NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945674
Clone id YMU02A01NGRL0010_B08
Library
Length 450
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_B08. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
AATAAACTGGATGTTGGTGAAGCTTTAGCAAAACATCTATCAGGTTGTGGGTTCAAGTCA
AGTGTGAGAGAGGAGCCAGTTGGAACTTAGAGGAGCCGCTTTTGAGGCTGTATCGCTAAT
TTTAGCTGCTGCGTCCAAAGCTGAATTTAACTGATATACAGTGATGCAACTGTAGTTCCC
TGCTCTAAGAACATCGACAAAATTATGTCGCCAAGGGAATCTAATCTGCTCTCTAGTGTT
AACTGATCCAAGTTTTTGTAACCTGAGGCTCCAGTAGAGTCTTTCTTCGTTTGAAGCTTG
ACACCATTTTTTCTTGTCAACTTCCCATTTGGAACGTTGGAAAATGTTGGGCAGCCTTTT
TAAAGTTTGTGATAAAGAGGCTATAAATTGAGGTTTGCAAAACACTTGCATTGTATCTAC
NAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9KIV0
Definition sp|Q9KIV0|HGBC_HAEIN Hemoglobin-binding protein C OS=Haemophilus influenzae
Align length 35
Score (bit) 37.0
E-value 0.031
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945674|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_B08, 5'
         (421 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9KIV0|HGBC_HAEIN Hemoglobin-binding protein C OS=Haemophilus...    37   0.031
sp|P16014|SCG1_MOUSE Secretogranin-1 OS=Mus musculus GN=Chgb PE=...    32   1.3  
sp|Q5X7Z1|TRMD_LEGPA tRNA (guanine-N(1)-)-methyltransferase OS=L...    31   2.2  
sp|Q5WZE2|TRMD_LEGPL tRNA (guanine-N(1)-)-methyltransferase OS=L...    30   2.9  
sp|Q5ZYH6|TRMD_LEGPH tRNA (guanine-N(1)-)-methyltransferase OS=L...    30   2.9  
sp|P05475|YKP9_KLULA Uncharacterized killer plasmid pGKl-2 prote...    30   3.0  
sp|Q06683|IRC3_YEAST Putative ATP-dependent helicase IRC3 OS=Sac...    30   3.0  
sp|P04276|VTDB_RAT Vitamin D-binding protein OS=Rattus norvegicu...    30   3.8  
sp|Q92441|MET17_KLULA Protein MET17 OS=Kluyveromyces lactis GN=M...    30   3.8  
sp|A9L330|GCSP_SHEB9 Glycine dehydrogenase [decarboxylating] OS=...    30   3.8  
sp|A6WSL1|GCSP_SHEB8 Glycine dehydrogenase [decarboxylating] OS=...    30   3.8  
sp|A1RFY8|GCSP_SHESW Glycine dehydrogenase [decarboxylating] OS=...    30   4.9  
sp|A4YAD8|GCSP_SHEPC Glycine dehydrogenase [decarboxylating] OS=...    30   4.9  
sp|Q9SZC9|AHM6_ARATH Putative copper-transporting ATPase PAA1 OS...    30   5.0  
sp|P44809|HGP2_HAEIN Probable hemoglobin and hemoglobin-haptoglo...    29   6.4  
sp|P56114|GATA_HELPY Glutamyl-tRNA(Gln) amidotransferase subunit...    29   6.4  
sp|Q9ZL13|GATA_HELPJ Glutamyl-tRNA(Gln) amidotransferase subunit...    29   6.4  
sp|Q1CT39|GATA_HELPH Glutamyl-tRNA(Gln) amidotransferase subunit...    29   6.4  
sp|Q17WM2|GATA_HELAH Glutamyl-tRNA(Gln) amidotransferase subunit...    29   6.4  

>sp|Q9KIV0|HGBC_HAEIN Hemoglobin-binding protein C OS=Haemophilus
           influenzae GN=hgbC PE=3 SV=1
          Length = 993

 Score = 37.0 bits (84), Expect = 0.031
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = -3

Query: 350 PTFSNVPNGKLTRKNGVKLQTKKDSTGASGYKNLD 246
           PT   + NGK+TR+NG  LQ K+  T A G K  D
Sbjct: 376 PTGLKLTNGKITRRNGTDLQFKEKGTAADGTKTYD 410


>sp|P16014|SCG1_MOUSE Secretogranin-1 OS=Mus musculus GN=Chgb PE=1
           SV=2
          Length = 677

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -2

Query: 366 TLKRLPNIFQRSKWEVDKKKWCQASNE-ERLYWSLRLQKLGSVNTREQIRFPWR 208
           T KR P    +SKW+  +K +     E ++  W  + ++LG   +RE++RFP R
Sbjct: 453 TAKRYP----QSKWQEQEKNYLNYGEEGDQGRWWQQEEQLGPEESREEVRFPDR 502


>sp|Q5X7Z1|TRMD_LEGPA tRNA (guanine-N(1)-)-methyltransferase
           OS=Legionella pneumophila (strain Paris) GN=trmD PE=3
           SV=1
          Length = 250

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
 Frame = -3

Query: 359 KGCPTFSNVPNGKLTRKNGVK---LQTKKDSTGASGYKNLDQLTLESRLD---SLGDIIL 198
           + C T    P GK+ R+N +K   +Q +     A  Y+ +D+  +   +D   SLGD +L
Sbjct: 81  ENCKTIYLSPQGKVVRQNDLKQIAIQKQSLLFVAGRYEGIDERIINHHIDEEWSLGDFVL 140

Query: 197 S 195
           S
Sbjct: 141 S 141


>sp|Q5WZE2|TRMD_LEGPL tRNA (guanine-N(1)-)-methyltransferase
           OS=Legionella pneumophila (strain Lens) GN=trmD PE=3
           SV=1
          Length = 250

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
 Frame = -3

Query: 359 KGCPTFSNVPNGKLTRKNGVK-LQTKKDST--GASGYKNLDQLTLESRLD---SLGDIIL 198
           + C T    P GK+ R+N +K +  +K S    A  Y+ +D+  +   +D   SLGD +L
Sbjct: 81  ENCKTIYLSPQGKVVRQNDLKQIAAQKQSLLFVAGRYEGIDERIISHHVDEEWSLGDFVL 140

Query: 197 S 195
           S
Sbjct: 141 S 141


>sp|Q5ZYH6|TRMD_LEGPH tRNA (guanine-N(1)-)-methyltransferase
           OS=Legionella pneumophila subsp. pneumophila (strain
           Philadelphia 1 / ATCC 33152 / DSM 7513) GN=trmD PE=3
           SV=2
          Length = 250

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
 Frame = -3

Query: 359 KGCPTFSNVPNGKLTRKNGVK-LQTKKDST--GASGYKNLDQLTLESRLD---SLGDIIL 198
           + C T    P GK+ R+N +K +  +K S    A  Y+ +D+  +   +D   SLGD +L
Sbjct: 81  ENCKTIYLSPQGKVVRQNDLKQIAAQKQSLLFVAGRYEGIDERIISHHVDEEWSLGDFVL 140

Query: 197 S 195
           S
Sbjct: 141 S 141


>sp|P05475|YKP9_KLULA Uncharacterized killer plasmid pGKl-2 protein
           9 OS=Kluyveromyces lactis PE=4 SV=1
          Length = 453

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = -2

Query: 390 QFIASLSQTLKRLPNIFQRSKW---EVDKKKWCQASNEERLYWSLRLQKLGSVNTREQIR 220
           +F +   +   RL  IF +S      +D K WC+A  E +  W L      ++  ++ I 
Sbjct: 169 EFNSQYKENYDRLFKIFGKSNHTHKSIDYKTWCKAKRENQQEWPL----FTNIKIKDSIE 224

Query: 219 FP 214
           FP
Sbjct: 225 FP 226


>sp|Q06683|IRC3_YEAST Putative ATP-dependent helicase IRC3
           OS=Saccharomyces cerevisiae GN=IRC3 PE=1 SV=1
          Length = 689

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -1

Query: 106 LKSGSSKFQLAPLSHLT*THNLIDVLLKLHQH 11
           +KS +  FQLAPLS L  T  + +V+LK + H
Sbjct: 240 VKSTADDFQLAPLSSLMNTKEINEVILKTYLH 271


>sp|P04276|VTDB_RAT Vitamin D-binding protein OS=Rattus norvegicus
           GN=Gc PE=1 SV=3
          Length = 476

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -3

Query: 335 VPNGKLTRKNGVKLQTKKDSTGASGYKNLDQLTLE-SRLDSLGDIILSMFLEQGTTVASL 159
           +P  +  +   +KL T KD  G S  + +DQ T E SR   + ++ LS  L+  TT+ +L
Sbjct: 315 MPTAEPLQLPAIKLPTSKDLCGQSATQAMDQYTFELSRRTQVPEVFLSKVLD--TTLKTL 372


>sp|Q92441|MET17_KLULA Protein MET17 OS=Kluyveromyces lactis
           GN=MET17 PE=3 SV=3
          Length = 444

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 33/122 (27%), Positives = 48/122 (39%), Gaps = 12/122 (9%)
 Frame = -3

Query: 356 GCPTFSNVPNGKLTRKNGV------------KLQTKKDSTGASGYKNLDQLTLESRLDSL 213
           G P+ S+  N K   +NG                 + D   ASG + +D L L S L ++
Sbjct: 322 GLPSHSHHENAKKYLENGFGGVLSFGVKDLPNASEESDPFKASGAQVVDNLKLASNLANV 381

Query: 212 GDIILSMFLEQGTTVASLYIS*IQLWTQQLKLAIQPQKRLL*VPTGSSLTLDLNPQPDRC 33
           GD          T V + Y +  Q  T + KLA    K L+ V  G+    D+    +  
Sbjct: 382 GD--------SKTLVIAPYFTTHQQLTDEEKLASGVTKDLIRVSVGTEFIDDIIADFEAS 433

Query: 32  FA 27
           FA
Sbjct: 434 FA 435


>sp|A9L330|GCSP_SHEB9 Glycine dehydrogenase [decarboxylating]
           OS=Shewanella baltica (strain OS195) GN=gcvP PE=3 SV=1
          Length = 962

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 23/79 (29%), Positives = 39/79 (49%)
 Frame = -3

Query: 314 RKNGVKLQTKKDSTGASGYKNLDQLTLESRLDSLGDIILSMFLEQGTTVASLYIS*IQLW 135
           R    ++  + D+ G  G  +LD+ TL + +D+L D+IL      G  VA+L    +   
Sbjct: 404 RALAAEMNLRFDTDGTVGI-SLDETTLRTDIDALFDVILG--AGHGLDVAALDAQIVSQG 460

Query: 134 TQQLKLAIQPQKRLL*VPT 78
           +Q +  A+  Q  +L  PT
Sbjct: 461 SQSIPAALVRQDAILSHPT 479
tr_hit_id A9RPF0
Definition tr|A9RPF0|A9RPF0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 31
Score (bit) 35.8
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945674|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_B08, 5'
         (421 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RPF0|A9RPF0_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.1  
tr|A8NTF7|A8NTF7_COPC7 Putative uncharacterized protein OS=Copri...    33   9.2  
tr|A5IHJ7|A5IHJ7_LEGPC tRNA (guanine-N(1)-)-methyltransferase OS...    33   9.2  

>tr|A9RPF0|A9RPF0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_160250 PE=4 SV=1
          Length = 292

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 15/31 (48%), Positives = 23/31 (74%)
 Frame = +1

Query: 4   KLDVGEALAKHLSGCGFKSSVREEPVGT*RS 96
           K ++GE LAKH++ CGF++S+R  P+   RS
Sbjct: 155 KRELGETLAKHVTSCGFETSLRGLPLSAARS 185


>tr|A8NTF7|A8NTF7_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_06303 PE=3 SV=1
          Length = 733

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
 Frame = -2

Query: 372 SQTLKRLPNIFQRSKWEVDKKKWCQASNEERLYWSL-------RLQKLGSVN 238
           ++TL ++  + +  +W+  ++KW  A  EE   WSL        + KL SVN
Sbjct: 655 NETLIQIEKLAKSEEWKKAREKWAPAEGEESTVWSLWDPQFVTEISKLPSVN 706


>tr|A5IHJ7|A5IHJ7_LEGPC tRNA (guanine-N(1)-)-methyltransferase
           OS=Legionella pneumophila (strain Corby) GN=trmD PE=3
           SV=1
          Length = 250

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
 Frame = -3

Query: 359 KGCPTFSNVPNGKLTRKNGVK-LQTKKDST--GASGYKNLDQLTLESRLD---SLGDIIL 198
           + C T    P GK+ R+N +K + T+K S    A  Y+ +D+  +   +D   SLGD +L
Sbjct: 81  ENCKTIYLSPQGKVVRQNDLKQIATQKQSLLFVAGRYEGIDERIINHHIDEEWSLGDFVL 140

Query: 197 S 195
           S
Sbjct: 141 S 141