA Proteasome subunit beta type OS=Ostreococ...    50   4e-05
tr|A9UYD3|A9UYD3_MONBE Proteasome subunit beta type OS=Monosiga ...    50   4e-05
tr|Q5KP95|Q5KP95_CRYNE Proteasome subunit beta type OS=Cryptococ...    50   4e-05
tr|B7G8Z3|B7G8Z3_PHATR Predicted protein OS=Phaeodactylum tricor...    50   6e-05
tr|B4FMZ5|B4FMZ5_MAIZE Putative uncharacterized protein OS=Zea m...    50   6e-05
tr|B6MDC1|B6MDC1_BRAFL Putative uncharacterized protein OS=Branc...    50   6e-05
tr|B8LDK1|B8LDK1_THAPS Predicted protein OS=Thalassiosira pseudo...    49   1e-04
tr|Q4U969|Q4U969_THEAN Proteasome subunit beta type OS=Theileria...    49   1e-04
tr|Q4N1V9|Q4N1V9_THEPA Proteasome subunit beta type OS=Theileria...    49   1e-04
tr|A7S085|A7S085_NEMVE Proteasome subunit beta type OS=Nematoste...    49   1e-04
tr|Q7RBG8|Q7RBG8_PLAYO 7006-8626 OS=Plasmodium yoelii yoelii GN=...    49   1e-04
tr|Q4YWM8|Q4YWM8_PLABE Beta3 proteasome subunit, putative OS=Pla...    49   1e-04
tr|Q4YKV8|Q4YKV8_PLABE Putative uncharacterized protein (Fragmen...    49   1e-04
tr|Q4Y4B4|Q4Y4B4_PLACH Beta3 proteasome subunit, putative OS=Pla...    49   1e-04
tr|Q8RVS3|Q8RVS3_ORYSA Proteasome subunit (Fragment) OS=Oryza sa...    49   2e-04
tr|Q6H800|Q6H800_ORYSJ Proteasome subunit beta type OS=Oryza sat...    49   2e-04
tr|Q0E3C6|Q0E3C6_ORYSJ Os02g0182500 protein (Fragment) OS=Oryza ...    49   2e-04
tr|A3A3U3|A3A3U3_ORYSJ Proteasome subunit beta type OS=Oryza sat...    49   2e-04
tr|A2X1N4|A2X1N4_ORYSI Proteasome subunit beta type OS=Oryza sat...    49   2e-04
tr|B6K6A1|B6K6A1_SCHJP 20S proteasome component beta 3 OS=Schizo...    49   2e-04
tr|A8HWI6|A8HWI6_CHLRE Proteasome subunit beta type OS=Chlamydom...    48   3e-04
tr|Q59PQ2|Q59PQ2_CANAL Putative uncharacterized protein PUP3 (Pu...    48   3e-04

>tr|A9SWQ3|A9SWQ3_PHYPA Proteasome subunit beta type
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_166946 PE=3 SV=1
          Length = 204

 Score = 62.4 bits (150), Expect = 1e-08
 Identities = 27/33 (81%), Positives = 32/33 (96%)
 Frame = +3

Query: 3   SSVDRDCLSGWGGIVYVVSADQVITRTLKGRMD 101
           +SVDRDC+SGWGGIV+VV+ DQVIT+TLKGRMD
Sbjct: 172 ASVDRDCISGWGGIVHVVTPDQVITKTLKGRMD 204


>tr|A9NRN1|A9NRN1_PICSI Proteasome subunit beta type OS=Picea
           sitchensis PE=2 SV=1
          Length = 204

 Score = 61.2 bits (147), Expect = 2e-08
 Identities = 28/33 (84%), Positives = 30/33 (90%)
 Frame = +3

Query: 3   SSVDRDCLSGWGGIVYVVSADQVITRTLKGRMD 101
           SS+DRDCLSGWGG VYVVS +QVI RTLKGRMD
Sbjct: 172 SSIDRDCLSGWGGHVYVVSPNQVIERTLKGRMD 204


>tr|A9SYM6|A9SYM6_PHYPA Proteasome subunit beta type
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_167139 PE=3 SV=1
          Length = 204

 Score = 60.5 bits (145), Expect = 4e-08
 Identities = 26/33 (78%), Positives = 32/33 (96%)
 Frame = +3

Query: 3   SSVDRDCLSGWGGIVYVVSADQVITRTLKGRMD 101
           +SVDRDC+SGWGGIV+VV+ +QVIT+TLKGRMD
Sbjct: 172 ASVDRDCISGWGGIVHVVTPNQVITKTLKGRMD 204


>tr|B7FMI9|B7FMI9_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 204

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 25/33 (75%), Positives = 27/33 (81%)
 Frame = +3

Query: 3   SSVDRDCLSGWGGIVYVVSADQVITRTLKGRMD 101
           SSVDRDCLSGWGG VYVV+  +V  R LKGRMD
Sbjct: 172 SSVDRDCLSGWGGHVYVVTPTEVKERILKGRMD 204


>tr|A7NVG1|A7NVG1_VITVI Chromosome chr18 scaffold_1, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00015420001
           PE=4 SV=1
          Length = 191

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 25/33 (75%), Positives = 27/33 (81%)
 Frame = +3

Query: 3   SSVDRDCLSGWGGIVYVVSADQVITRTLKGRMD 101
           SSVDRDCLSGWGG VYVV+  +V  R LKGRMD
Sbjct: 159 SSVDRDCLSGWGGHVYVVTPTEVKERILKGRMD 191


>tr|A9PGT7|A9PGT7_POPTR Proteasome subunit beta type OS=Populus
           trichocarpa PE=2 SV=1
          Length = 204

 Score = 52.0 bits (123), Expect = 1e-05
 Identities = 21/33 (63%), Positives = 27/33 (81%)
 Frame = +3

Query: 3   SSVDRDCLSGWGGIVYVVSADQVITRTLKGRMD 101
           +SVDRDCLSGWGG +Y+V+ D +  + LKGRMD
Sbjct: 172 ASVDRDCLSGWGGHIYIVTPDDIKEKILKGRMD 204


>tr|B0CRH1|B0CRH1_LACBS Proteasome subunit beta type OS=Laccaria
           bicolor (strain S238N-H82) GN=LACBIDRAFT_291705 PE=3
           SV=1
          Length = 208

 Score = 52.0 bits (123), Expect = 1e-05
 Identities = 22/33 (66%), Positives = 29/33 (87%)
 Frame = +3

Query: 3   SSVDRDCLSGWGGIVYVVSADQVITRTLKGRMD 101
           ++VDRD  SGWG IV+V++ D+V+TRTLKGRMD
Sbjct: 176 NAVDRDAYSGWGCIVHVITKDKVVTRTLKGRMD 208


>tr|B3RQH7|B3RQH7_TRIAD Putative uncharacterized protein
           OS=Trichoplax adhaerens GN=TRIADDRAFT_50102 PE=4 SV=1
          Length = 191

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 21/33 (63%), Positives = 27/33 (81%)
 Frame = +3

Query: 3   SSVDRDCLSGWGGIVYVVSADQVITRTLKGRMD 101
           ++VDRDC+SGWGGIVYV+  D+V  + LK RMD
Sbjct: 159 NAVDRDCVSGWGGIVYVIEKDKVTEKILKARMD 191


>tr|Q01FQ8|Q01FQ8_OSTTA Proteasome subunit beta type OS=Ostreococcus
           tauri GN=Ot01g05210 PE=3 SV=1
          Length = 203

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 22/33 (66%), Positives = 27/33 (81%)
 Frame = +3

Query: 3   SSVDRDCLSGWGGIVYVVSADQVITRTLKGRMD 101
           + V+RDCLSGWGGIV +++ D  ITRTLK RMD
Sbjct: 171 AGVNRDCLSGWGGIVTLITKDGPITRTLKNRMD 203


>tr|A9UYD3|A9UYD3_MONBE Proteasome subunit beta type OS=Monosiga
           brevicollis GN=32253 PE=3 SV=1
          Length = 211

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 20/30 (66%), Positives = 26/30 (86%)
 Frame = +3

Query: 12  DRDCLSGWGGIVYVVSADQVITRTLKGRMD 101
           DRD L+GWGG+V++V  D+V TRTL+GRMD
Sbjct: 182 DRDALAGWGGVVHIVEKDKVTTRTLRGRMD 211