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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945669
Clone id YMU02A01NGRL0010_B02
Library
Length 534
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_B02. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GGGCTTGCTACTTCTTACTGCGAGCCATGGCAGCTGCGATGTCCACATCCCTATCTACGA
TTTCTTCGTCTTTAATCGGGCAGTCACCGGATGCTACAAAGTTGAGAGCTCCAGCGCGAG
CCATTGCAGGCCTTCCAGCTTTCCCAACTTTTCACATCTCGACCTCCTCACAAAGGCAAG
AAAAGAAGGGGAGTTCTGCAGGTGAACAGGTGGCATTGCCTGCTGCAGTGCTTGTGGCTG
CGGTTGCGCAAGGGGGGTCTGCGATTGCCTTGGTGGATGATCGGCTGTCAACGGAGGGTA
CTGGCCTTGGTCTTGGAGTTAGCAATCCTTTGCTCATCTGGATCCTCCTTGGTGTTGCAA
CCCTAATCTGGGCCCTTTTCTTTGTATATTCGTCCCGCCTCCCCCCTGGCGATGATGACT
CGGGTCTCTCATTGTAGGGCTGCCTCCATGCATGTGCCCTTCAATTGCTTTGTATGAAAT
GCATAGACTGTGAAAACTTCAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q41387
Definition sp|Q41387|PSBW_SPIOL Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea
Align length 58
Score (bit) 74.3
E-value 3.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945669|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_B02, 5'
         (500 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q41387|PSBW_SPIOL Photosystem II reaction center W protein, c...    74   3e-13
sp|Q5ZBY9|PSBW_ORYSJ Photosystem II reaction center W protein, c...    74   4e-13
sp|Q39194|PSBW_ARATH Photosystem II reaction center W protein, c...    73   8e-13
sp|Q9SPI9|PSBW_CHLRE Photosystem II reaction center W protein, c...    54   3e-07
sp|P55967|PSBW_WHEAT Photosystem II reaction center W protein (F...    35   0.19 
sp|Q8ZPK5|CLCB_SALTY Voltage-gated ClC-type chloride channel clc...    27   2.1  
sp|O70554|SPR2B_MOUSE Small proline-rich protein 2B OS=Mus muscu...    31   2.8  
sp|Q8Z6Y0|CLCB_SALTI Voltage-gated ClC-type chloride channel clc...    27   3.4  
sp|A8AGW0|CLCB_CITK8 Voltage-gated ClC-type chloride channel clc...    25   7.2  

>sp|Q41387|PSBW_SPIOL Photosystem II reaction center W protein,
           chloroplastic OS=Spinacia oleracea GN=psbW PE=1 SV=1
          Length = 137

 Score = 74.3 bits (181), Expect = 3e-13
 Identities = 39/58 (67%), Positives = 47/58 (81%)
 Frame = +3

Query: 261 AIALVDDRLSTEGTGLGLGVSNPLLIWILLGVATLIWALFFVYSSRLPPGDDDSGLSL 434
           A+ALVD+R+STEGTGL  G+SN LL WIL GV  LIWAL+FVY+S L   D++SGLSL
Sbjct: 81  AMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFVYASGLEE-DEESGLSL 137


>sp|Q5ZBY9|PSBW_ORYSJ Photosystem II reaction center W protein,
           chloroplastic OS=Oryza sativa subsp. japonica GN=PSBW
           PE=2 SV=1
          Length = 124

 Score = 73.9 bits (180), Expect = 4e-13
 Identities = 36/58 (62%), Positives = 46/58 (79%)
 Frame = +3

Query: 261 AIALVDDRLSTEGTGLGLGVSNPLLIWILLGVATLIWALFFVYSSRLPPGDDDSGLSL 434
           A+ALVD+R+STEGTGL LG+SN LL WILLGV  LIW+L+ +Y+S L   ++  GLSL
Sbjct: 67  AMALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTIYTSDLEEDEESGGLSL 124


>sp|Q39194|PSBW_ARATH Photosystem II reaction center W protein,
           chloroplastic OS=Arabidopsis thaliana GN=PSBW PE=1 SV=2
          Length = 133

 Score = 72.8 bits (177), Expect = 8e-13
 Identities = 38/58 (65%), Positives = 45/58 (77%)
 Frame = +3

Query: 261 AIALVDDRLSTEGTGLGLGVSNPLLIWILLGVATLIWALFFVYSSRLPPGDDDSGLSL 434
           A+ALVD+R+STEGTGL  G+SN LL WIL GV  LIW  FFVY+S L   D++SGLSL
Sbjct: 77  AMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFFFVYTSSLEE-DEESGLSL 133


>sp|Q9SPI9|PSBW_CHLRE Photosystem II reaction center W protein,
           chloroplastic OS=Chlamydomonas reinhardtii GN=psbW PE=1
           SV=1
          Length = 115

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 27/59 (45%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
 Frame = +3

Query: 261 AIALVDDRLSTEGTGLGLGVSNPLLIWILLGVATLIWALFFVYSSRLPPGDD-DSGLSL 434
           A ALVD+R++ +GTG   GV++P+L W+LLGV   +WA++F+    L   +D D GL L
Sbjct: 57  AFALVDERMNGDGTGRPFGVNDPVLGWVLLGVFGTMWAIWFIGQKDLGDFEDADDGLKL 115


>sp|P55967|PSBW_WHEAT Photosystem II reaction center W protein
           (Fragment) OS=Triticum aestivum GN=psbW PE=1 SV=1
          Length = 20

 Score = 35.0 bits (79), Expect = 0.19
 Identities = 15/19 (78%), Positives = 18/19 (94%)
 Frame = +3

Query: 270 LVDDRLSTEGTGLGLGVSN 326
           LVD+R+STEGTGL LG+SN
Sbjct: 1   LVDERMSTEGTGLSLGLSN 19


>sp|Q8ZPK5|CLCB_SALTY Voltage-gated ClC-type chloride channel clcB
           OS=Salmonella typhimurium GN=clcB PE=3 SV=2
          Length = 417

 Score = 26.6 bits (57), Expect(2) = 2.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 401 PPWR**LGSLIVGLPPCMCPSI 466
           PPW+  LG LIVGL   + P++
Sbjct: 256 PPWQLALGGLIVGLLSLLTPTV 277



 Score = 23.1 bits (48), Expect(2) = 2.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 300 TGLGLGVSNPLLIWIL 347
           TGL  G+  PLL+W++
Sbjct: 227 TGLVAGLCGPLLMWLM 242


>sp|O70554|SPR2B_MOUSE Small proline-rich protein 2B OS=Mus musculus
           GN=Sprr2b PE=2 SV=1
          Length = 98

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 17/41 (41%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = +2

Query: 344 PPWCCNPNLGPFLCIFVPPPPWR**LGSLIVGLPPCM--CP 460
           PP CC P   P  C   PP PW+       V  PPC   CP
Sbjct: 56  PPVCCEPCPPPVCCEPCPPQPWQ--PKCPPVQFPPCQQKCP 94


>sp|Q8Z6Y0|CLCB_SALTI Voltage-gated ClC-type chloride channel clcB
           OS=Salmonella typhi GN=clcB PE=3 SV=2
          Length = 417

 Score = 26.6 bits (57), Expect(2) = 3.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 401 PPWR**LGSLIVGLPPCMCPSI 466
           PPW+  LG LIVGL   + P++
Sbjct: 256 PPWQLALGGLIVGLLSLLTPTV 277



 Score = 22.3 bits (46), Expect(2) = 3.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 300 TGLGLGVSNPLLIWIL 347
           TGL  G+  PLL+W++
Sbjct: 227 TGLVAGLWGPLLMWLM 242


>sp|A8AGW0|CLCB_CITK8 Voltage-gated ClC-type chloride channel clcB
           OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83
           / SGSC4696) GN=clcB PE=3 SV=1
          Length = 417

 Score = 25.0 bits (53), Expect(2) = 7.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 401 PPWR**LGSLIVGLPPCMCPSI 466
           PPW+  LG  IVGL   + P++
Sbjct: 256 PPWQLALGGFIVGLLSLLTPAV 277



 Score = 22.7 bits (47), Expect(2) = 7.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 300 TGLGLGVSNPLLIWIL 347
           TGL  GV  PL +W++
Sbjct: 227 TGLVAGVCGPLFMWLM 242
tr_hit_id A9SEQ6
Definition tr|A9SEQ6|A9SEQ6_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 111
Score (bit) 103.0
E-value 3.0e-21
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945669|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_B02, 5'
         (500 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SEQ6|A9SEQ6_PHYPA Predicted protein (Fragment) OS=Physcomit...   103   3e-21
tr|A9SEQ5|A9SEQ5_PHYPA Predicted protein OS=Physcomitrella paten...    95   2e-18
tr|Q9AXN9|Q9AXN9_PHYPA PSII subunit PsbW (Fragment) OS=Physcomit...    91   4e-17
tr|A9T8Y1|A9T8Y1_PHYPA Predicted protein (Fragment) OS=Physcomit...    91   4e-17
tr|A9PJA9|A9PJA9_POPJC Putative uncharacterized protein OS=Popul...    79   1e-13
tr|A9NL01|A9NL01_PICSI Putative uncharacterized protein OS=Picea...    79   1e-13
tr|A9NLC2|A9NLC2_PICSI Putative uncharacterized protein OS=Picea...    78   2e-13
tr|A9PEP9|A9PEP9_POPTR Putative uncharacterized protein OS=Popul...    77   3e-13
tr|A3B5P7|A3B5P7_ORYSJ Putative uncharacterized protein OS=Oryza...    77   6e-13
tr|B6TMB3|B6TMB3_MAIZE Photosystem II reaction center W protein ...    76   8e-13
tr|B6TM37|B6TM37_MAIZE Photosystem II reaction center W protein ...    76   8e-13
tr|B6T2W4|B6T2W4_MAIZE Photosystem II reaction center W protein ...    76   8e-13
tr|B6SMK2|B6SMK2_MAIZE Photosystem II reaction center W protein ...    76   8e-13
tr|B4FUI4|B4FUI4_MAIZE Photosystem II reaction center W protein ...    76   8e-13
tr|A7QVP6|A7QVP6_VITVI Chromosome chr14 scaffold_190, whole geno...    76   8e-13
tr|A5C3A9|A5C3A9_VITVI Putative uncharacterized protein OS=Vitis...    76   8e-13
tr|B7FHC2|B7FHC2_MEDTR Putative uncharacterized protein OS=Medic...    75   1e-12
tr|B7E500|B7E500_ORYSJ cDNA clone:001-011-D03, full insert seque...    74   4e-12
tr|A2WVK4|A2WVK4_ORYSI Putative uncharacterized protein OS=Oryza...    74   4e-12
tr|A1YMY4|A1YMY4_BRACM Component of 6.1 kDa polypeptide of photo...    73   6e-12
tr|Q41908|Q41908_ARATH Photosystem II 7kD protein OS=Arabidopsis...    73   8e-12
tr|Q9AXN8|Q9AXN8_PHYPA PSII subunit PsbW (Fragment) OS=Physcomit...    72   1e-11
tr|A7PUM2|A7PUM2_VITVI Chromosome chr7 scaffold_31, whole genome...    72   2e-11
tr|Q8W536|Q8W536_9FABA Photosystem II reaction center (Fragment)...    69   2e-10
tr|Q9AXP0|Q9AXP0_PHYPA PSII subunit PsbW (Fragment) OS=Physcomit...    68   2e-10
tr|A8JFQ7|A8JFQ7_CHLRE Photosystem II reaction center W protein ...    54   3e-06
tr|Q944K9|Q944K9_ARATH At2g30570/T6B20.8 OS=Arabidopsis thaliana...    50   8e-05
tr|B5A4J5|B5A4J5_GYMST Photosystem II reaction center W protein ...    50   8e-05
tr|A2SY30|A2SY30_MESVI Photosystem II reaction center W protein ...    47   4e-04
tr|A4RT20|A4RT20_OSTLU Photosystem II reaction center W protein,...    47   5e-04

>tr|A9SEQ6|A9SEQ6_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_128580 PE=4 SV=1
          Length = 142

 Score =  103 bits (258), Expect = 3e-21
 Identities = 57/111 (51%), Positives = 67/111 (60%), Gaps = 1/111 (0%)
 Frame = +3

Query: 105 RAPARAIAGLPAFPTFHISTSSQRQEK-KGSSAGEQXXXXXXXXXXXXXQGGSAIALVDD 281
           RA AR +AG+P      I  S +++E  KG   G                     ALVD+
Sbjct: 32  RAAARPVAGVPVLAMPRIVCSLEKKESNKGDVNGLPQLAAAVTSAATMAYAHPVFALVDE 91

Query: 282 RLSTEGTGLGLGVSNPLLIWILLGVATLIWALFFVYSSRLPPGDDDSGLSL 434
           RLSTEGTGLGLGVSNP L WIL+GV  L+WA++F YSS LP GDDDSGLSL
Sbjct: 92  RLSTEGTGLGLGVSNPKLTWILVGVTALVWAVYFTYSSTLPEGDDDSGLSL 142


>tr|A9SEQ5|A9SEQ5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_232256 PE=4 SV=1
          Length = 64

 Score = 94.7 bits (234), Expect = 2e-18
 Identities = 44/56 (78%), Positives = 49/56 (87%)
 Frame = +3

Query: 267 ALVDDRLSTEGTGLGLGVSNPLLIWILLGVATLIWALFFVYSSRLPPGDDDSGLSL 434
           ALVD+RLSTEGTGLGLGVSNP L WIL+GV  L+WA++F YSS LP GDDDSGLSL
Sbjct: 9   ALVDERLSTEGTGLGLGVSNPKLTWILVGVTALVWAVYFTYSSTLPEGDDDSGLSL 64


>tr|Q9AXN9|Q9AXN9_PHYPA PSII subunit PsbW (Fragment)
           OS=Physcomitrella patens PE=2 SV=1
          Length = 69

 Score = 90.5 bits (223), Expect = 4e-17
 Identities = 43/56 (76%), Positives = 47/56 (83%)
 Frame = +3

Query: 267 ALVDDRLSTEGTGLGLGVSNPLLIWILLGVATLIWALFFVYSSRLPPGDDDSGLSL 434
           ALVD+RLSTEGTGLGLG+SN  L WIL+GV  LIWAL+F YSS LP GDDDSGL L
Sbjct: 14  ALVDERLSTEGTGLGLGISNTKLTWILVGVTALIWALYFSYSSTLPEGDDDSGLDL 69


>tr|A9T8Y1|A9T8Y1_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_9752 PE=4 SV=1
          Length = 67

 Score = 90.5 bits (223), Expect = 4e-17
 Identities = 43/56 (76%), Positives = 47/56 (83%)
 Frame = +3

Query: 267 ALVDDRLSTEGTGLGLGVSNPLLIWILLGVATLIWALFFVYSSRLPPGDDDSGLSL 434
           ALVD+RLSTEGTGLGLG+SN  L WIL+GV  LIWAL+F YSS LP GDDDSGL L
Sbjct: 12  ALVDERLSTEGTGLGLGISNTKLTWILVGVTALIWALYFSYSSTLPEGDDDSGLDL 67


>tr|A9PJA9|A9PJA9_POPJC Putative uncharacterized protein OS=Populus
           jackii PE=2 SV=1
          Length = 133

 Score = 79.0 bits (193), Expect = 1e-13
 Identities = 39/58 (67%), Positives = 48/58 (82%)
 Frame = +3

Query: 261 AIALVDDRLSTEGTGLGLGVSNPLLIWILLGVATLIWALFFVYSSRLPPGDDDSGLSL 434
           A+ALVD+RLSTEGTGL  G+SN LL+WILLGV   IW+L+FVY+S L   D+DSG+SL
Sbjct: 77  ALALVDERLSTEGTGLPFGLSNNLLVWILLGVFAFIWSLYFVYTSSLDE-DEDSGMSL 133


>tr|A9NL01|A9NL01_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 146

 Score = 79.0 bits (193), Expect = 1e-13
 Identities = 41/58 (70%), Positives = 47/58 (81%)
 Frame = +3

Query: 261 AIALVDDRLSTEGTGLGLGVSNPLLIWILLGVATLIWALFFVYSSRLPPGDDDSGLSL 434
           A ALVD+RLSTEGTGLGLG+SNPLL WIL+GV TLIW L+F   S +   D+DSGLSL
Sbjct: 90  AFALVDERLSTEGTGLGLGLSNPLLGWILVGVFTLIWILYFTTYSNVKE-DEDSGLSL 146


>tr|A9NLC2|A9NLC2_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 146

 Score = 78.2 bits (191), Expect = 2e-13
 Identities = 41/58 (70%), Positives = 47/58 (81%)
 Frame = +3

Query: 261 AIALVDDRLSTEGTGLGLGVSNPLLIWILLGVATLIWALFFVYSSRLPPGDDDSGLSL 434
           A ALVD+RLSTEGTGLGLG+SNPLL WIL+GV TLIW L+F   S +   D+DSGLSL
Sbjct: 90  AFALVDERLSTEGTGLGLGLSNPLLGWILVGVFTLIWILYFTTYSGVKE-DEDSGLSL 146


>tr|A9PEP9|A9PEP9_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 134

 Score = 77.4 bits (189), Expect = 3e-13
 Identities = 38/58 (65%), Positives = 48/58 (82%)
 Frame = +3

Query: 261 AIALVDDRLSTEGTGLGLGVSNPLLIWILLGVATLIWALFFVYSSRLPPGDDDSGLSL 434
           A+ALVD+R+STEGTGL  G+SN LL+WILLGV  LIWAL+F Y++ L   D++SGLSL
Sbjct: 78  ALALVDERMSTEGTGLPFGLSNNLLVWILLGVFALIWALYFTYTATLEE-DEESGLSL 134


>tr|A3B5P7|A3B5P7_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_018369 PE=4 SV=1
          Length = 128

 Score = 76.6 bits (187), Expect = 6e-13
 Identities = 38/59 (64%), Positives = 47/59 (79%)
 Frame = +3

Query: 258 SAIALVDDRLSTEGTGLGLGVSNPLLIWILLGVATLIWALFFVYSSRLPPGDDDSGLSL 434
           +A+ALVD+R+STEGTGL LG+SN LL WILLGV  LIW+L+ VY+S L   D+  GLSL
Sbjct: 70  AAMALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTVYTSTLDDDDESGGLSL 128


>tr|B6TMB3|B6TMB3_MAIZE Photosystem II reaction center W protein
           OS=Zea mays PE=2 SV=1
          Length = 127

 Score = 76.3 bits (186), Expect = 8e-13
 Identities = 40/57 (70%), Positives = 47/57 (82%)
 Frame = +3

Query: 264 IALVDDRLSTEGTGLGLGVSNPLLIWILLGVATLIWALFFVYSSRLPPGDDDSGLSL 434
           +ALVD+R+STEGTGL LG+SN LL WILLGV  LIW+L+ VY+S L   DDDSGLSL
Sbjct: 72  LALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTVYTSTLDE-DDDSGLSL 127