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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945679
Clone id YMU02A01NGRL0010_B13
Library
Length 520
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_B13. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCTCGTATGGCTCTGAAGGAGGGTACGGTTCCTACGCAGATGGTTATGGAGTGTCTCAGC
TAAATTCAGGTCCTGTTTCTGGTGCTGGTACTGGGGCGGATGCTACTGGTCCTGGTGTGC
CTTATGGTGCTGGAGCTGGACCTGCCTGGGGAGCCTATGCACGGCGTTGAAAGGGCTCAG
AGGTTGATTGAAAGGCAGATTAGCTCTGACGGTGAAAGTGATTGTGGGAGACCTTGTATC
GACCATCCCGTGGAAGGCTCATAGCCAAGCGTGAAGGGACGAGAACAGGTGGCCTGCCAT
ACATAGCGCTACATGTGATACCAATCATGGTGTAGACAGTTGTAGGAATGGGTTCTATTA
AGCACAGCAAACTTTTTGTATTTTTGCTTTGCAAGGAAACTGCGTTGTGACGGTTAATGC
TTCTTCATGTCACTTTTCTGCTCTTCGGGGCCTGCTGCAAGCTATCTGAACTTTAAAGCA
TGTGCTACTTGGCCCTGTCTGACTTTCATTACTTTGAGGT
■■Homology search results ■■ -
sp_hit_id P28769
Definition sp|P28769|TCPA_ARATH T-complex protein 1 subunit alpha OS=Arabidopsis thaliana
Align length 29
Score (bit) 32.7
E-value 1.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945679|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_B13, 5'
         (520 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P28769|TCPA_ARATH T-complex protein 1 subunit alpha OS=Arabid...    33   1.0  
sp|Q9JI18|LRP1B_MOUSE Low-density lipoprotein receptor-related p...    31   4.0  

>sp|P28769|TCPA_ARATH T-complex protein 1 subunit alpha
           OS=Arabidopsis thaliana GN=CCT1 PE=2 SV=1
          Length = 545

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -3

Query: 266 GYEPSTGWSIQGLPQSLSPSELICLSINL 180
           GY  +TG + QG+P  +SP+++ CL  NL
Sbjct: 216 GYALNTGRAAQGMPLRVSPAKIACLDFNL 244


>sp|Q9JI18|LRP1B_MOUSE Low-density lipoprotein receptor-related
            protein 1B OS=Mus musculus GN=Lrp1b PE=2 SV=1
          Length = 4599

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
 Frame = +2

Query: 290  WPAIHSATCDTNHGVDSCRNGFY*AQQTF----CIFAL---QGNCVVTVNASSCH 433
            WP+     C+ NH  + C+NG      T     CI AL     NC   V   SCH
Sbjct: 4240 WPSYSGGRCEVNHCSNYCQNGGTCIPSTLGRPTCICALGFTGPNCGKAVCEDSCH 4294
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945679|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_B13, 5'
         (520 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******