DK945683 |
Clone id |
YMU02A01NGRL0010_B18 |
Library |
YMU02 |
Length |
692 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_B18. 5' end sequence. |
Accession |
DK945683 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
- |
Sequence |
GGAGCACAGTTTCTCTCGGGAAAGTACCCTCACGTGAAGCAGTTCATAACCCTAGCTTCC TCTCTCCAGAAGCTCTCCCTTTCTACCTCGCCTTTTCGCTTACTTGCTGCCATGGCTGCT CAAGCCCTCTGCGCATCCTCGTCTGTGGCCACCGTCCAGCTGAATGGCAGCCTTTCTTCT AAGGTCAGCGTTGCCCGCCCCAGTGCCCGCGTTGGATTGGCCTTCGGCTTGAAGAAGGGG ATGATGGGTAGAGTGCAGGCCTTCAAGGTCACCTTCAAGACGCCCGATGGCGAGAAGGTA ATTGACGTTCCAGGGGACACCTACCTTTTGGATGCTGGTGAGGAAGCTGGGCTTGACCTG CCCTACTCCTGCCGTGCGGGCGCTTGCTCTTCCTGCGCTGGCAAGCTCGTCTCTGGGAGC GTAGACCAGAGCGACCAGTCCTTCCTCGACGATGATCAGGTGGAGGCTGGTTTCGTCCTT ACATGTAACGCCTACCCCACATCTGACCTTGTCATCACGACTCACGTAGAGGAAGAGCTT ACTGGCTAGGTCTGATTTCAGCAACCCTGCTGGTTTGGCTATTACATCTCCTGCGGACTT TGTTTCCTTCTCCTGACATTGTACACGCCTTTTGTTCCACTTGGTAATCAAGAGCATTAA AGTTTTTTGTTTAAAGAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P00228 |
Definition |
sp|P00228|FER_WHEAT Ferredoxin, chloroplastic OS=Triticum aestivum |
Align length |
128 |
Score (bit) |
121.0 |
E-value |
3.0e-27 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK945683|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0010_B18, 5' (672 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P00228|FER_WHEAT Ferredoxin, chloroplastic OS=Triticum aestiv... 121 3e-27 sp|P00250|FER_APHSA Ferredoxin-1 OS=Aphanothece sacrum PE=1 SV=2 120 5e-27 sp|P16972|FER2_ARATH Ferredoxin-2, chloroplastic OS=Arabidopsis ... 120 5e-27 sp|P07839|FER_CHLRE Ferredoxin, chloroplastic OS=Chlamydomonas r... 120 7e-27 sp|P09911|FER1_PEA Ferredoxin-1, chloroplastic OS=Pisum sativum ... 120 9e-27 sp|P27787|FER1_MAIZE Ferredoxin-1, chloroplastic OS=Zea mays GN=... 120 9e-27 sp|O04683|FER1_MESCR Ferredoxin-1, chloroplastic OS=Mesembryanth... 119 1e-26 sp|P00238|FER_SCEQU Ferredoxin OS=Scenedesmus quadricauda PE=1 SV=1 119 1e-26 sp|P00231|FER2_PHYAM Ferredoxin-2 OS=Phytolacca americana PE=1 SV=1 119 1e-26 sp|P00233|FER_GLEJA Ferredoxin OS=Gleichenia japonica PE=1 SV=1 118 2e-26 sp|P00232|FER2_PHYES Ferredoxin-2 OS=Phytolacca esculenta PE=1 SV=1 118 3e-26 sp|P04669|FER_SILPR Ferredoxin, chloroplastic OS=Silene pratensi... 116 9e-26 sp|O04090|FER1_ARATH Ferredoxin-1, chloroplastic OS=Arabidopsis ... 116 9e-26 sp|P00225|FER_LEUGL Ferredoxin OS=Leucaena glauca PE=1 SV=1 116 1e-25 sp|P56408|FER_CHLFU Ferredoxin OS=Chlorella fusca PE=1 SV=1 116 1e-25 sp|P00230|FER1_PHYES Ferredoxin-1 OS=Phytolacca esculenta PE=1 SV=1 115 2e-25 sp|P00221|FER1_SPIOL Ferredoxin-1, chloroplastic OS=Spinacia ole... 115 3e-25 sp|Q0J8M2|FER1_ORYSJ Ferredoxin-1, chloroplastic OS=Oryza sativa... 115 3e-25 sp|A2YQD9|FER1_ORYSI Ferredoxin-1, chloroplastic OS=Oryza sativa... 115 3e-25 sp|P09735|FER_MARPO Ferredoxin OS=Marchantia polymorpha PE=1 SV=1 114 4e-25 sp|P83522|FER_HORVU Ferredoxin OS=Hordeum vulgare PE=1 SV=1 114 5e-25 sp|P00227|FER_BRANA Ferredoxin OS=Brassica napus PE=1 SV=1 114 5e-25 sp|P00243|FER_SYNY4 Ferredoxin OS=Synechocystis sp. (strain PCC ... 113 1e-24 sp|P27320|FER_SYNY3 Ferredoxin-1 OS=Synechocystis sp. (strain PC... 113 1e-24 sp|P00255|FER_SYNLI Ferredoxin OS=Synechococcus lividus PE=1 SV=2 112 1e-24 sp|P00229|FER1_PHYAM Ferredoxin-1 OS=Phytolacca americana PE=1 SV=1 112 2e-24 sp|P14938|FER3_RAPSA Ferredoxin, leaf L-A OS=Raphanus sativus PE... 112 2e-24 sp|P00244|FER1_APHFL Ferredoxin-1 OS=Aphanizomenon flos-aquae PE... 112 2e-24 sp|P00224|FER2_SPIOL Ferredoxin-2 OS=Spinacia oleracea PE=1 SV=1 111 3e-24 sp|P00248|FER_MASLA Ferredoxin OS=Mastigocladus laminosus GN=pet... 111 4e-24
>sp|P00228|FER_WHEAT Ferredoxin, chloroplastic OS=Triticum aestivum GN=PETF PE=1 SV=2 Length = 143
Score = 121 bits (304), Expect = 3e-27 Identities = 68/128 (53%), Positives = 82/128 (64%), Gaps = 9/128 (7%) Frame = +1
Query: 187 SVARPSARVGLA-----FGLKKGMMG---RVQA-FKVTFKTPDGEKVIDVPGDTYLLDAG 339 +VA P+ RV LA K + G R QA +KV TP+GE ++VP D Y+LD Sbjct: 15 AVAPPAPRVALAPAALSLAAAKQVRGARLRAQATYKVKLVTPEGEVELEVPDDVYILDQA 74
Query: 340 EEAGLDLPYSCRAGACSSCAGKLVSGXXXXXXXXXXXXXXVEAGFVLTCNAYPTSDLVIT 519 EE G+DLPYSCRAG+CSSCAGKLVSG +EAG+VLTC+AYP SD+VI Sbjct: 75 EEEGIDLPYSCRAGSCSSCAGKLVSGEIDQSDQSFLDDDQMEAGWVLTCHAYPKSDIVIE 134
Query: 520 THVEEELT 543 TH EEELT Sbjct: 135 THKEEELT 142
>sp|P00250|FER_APHSA Ferredoxin-1 OS=Aphanothece sacrum PE=1 SV=2 Length = 97
Score = 120 bits (302), Expect = 5e-27 Identities = 57/94 (60%), Positives = 66/94 (70%) Frame = +1
Query: 259 AFKVTFKTPDGEKVIDVPGDTYLLDAGEEAGLDLPYSCRAGACSSCAGKLVSGXXXXXXX 438 ++KVT KTPDG+ VI VP D Y+LD EE GLDLPYSCRAGACS+CAGKLVSG Sbjct: 3 SYKVTLKTPDGDNVITVPDDEYILDVAEEEGLDLPYSCRAGACSTCAGKLVSGPAPDEDQ 62
Query: 439 XXXXXXXVEAGFVLTCNAYPTSDLVITTHVEEEL 540 ++AG++LTC AYPT D VI TH EE L Sbjct: 63 SFLDDDQIQAGYILTCVAYPTGDCVIETHKEEAL 96
>sp|P16972|FER2_ARATH Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana GN=FD2 PE=1 SV=1 Length = 148
Score = 120 bits (302), Expect = 5e-27 Identities = 64/119 (53%), Positives = 76/119 (63%), Gaps = 5/119 (4%) Frame = +1
Query: 199 PSARVGLAFGLKKGMM--GRVQA---FKVTFKTPDGEKVIDVPGDTYLLDAGEEAGLDLP 363 PSA FGLK G GRV A +KV F TP+GE ++ D Y+LDA EEAG+DLP Sbjct: 29 PSANTQSLFGLKSGTARGGRVTAMATYKVKFITPEGELEVECDDDVYVLDAAEEAGIDLP 88
Query: 364 YSCRAGACSSCAGKLVSGXXXXXXXXXXXXXXVEAGFVLTCNAYPTSDLVITTHVEEEL 540 YSCRAG+CSSCAGK+VSG + GFVLTC AYPTSD+ I TH EE++ Sbjct: 89 YSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEGFVLTCAAYPTSDVTIETHKEEDI 147
>sp|P07839|FER_CHLRE Ferredoxin, chloroplastic OS=Chlamydomonas reinhardtii GN=PETF PE=1 SV=2 Length = 126
Score = 120 bits (301), Expect = 7e-27 Identities = 62/116 (53%), Positives = 72/116 (62%) Frame = +1
Query: 193 ARPSARVGLAFGLKKGMMGRVQAFKVTFKTPDGEKVIDVPGDTYLLDAGEEAGLDLPYSC 372 A+P+ R G + A+KVT KTP G+K I+ P DTY+LDA EEAGLDLPYSC Sbjct: 15 AKPAVR-----GARPASRMSCMAYKVTLKTPSGDKTIECPADTYILDAAEEAGLDLPYSC 69
Query: 373 RAGACSSCAGKLVSGXXXXXXXXXXXXXXVEAGFVLTCNAYPTSDLVITTHVEEEL 540 RAGACSSCAGK+ +G + GFVLTC AYPTSD I TH EE L Sbjct: 70 RAGACSSCAGKVAAGTVDQSDQSFLDDAQMGNGFVLTCVAYPTSDCTIQTHQEEAL 125
>sp|P09911|FER1_PEA Ferredoxin-1, chloroplastic OS=Pisum sativum GN=PETF PE=1 SV=2 Length = 149
Score = 120 bits (300), Expect = 9e-27 Identities = 60/112 (53%), Positives = 73/112 (65%), Gaps = 1/112 (0%) Frame = +1
Query: 211 VGLAFGLKKGMMGRVQA-FKVTFKTPDGEKVIDVPGDTYLLDAGEEAGLDLPYSCRAGAC 387 +GL LK+G + A +KV TPDG + + P D Y+LD EE G+DLPYSCRAG+C Sbjct: 37 LGLKTSLKRGDLAVAMASYKVKLVTPDGTQEFECPSDVYILDHAEEVGIDLPYSCRAGSC 96
Query: 388 SSCAGKLVSGXXXXXXXXXXXXXXVEAGFVLTCNAYPTSDLVITTHVEEELT 543 SSCAGK+V G +EAGFVLTC AYPTSD+VI TH EE+LT Sbjct: 97 SSCAGKVVGGEVDQSDGSFLDDEQIEAGFVLTCVAYPTSDVVIETHKEEDLT 148
>sp|P27787|FER1_MAIZE Ferredoxin-1, chloroplastic OS=Zea mays GN=FDX1 PE=1 SV=1 Length = 150
Score = 120 bits (300), Expect = 9e-27 Identities = 63/123 (51%), Positives = 80/123 (65%), Gaps = 3/123 (2%) Frame = +1
Query: 187 SVARPSARVGLAFGLKKGMMGRVQA---FKVTFKTPDGEKVIDVPGDTYLLDAGEEAGLD 357 +VA P+A+VG+ G R++A + V TP+GE + VP D Y+LD EE G+D Sbjct: 28 AVALPAAKVGI-MGRSASSRRRLRAQATYNVKLITPEGEVELQVPDDVYILDQAEEDGID 86
Query: 358 LPYSCRAGACSSCAGKLVSGXXXXXXXXXXXXXXVEAGFVLTCNAYPTSDLVITTHVEEE 537 LPYSCRAG+CSSCAGK+VSG + G+VLTC+AYPTSD+VI TH EEE Sbjct: 87 LPYSCRAGSCSSCAGKVVSGSVDQSDQSYLDDGQIADGWVLTCHAYPTSDVVIETHKEEE 146
Query: 538 LTG 546 LTG Sbjct: 147 LTG 149
>sp|O04683|FER1_MESCR Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1 Length = 148
Score = 119 bits (299), Expect = 1e-26 Identities = 57/113 (50%), Positives = 74/113 (65%) Frame = +1
Query: 205 ARVGLAFGLKKGMMGRVQAFKVTFKTPDGEKVIDVPGDTYLLDAGEEAGLDLPYSCRAGA 384 A GL +G + + A+KVT TP+G++ ++ P D Y+LDA EEAG+DLPYSCRAG+ Sbjct: 35 ALFGLKSSASRGRVTAMAAYKVTLVTPEGKQELECPDDVYILDAAEEAGIDLPYSCRAGS 94
Query: 385 CSSCAGKLVSGXXXXXXXXXXXXXXVEAGFVLTCNAYPTSDLVITTHVEEELT 543 CSSCAGK+ SG ++ G+VLTC AYPT D+ I TH EEELT Sbjct: 95 CSSCAGKVTSGSVNQDDGSFLDDDQIKEGWVLTCVAYPTGDVTIETHKEEELT 147
>sp|P00238|FER_SCEQU Ferredoxin OS=Scenedesmus quadricauda PE=1 SV=1 Length = 96
Score = 119 bits (298), Expect = 1e-26 Identities = 56/93 (60%), Positives = 66/93 (70%) Frame = +1
Query: 262 FKVTFKTPDGEKVIDVPGDTYLLDAGEEAGLDLPYSCRAGACSSCAGKLVSGXXXXXXXX 441 +KVT KTP G++ I+ P DTY+LDA EEAGLDLPYSCRAGACSSCAGK+ +G Sbjct: 3 YKVTLKTPSGDQTIECPDDTYILDAAEEAGLDLPYSCRAGACSSCAGKVEAGTVDQSDQS 62
Query: 442 XXXXXXVEAGFVLTCNAYPTSDLVITTHVEEEL 540 ++ GFVLTC AYPTSD I TH EE+L Sbjct: 63 FLDDSQMDGGFVLTCVAYPTSDCTIATHKEEDL 95
>sp|P00231|FER2_PHYAM Ferredoxin-2 OS=Phytolacca americana PE=1 SV=1 Length = 98
Score = 119 bits (298), Expect = 1e-26 Identities = 57/95 (60%), Positives = 67/95 (70%) Frame = +1
Query: 259 AFKVTFKTPDGEKVIDVPGDTYLLDAGEEAGLDLPYSCRAGACSSCAGKLVSGXXXXXXX 438 ++KVTF TP G I P DTY+LDA EE+GLDLPYSCRAGACSSCAGK+ +G Sbjct: 3 SYKVTFVTPSGTNTITCPADTYVLDAAEESGLDLPYSCRAGACSSCAGKVTAGAVNQEDG 62
Query: 439 XXXXXXXVEAGFVLTCNAYPTSDLVITTHVEEELT 543 +EAG+VLTC AYPTSD+ I TH EE+LT Sbjct: 63 SFLEEEQMEAGWVLTCVAYPTSDVTIETHKEEDLT 97
>sp|P00233|FER_GLEJA Ferredoxin OS=Gleichenia japonica PE=1 SV=1 Length = 95
Score = 118 bits (296), Expect = 2e-26 Identities = 56/93 (60%), Positives = 64/93 (68%) Frame = +1
Query: 262 FKVTFKTPDGEKVIDVPGDTYLLDAGEEAGLDLPYSCRAGACSSCAGKLVSGXXXXXXXX 441 FKV F TPDGE+ I+VP D ++LDAGEEAGLDLPYSCRAGACSSC GKL+ G Sbjct: 3 FKVKFLTPDGERTIEVPDDKFILDAGEEAGLDLPYSCRAGACSSCTGKLLDGRVDQSEQS 62
Query: 442 XXXXXXVEAGFVLTCNAYPTSDLVITTHVEEEL 540 + GFVLTC AYP D+ I TH EE+L Sbjct: 63 FLDDDQMAEGFVLTCVAYPAGDITIETHAEEKL 95
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A1YQX2 |
Definition |
tr|A1YQX2|A1YQX2_VOLCA Ferredoxin OS=Volvox carteri f. nagariensis |
Align length |
130 |
Score (bit) |
130.0 |
E-value |
8.0e-29 |
Report |
|