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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945678
Clone id YMU02A01NGRL0010_B12
Library
Length 499
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_B12. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TATCGTAGCGATACTAGTTTAGTGGTAAAAGTGTGACTCGTCTCGCAGTGATTTTGATAG
TTGAGGGATCGTATCTCGGCTAAATTAACTGAAAGAAAAAAAACTTTATCTTCGCAGAAA
ATATGTGTTTTCTTATTATTTCTCCAAAATTAGAGGTAGATTAATCGATCTCGTCACTCA
TTCATTTCAAGAACTAGGGAAGATAGTGACGAAGCAGAATTGTTTTGGTACCCCAAGAAA
TACTTGGTTTAATTTCTACTTCCGGGGAGATAAATAAAGAAAAAAAATCTATGGGTAGAC
GTCTAAGATAGCTGACTCATCGTCACTAAACCTCAGAGAATAAATCTGGGAAAGAAAGTT
GGAATAAATAAATACGGGTTTGTCAAGATTATTGAACATCTATTTGGTTGAACGGGATCC
CTCGTTTCAACAACTCGGTGAGATATATTTCCCTAAGGGTTTTTTCCTGAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id A1VDD3
Definition sp|A1VDD3|DAPAT_DESVV LL-diaminopimelate aminotransferase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4)
Align length 38
Score (bit) 30.0
E-value 5.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945678|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_B12, 5'
         (469 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A1VDD3|DAPAT_DESVV LL-diaminopimelate aminotransferase OS=Des...    30   5.3  
sp|Q72BI1|DAPAT_DESVH LL-diaminopimelate aminotransferase OS=Des...    30   5.3  

>sp|A1VDD3|DAPAT_DESVV LL-diaminopimelate aminotransferase
           OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4)
           GN=dapL PE=3 SV=1
          Length = 388

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = +2

Query: 167 DLVTHSFQELGKIVTKQNCFGTPRNTWFNFYFRGDK*R 280
           D VT   QE G +VT  N FGTP   +F      D  R
Sbjct: 340 DFVTRVLQETGVVVTPGNGFGTPGEGFFRISLTVDNAR 377


>sp|Q72BI1|DAPAT_DESVH LL-diaminopimelate aminotransferase
           OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC
           29579 / NCIMB 8303) GN=dapL PE=3 SV=1
          Length = 388

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = +2

Query: 167 DLVTHSFQELGKIVTKQNCFGTPRNTWFNFYFRGDK*R 280
           D VT   QE G +VT  N FGTP   +F      D  R
Sbjct: 340 DFVTRVLQETGVVVTPGNGFGTPGEGFFRISLTVDNAR 377
tr_hit_id B3PDM4
Definition tr|B3PDM4|B3PDM4_CELJU PQQ enzyme repeat domain protein OS=Cellvibrio japonicus (strain Ueda107)
Align length 42
Score (bit) 33.1
E-value 7.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945678|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_B12, 5'
         (469 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3PDM4|B3PDM4_CELJU PQQ enzyme repeat domain protein OS=Cellv...    33   7.1  
tr|Q6VEE3|Q6VEE3_EMIHU Ribosomal protein L16 OS=Emiliania huxley...    33   9.3  

>tr|B3PDM4|B3PDM4_CELJU PQQ enzyme repeat domain protein
           OS=Cellvibrio japonicus (strain Ueda107) GN=CJA_1484
           PE=4 SV=1
          Length = 409

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +2

Query: 344 IWERKLE*INTGLSRLLNIYLVERDPSFQQLGEIYFPKGFFL 469
           +W R++   +TGL   +  Y V  DP++Q LG I   KG  L
Sbjct: 95  LWSRRINQQHTGLWGWIKSYFVAEDPNYQILGGIGAEKGLLL 136


>tr|Q6VEE3|Q6VEE3_EMIHU Ribosomal protein L16 OS=Emiliania huxleyi
           GN=rpl16 PE=3 SV=1
          Length = 138

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +1

Query: 277 KKKNLWVDV*DS*LIVTKPQRINLGKKVGINKYG--FVKIIEHLF 405
           K+  +W+++  S +I  KPQ + +GK  G  KY   F+K  E LF
Sbjct: 61  KQAKIWINIFPSKMITKKPQEVRMGKGKGYVKYWAYFIKKNEILF 105