DK945679
Clone id YMU02A01NGRL0010_B13
Library
Length 520
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_B13. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
GCTCGTATGGCTCTGAAGGAGGGTACGGTTCCTACGCAGATGGTTATGGAGTGTCTCAGC
TAAATTCAGGTCCTGTTTCTGGTGCTGGTACTGGGGCGGATGCTACTGGTCCTGGTGTGC
CTTATGGTGCTGGAGCTGGACCTGCCTGGGGAGCCTATGCACGGCGTTGAAAGGGCTCAG
AGGTTGATTGAAAGGCAGATTAGCTCTGACGGTGAAAGTGATTGTGGGAGACCTTGTATC
GACCATCCCGTGGAAGGCTCATAGCCAAGCGTGAAGGGACGAGAACAGGTGGCCTGCCAT
ACATAGCGCTACATGTGATACCAATCATGGTGTAGACAGTTGTAGGAATGGGTTCTATTA
AGCACAGCAAACTTTTTGTATTTTTGCTTTGCAAGGAAACTGCGTTGTGACGGTTAATGC
TTCTTCATGTCACTTTTCTGCTCTTCGGGGCCTGCTGCAAGCTATCTGAACTTTAAAGCA
TGTGCTACTTGGCCCTGTCTGACTTTCATTACTTTGAGGT
■■Homology search results ■■ -
sp_hit_id P28769
Definition sp|P28769|TCPA_ARATH T-complex protein 1 subunit alpha OS=Arabidopsis thaliana
Align length 29
Score (bit) 32.7
E-value 1.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945679|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_B13, 5'
(520 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P28769|TCPA_ARATH T-complex protein 1 subunit alpha OS=Arabid... 33 1.0
sp|Q9JI18|LRP1B_MOUSE Low-density lipoprotein receptor-related p... 31 4.0

>sp|P28769|TCPA_ARATH T-complex protein 1 subunit alpha
OS=Arabidopsis thaliana GN=CCT1 PE=2 SV=1
Length = 545

Score = 32.7 bits (73), Expect = 1.0
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3

Query: 266 GYEPSTGWSIQGLPQSLSPSELICLSINL 180
GY +TG + QG+P +SP+++ CL NL
Sbjct: 216 GYALNTGRAAQGMPLRVSPAKIACLDFNL 244


>sp|Q9JI18|LRP1B_MOUSE Low-density lipoprotein receptor-related
protein 1B OS=Mus musculus GN=Lrp1b PE=2 SV=1
Length = 4599

Score = 30.8 bits (68), Expect = 4.0
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Frame = +2

Query: 290 WPAIHSATCDTNHGVDSCRNGFY*AQQTF----CIFAL---QGNCVVTVNASSCH 433
WP+ C+ NH + C+NG T CI AL NC V SCH
Sbjct: 4240 WPSYSGGRCEVNHCSNYCQNGGTCIPSTLGRPTCICALGFTGPNCGKAVCEDSCH 4294


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945679|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_B13, 5'
(520 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******