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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945677
Clone id YMU02A01NGRL0010_B11
Library
Length 566
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_B11. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GGGAAGGGAGTACAGCTCTCTGCACACACTCGTTCACCTCTTTTGCTGATTCCTCCCTCA
CGCAGAGAGTGCTTGGAAGGAACCATGGCAGCCGTGTCAGCCACCGTTACACCGGCCCTC
GTTCCGAACACCTGCGTGTCGAAGTCTCTCAGCTCCTCCAGCGCTAGGCCCGCTGCAGGT
CTGCCGGCCCTGAGGAAGATGAATGTTTCTTGCTCTTTGAAGGAGGAACATGAGTCAAGG
AAGGTTGAGCCGGCGGCTGCAGGTGCACTTGCAGCCTCCATCATGGCTGTTGCCCATCCT
GCGCTTGCCCTTGTGGATGATCGCCTTAGCACCGAGGGTACTGGACTTTCTCTTGGTGTG
AGCAACCCCCTAATTGTCTGGATTCTTCTCGGCGTCGCAACACTAATCTGGGCTCTCTTC
TTCGTATATGCATCTTCACTGAAGGAAGATGATGACTCTGGGCTCGCGTTGTAAGAGCTG
TGAATCGAGCTTCCGTATTGTATATTCAATTCTGATCAATGTCAAAAGTTGTCTTAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q41387
Definition sp|Q41387|PSBW_SPIOL Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea
Align length 59
Score (bit) 86.3
E-value 9.0e-17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945677|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_B11, 5'
         (535 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q41387|PSBW_SPIOL Photosystem II reaction center W protein, c...    86   9e-17
sp|Q39194|PSBW_ARATH Photosystem II reaction center W protein, c...    84   3e-16
sp|Q5ZBY9|PSBW_ORYSJ Photosystem II reaction center W protein, c...    81   3e-15
sp|Q9SPI9|PSBW_CHLRE Photosystem II reaction center W protein, c...    62   2e-09
sp|P55967|PSBW_WHEAT Photosystem II reaction center W protein (F...    37   0.079
sp|O60069|SWF1_SCHPO Palmitoyltransferase swf1 OS=Schizosaccharo...    31   3.3  
sp|Q5T749|KPRP_HUMAN Keratinocyte proline-rich protein OS=Homo s...    31   4.3  

>sp|Q41387|PSBW_SPIOL Photosystem II reaction center W protein,
           chloroplastic OS=Spinacia oleracea GN=psbW PE=1 SV=1
          Length = 137

 Score = 86.3 bits (212), Expect = 9e-17
 Identities = 40/59 (67%), Positives = 51/59 (86%)
 Frame = +1

Query: 295 HPALALVDDRLSTEGTGLSLGVSNPLIVWILLGVATLIWALFFVYASSLKEDDDSGLAL 471
           +PA+ALVD+R+STEGTGL  G+SN L+ WIL GV  LIWAL+FVYAS L+ED++SGL+L
Sbjct: 79  NPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFVYASGLEEDEESGLSL 137


>sp|Q39194|PSBW_ARATH Photosystem II reaction center W protein,
           chloroplastic OS=Arabidopsis thaliana GN=PSBW PE=1 SV=2
          Length = 133

 Score = 84.3 bits (207), Expect = 3e-16
 Identities = 39/59 (66%), Positives = 49/59 (83%)
 Frame = +1

Query: 295 HPALALVDDRLSTEGTGLSLGVSNPLIVWILLGVATLIWALFFVYASSLKEDDDSGLAL 471
           +PA+ALVD+R+STEGTGL  G+SN L+ WIL GV  LIW  FFVY SSL+ED++SGL+L
Sbjct: 75  NPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFFFVYTSSLEEDEESGLSL 133


>sp|Q5ZBY9|PSBW_ORYSJ Photosystem II reaction center W protein,
           chloroplastic OS=Oryza sativa subsp. japonica GN=PSBW
           PE=2 SV=1
          Length = 124

 Score = 81.3 bits (199), Expect = 3e-15
 Identities = 37/55 (67%), Positives = 48/55 (87%)
 Frame = +1

Query: 298 PALALVDDRLSTEGTGLSLGVSNPLIVWILLGVATLIWALFFVYASSLKEDDDSG 462
           PA+ALVD+R+STEGTGLSLG+SN L+ WILLGV  LIW+L+ +Y S L+ED++SG
Sbjct: 66  PAMALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTIYTSDLEEDEESG 120


>sp|Q9SPI9|PSBW_CHLRE Photosystem II reaction center W protein,
           chloroplastic OS=Chlamydomonas reinhardtii GN=psbW PE=1
           SV=1
          Length = 115

 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 29/61 (47%), Positives = 42/61 (68%), Gaps = 2/61 (3%)
 Frame = +1

Query: 295 HPALALVDDRLSTEGTGLSLGVSNPLIVWILLGVATLIWALFFVYASSLK--EDDDSGLA 468
           HPA ALVD+R++ +GTG   GV++P++ W+LLGV   +WA++F+    L   ED D GL 
Sbjct: 55  HPAFALVDERMNGDGTGRPFGVNDPVLGWVLLGVFGTMWAIWFIGQKDLGDFEDADDGLK 114

Query: 469 L 471
           L
Sbjct: 115 L 115


>sp|P55967|PSBW_WHEAT Photosystem II reaction center W protein
           (Fragment) OS=Triticum aestivum GN=psbW PE=1 SV=1
          Length = 20

 Score = 36.6 bits (83), Expect = 0.079
 Identities = 16/19 (84%), Positives = 19/19 (100%)
 Frame = +1

Query: 310 LVDDRLSTEGTGLSLGVSN 366
           LVD+R+STEGTGLSLG+SN
Sbjct: 1   LVDERMSTEGTGLSLGLSN 19


>sp|O60069|SWF1_SCHPO Palmitoyltransferase swf1
           OS=Schizosaccharomyces pombe GN=swf1 PE=2 SV=1
          Length = 356

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = +1

Query: 316 DDRLSTEGTGLS---LGVSNPLIVWILLGVATLIWALFFVYASSLKE 447
           D R S     LS   L  +NPL+V++ L + T+  A FF+Y SSL +
Sbjct: 58  DGRCSAAMRSLSNYVLYKNNPLVVFLYLALITIGIASFFIYGSSLTQ 104


>sp|Q5T749|KPRP_HUMAN Keratinocyte proline-rich protein OS=Homo
           sapiens GN=KPRP PE=1 SV=1
          Length = 579

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +2

Query: 77  KEPWQPCQPPLHRPSFRTPACRSLSAPPALGPLQVCRP 190
           + P Q C PP  RP  R   C SL   P   P Q+  P
Sbjct: 393 ESPLQRCPPPAPRPRLRPEPCISLEPRPRPLPRQLSEP 430
tr_hit_id A9PJA9
Definition tr|A9PJA9|A9PJA9_POPJC Putative uncharacterized protein OS=Populus jackii
Align length 58
Score (bit) 89.7
E-value 8.0e-17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945677|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_B11, 5'
         (535 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9PJA9|A9PJA9_POPJC Putative uncharacterized protein OS=Popul...    90   8e-17
tr|A9SEQ6|A9SEQ6_PHYPA Predicted protein (Fragment) OS=Physcomit...    89   2e-16
tr|A9SEQ5|A9SEQ5_PHYPA Predicted protein OS=Physcomitrella paten...    89   2e-16
tr|A9PEP9|A9PEP9_POPTR Putative uncharacterized protein OS=Popul...    88   3e-16
tr|B6TMB3|B6TMB3_MAIZE Photosystem II reaction center W protein ...    87   7e-16
tr|Q9AXN9|Q9AXN9_PHYPA PSII subunit PsbW (Fragment) OS=Physcomit...    85   3e-15
tr|A9T8Y1|A9T8Y1_PHYPA Predicted protein (Fragment) OS=Physcomit...    85   3e-15
tr|A9NL01|A9NL01_PICSI Putative uncharacterized protein OS=Picea...    85   3e-15
tr|B7FHC2|B7FHC2_MEDTR Putative uncharacterized protein OS=Medic...    84   4e-15
tr|A9NLC2|A9NLC2_PICSI Putative uncharacterized protein OS=Picea...    84   4e-15
tr|A7QVP6|A7QVP6_VITVI Chromosome chr14 scaffold_190, whole geno...    84   4e-15
tr|A5C3A9|A5C3A9_VITVI Putative uncharacterized protein OS=Vitis...    84   4e-15
tr|A7PUM2|A7PUM2_VITVI Chromosome chr7 scaffold_31, whole genome...    84   5e-15
tr|A1YMY4|A1YMY4_BRACM Component of 6.1 kDa polypeptide of photo...    84   5e-15
tr|Q41908|Q41908_ARATH Photosystem II 7kD protein OS=Arabidopsis...    83   8e-15
tr|Q8W536|Q8W536_9FABA Photosystem II reaction center (Fragment)...    81   3e-14
tr|B7E500|B7E500_ORYSJ cDNA clone:001-011-D03, full insert seque...    81   3e-14
tr|B6TM37|B6TM37_MAIZE Photosystem II reaction center W protein ...    81   3e-14
tr|B6T2W4|B6T2W4_MAIZE Photosystem II reaction center W protein ...    81   3e-14
tr|B6SMK2|B6SMK2_MAIZE Photosystem II reaction center W protein ...    81   3e-14
tr|B4FUI4|B4FUI4_MAIZE Photosystem II reaction center W protein ...    81   3e-14
tr|A2WVK4|A2WVK4_ORYSI Putative uncharacterized protein OS=Oryza...    81   3e-14
tr|A3B5P7|A3B5P7_ORYSJ Putative uncharacterized protein OS=Oryza...    79   1e-13
tr|Q9AXP0|Q9AXP0_PHYPA PSII subunit PsbW (Fragment) OS=Physcomit...    69   2e-10
tr|Q9AXN8|Q9AXN8_PHYPA PSII subunit PsbW (Fragment) OS=Physcomit...    67   6e-10
tr|A8JFQ7|A8JFQ7_CHLRE Photosystem II reaction center W protein ...    62   2e-08
tr|A2SY30|A2SY30_MESVI Photosystem II reaction center W protein ...    56   1e-06
tr|B5A4J5|B5A4J5_GYMST Photosystem II reaction center W protein ...    54   4e-06
tr|Q944K9|Q944K9_ARATH At2g30570/T6B20.8 OS=Arabidopsis thaliana...    53   9e-06
tr|Q7XYI4|Q7XYI4_BIGNA Photosystem II protein PsbW OS=Bigelowiel...    52   3e-05

>tr|A9PJA9|A9PJA9_POPJC Putative uncharacterized protein OS=Populus
           jackii PE=2 SV=1
          Length = 133

 Score = 89.7 bits (221), Expect = 8e-17
 Identities = 42/58 (72%), Positives = 50/58 (86%)
 Frame = +1

Query: 298 PALALVDDRLSTEGTGLSLGVSNPLIVWILLGVATLIWALFFVYASSLKEDDDSGLAL 471
           PALALVD+RLSTEGTGL  G+SN L+VWILLGV   IW+L+FVY SSL ED+DSG++L
Sbjct: 76  PALALVDERLSTEGTGLPFGLSNNLLVWILLGVFAFIWSLYFVYTSSLDEDEDSGMSL 133


>tr|A9SEQ6|A9SEQ6_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_128580 PE=4 SV=1
          Length = 142

 Score = 88.6 bits (218), Expect = 2e-16
 Identities = 41/60 (68%), Positives = 50/60 (83%), Gaps = 1/60 (1%)
 Frame = +1

Query: 295 HPALALVDDRLSTEGTGLSLGVSNPLIVWILLGVATLIWALFFVYASSLKE-DDDSGLAL 471
           HP  ALVD+RLSTEGTGL LGVSNP + WIL+GV  L+WA++F Y+S+L E DDDSGL+L
Sbjct: 83  HPVFALVDERLSTEGTGLGLGVSNPKLTWILVGVTALVWAVYFTYSSTLPEGDDDSGLSL 142


>tr|A9SEQ5|A9SEQ5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_232256 PE=4 SV=1
          Length = 64

 Score = 88.6 bits (218), Expect = 2e-16
 Identities = 41/60 (68%), Positives = 50/60 (83%), Gaps = 1/60 (1%)
 Frame = +1

Query: 295 HPALALVDDRLSTEGTGLSLGVSNPLIVWILLGVATLIWALFFVYASSLKE-DDDSGLAL 471
           HP  ALVD+RLSTEGTGL LGVSNP + WIL+GV  L+WA++F Y+S+L E DDDSGL+L
Sbjct: 5   HPVFALVDERLSTEGTGLGLGVSNPKLTWILVGVTALVWAVYFTYSSTLPEGDDDSGLSL 64


>tr|A9PEP9|A9PEP9_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 134

 Score = 87.8 bits (216), Expect = 3e-16
 Identities = 40/58 (68%), Positives = 51/58 (87%)
 Frame = +1

Query: 298 PALALVDDRLSTEGTGLSLGVSNPLIVWILLGVATLIWALFFVYASSLKEDDDSGLAL 471
           PALALVD+R+STEGTGL  G+SN L+VWILLGV  LIWAL+F Y ++L+ED++SGL+L
Sbjct: 77  PALALVDERMSTEGTGLPFGLSNNLLVWILLGVFALIWALYFTYTATLEEDEESGLSL 134


>tr|B6TMB3|B6TMB3_MAIZE Photosystem II reaction center W protein
           OS=Zea mays PE=2 SV=1
          Length = 127

 Score = 86.7 bits (213), Expect = 7e-16
 Identities = 42/58 (72%), Positives = 50/58 (86%)
 Frame = +1

Query: 298 PALALVDDRLSTEGTGLSLGVSNPLIVWILLGVATLIWALFFVYASSLKEDDDSGLAL 471
           P LALVD+R+STEGTGLSLG+SN L+ WILLGV  LIW+L+ VY S+L EDDDSGL+L
Sbjct: 70  PXLALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTVYTSTLDEDDDSGLSL 127


>tr|Q9AXN9|Q9AXN9_PHYPA PSII subunit PsbW (Fragment)
           OS=Physcomitrella patens PE=2 SV=1
          Length = 69

 Score = 84.7 bits (208), Expect = 3e-15
 Identities = 41/60 (68%), Positives = 48/60 (80%), Gaps = 1/60 (1%)
 Frame = +1

Query: 295 HPALALVDDRLSTEGTGLSLGVSNPLIVWILLGVATLIWALFFVYASSLKE-DDDSGLAL 471
           HP  ALVD+RLSTEGTGL LG+SN  + WIL+GV  LIWAL+F Y+S+L E DDDSGL L
Sbjct: 10  HPVFALVDERLSTEGTGLGLGISNTKLTWILVGVTALIWALYFSYSSTLPEGDDDSGLDL 69


>tr|A9T8Y1|A9T8Y1_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_9752 PE=4 SV=1
          Length = 67

 Score = 84.7 bits (208), Expect = 3e-15
 Identities = 41/60 (68%), Positives = 48/60 (80%), Gaps = 1/60 (1%)
 Frame = +1

Query: 295 HPALALVDDRLSTEGTGLSLGVSNPLIVWILLGVATLIWALFFVYASSLKE-DDDSGLAL 471
           HP  ALVD+RLSTEGTGL LG+SN  + WIL+GV  LIWAL+F Y+S+L E DDDSGL L
Sbjct: 8   HPVFALVDERLSTEGTGLGLGISNTKLTWILVGVTALIWALYFSYSSTLPEGDDDSGLDL 67


>tr|A9NL01|A9NL01_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 146

 Score = 84.7 bits (208), Expect = 3e-15
 Identities = 40/57 (70%), Positives = 49/57 (85%)
 Frame = +1

Query: 301 ALALVDDRLSTEGTGLSLGVSNPLIVWILLGVATLIWALFFVYASSLKEDDDSGLAL 471
           A ALVD+RLSTEGTGL LG+SNPL+ WIL+GV TLIW L+F   S++KED+DSGL+L
Sbjct: 90  AFALVDERLSTEGTGLGLGLSNPLLGWILVGVFTLIWILYFTTYSNVKEDEDSGLSL 146


>tr|B7FHC2|B7FHC2_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 136

 Score = 84.3 bits (207), Expect = 4e-15
 Identities = 39/57 (68%), Positives = 49/57 (85%)
 Frame = +1

Query: 301 ALALVDDRLSTEGTGLSLGVSNPLIVWILLGVATLIWALFFVYASSLKEDDDSGLAL 471
           A+ALVD+R+STEGTGL  G+SN L+ W+L GV  LIWAL+F+YASSL ED+DSGL+L
Sbjct: 80  AMALVDERMSTEGTGLPFGLSNNLLGWLLFGVFGLIWALYFIYASSLDEDEDSGLSL 136


>tr|A9NLC2|A9NLC2_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 146

 Score = 84.3 bits (207), Expect = 4e-15
 Identities = 40/57 (70%), Positives = 48/57 (84%)
 Frame = +1

Query: 301 ALALVDDRLSTEGTGLSLGVSNPLIVWILLGVATLIWALFFVYASSLKEDDDSGLAL 471
           A ALVD+RLSTEGTGL LG+SNPL+ WIL+GV TLIW L+F   S +KED+DSGL+L
Sbjct: 90  AFALVDERLSTEGTGLGLGLSNPLLGWILVGVFTLIWILYFTTYSGVKEDEDSGLSL 146