DK945689 |
Clone id |
YMU02A01NGRL0010_C01 |
Library |
YMU02 |
Length |
619 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_C01. 5' end sequence. |
Accession |
DK945689 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL319Contig1 |
Sequence |
ACGGATATGGCGACCTCTCCTCTGTCCGTGGAGGTGCACAATCCCCATGGAAAATTGCGC GTCATCAGCACCAAGCCCATGCCTGGCTCCCGCTGGATTAAGCTTCTTGTCGATGCCGGG TGTCGAGTTGAGATTTGCACGGAAAAGAAGACTATTCTCAGTGTCGATGATATCAAACGT CTGATTGGAAGGAAGTGTGATGGCGTGATTGGCCAGCTCACTGAAGACTGGGGAGATGGC CTCTTTTCTTCCCTCAAAGCAGCCGGAGGCCATGCTTACAGCAACATGGCAGTTGGATAC AACAATGTTAACGTTGAGGCGGCCACACGTAACGGTGTAGCTGTAGGCAATACACCAGGG GTTCTTACCGAAACAACTGCCGAGCTTGCTGCGGCATTAACCTTAGCAGCTGCTCGACGG GTTGTTGAAGCTGATTACTTCATGCGGGCAGGAAAATATGATGGCTGGCTTCCAACTTTG TTCATCGGAAATTTGCTTAAAGGTCAGACAGTAGGCATTATTGGAGCGGGAAGGATTGGT TCTGCCTACGCAAGGATGATGGTTGAAGGCTTTAAAATGAACGTTGTTTACTACGATCTC TATCAAGCAAGCAGACTTG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P13443 |
Definition |
sp|P13443|DHGY_CUCSA Glycerate dehydrogenase OS=Cucumis sativus |
Align length |
200 |
Score (bit) |
284.0 |
E-value |
3.0e-76 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK945689|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0010_C01, 5' (619 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P13443|DHGY_CUCSA Glycerate dehydrogenase OS=Cucumis sativus ... 284 3e-76 sp|Q9C4M5|GYAR_THELI Glyoxylate reductase OS=Thermococcus litora... 78 3e-14 sp|Q8U3Y2|GYAR_PYRFU Glyoxylate reductase OS=Pyrococcus furiosus... 77 9e-14 sp|B1L765|GYAR_KORCO Glyoxylate reductase OS=Korarchaeum cryptof... 77 9e-14 sp|Q5JEZ2|GYAR_PYRKO Glyoxylate reductase OS=Pyrococcus kodakara... 76 2e-13 sp|O58320|GYAR_PYRHO Glyoxylate reductase OS=Pyrococcus horikosh... 76 2e-13 sp|Q9UYR1|GYAR_PYRAB Glyoxylate reductase OS=Pyrococcus abyssi G... 73 1e-12 sp|Q9YAW4|GYAR_AERPE Glyoxylate reductase OS=Aeropyrum pernix GN... 70 7e-12 sp|Q49ZM5|Y606_STAS1 Putative 2-hydroxyacid dehydrogenase SSP060... 66 2e-10 sp|Q2FVW4|Y2577_STAA8 Putative 2-hydroxyacid dehydrogenase SAOUH... 64 6e-10 sp|Q6GEC9|Y2389_STAAR Putative 2-hydroxyacid dehydrogenase SAR23... 64 6e-10 sp|Q99RW8|Y2305_STAAM Putative 2-hydroxyacid dehydrogenase SAV23... 64 6e-10 sp|Q5HDQ4|Y2296_STAAC Putative 2-hydroxyacid dehydrogenase SACOL... 64 6e-10 sp|Q2FEI9|Y2254_STAA3 Putative 2-hydroxyacid dehydrogenase SAUSA... 64 6e-10 sp|Q8NV80|Y2224_STAAW Putative 2-hydroxyacid dehydrogenase MW222... 64 6e-10 sp|Q6G716|Y2196_STAAS Putative 2-hydroxyacid dehydrogenase SAS21... 64 6e-10 sp|Q2YYT9|Y2178_STAAB Putative 2-hydroxyacid dehydrogenase SAB21... 64 6e-10 sp|Q7A417|Y2098_STAAN Putative 2-hydroxyacid dehydrogenase SA209... 64 6e-10 sp|Q5HLU4|Y1888_STAEQ Putative 2-hydroxyacid dehydrogenase SERP1... 63 1e-09 sp|Q8CNB8|Y1879_STAES Putative 2-hydroxyacid dehydrogenase SE_18... 63 1e-09 sp|A1RYE4|GYAR_THEPD Glyoxylate reductase OS=Thermofilum pendens... 63 1e-09 sp|Q4L8G4|Y752_STAHJ Putative 2-hydroxyacid dehydrogenase SH0752... 62 3e-09 sp|O32264|TKRA_BACSU Probable 2-ketogluconate reductase OS=Bacil... 60 9e-09 sp|P36234|DHGY_HYPME Glycerate dehydrogenase OS=Hyphomicrobium m... 59 3e-08 sp|O08651|SERA_RAT D-3-phosphoglycerate dehydrogenase OS=Rattus ... 57 6e-08 sp|Q61753|SERA_MOUSE D-3-phosphoglycerate dehydrogenase OS=Mus m... 57 8e-08 sp|Q60HD7|SERA_MACFA D-3-phosphoglycerate dehydrogenase OS=Macac... 57 8e-08 sp|A5A6P1|SERA_PANTR D-3-phosphoglycerate dehydrogenase OS=Pan t... 57 1e-07 sp|O43175|SERA_HUMAN D-3-phosphoglycerate dehydrogenase OS=Homo ... 57 1e-07 sp|Q59642|LDHD_PEDAC D-lactate dehydrogenase OS=Pediococcus acid... 57 1e-07
>sp|P13443|DHGY_CUCSA Glycerate dehydrogenase OS=Cucumis sativus GN=HPR-A PE=2 SV=1 Length = 382
Score = 284 bits (726), Expect = 3e-76 Identities = 137/200 (68%), Positives = 158/200 (79%) Frame = +1
Query: 19 PLSVEVHNPHGKLRVISTKPMPGSRWIKLLVDAGCRVEICTEKKTILSVDDIKRLIGRKC 198 P+ +EV NP+GK RV+STKPMPG+RWI LL++ CRVEICTEKKTILSV+DI LIG KC Sbjct: 4 PVQIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTEKKTILSVEDILALIGDKC 63
Query: 199 DGVIGQLTEDWGDGLFSSLKAAGGHAYSNMAVGYNNVNVEAATRNGVAVGNTPGXXXXXX 378 DGVIGQLTEDWG+ LFS+L AGG A+SNMAVGYNNV+V AA + GVAVGNTPG Sbjct: 64 DGVIGQLTEDWGEVLFSALSRAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLTETT 123
Query: 379 XXXXXXXXXXXXXXXXXXDYFMRAGKYDGWLPTLFIGNLLKGQTVGIIGAGRIGSAYARM 558 D FMRAG+YDGWLP LF+GNLLKGQTVG+IGAGRIGSAYARM Sbjct: 124 AELAASLSLAAARRIVEADEFMRAGRYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARM 183
Query: 559 MVEGFKMNVVYYDLYQASRL 618 MVEGFKMN++Y+DLYQ++RL Sbjct: 184 MVEGFKMNLIYFDLYQSTRL 203
>sp|Q9C4M5|GYAR_THELI Glyoxylate reductase OS=Thermococcus litoralis GN=gyaR PE=1 SV=1 Length = 331
Score = 78.2 bits (191), Expect = 3e-14 Identities = 41/106 (38%), Positives = 60/106 (56%), Gaps = 4/106 (3%) Frame = +1
Query: 289 AVGYNNVNVEAATRNGVAVGNTPGXXXXXXXXXXXXXXXXXXXXXXXXDYFMRAGKYD-- 462 AVGY+N+++E AT+ G+ V NTPG D F+R+G++ Sbjct: 75 AVGYDNIDIEEATKRGIYVTNTPGVLTDATADLAFALLLAVARRIVEADAFVRSGEWKKS 134
Query: 463 --GWLPTLFIGNLLKGQTVGIIGAGRIGSAYARMMVEGFKMNVVYY 594 GW P +F+G LKG+T+GI+G GRIG A A+ +GF M ++YY Sbjct: 135 EVGWHPLMFLGYGLKGKTLGIVGFGRIGQALAK-RAKGFGMKIIYY 179
>sp|Q8U3Y2|GYAR_PYRFU Glyoxylate reductase OS=Pyrococcus furiosus GN=gyaR PE=3 SV=1 Length = 336
Score = 76.6 bits (187), Expect = 9e-14 Identities = 58/192 (30%), Positives = 94/192 (48%), Gaps = 4/192 (2%) Frame = +1
Query: 52 KLRVISTKPMPGSRWIKLLVDAGCRVEICTEKKTILSVDDIKRLIGRKCDGVIGQLTEDW 231 K +V T+ +P I +L + VE+ E++ I ++++ + D ++ L+E Sbjct: 2 KPKVFITRAIP-ENGINMLEEE-FEVEVWEEEREIPREKLLEKV--KDVDALVTMLSERI 57
Query: 232 GDGLFSSLKAAGGHAYSNMAVGYNNVNVEAATRNGVAVGNTPGXXXXXXXXXXXXXXXXX 411 +F + A +N AVGY+N++VE ATR G+ V NTP Sbjct: 58 DQEVFEN--APRLRIVANYAVGYDNIDVEEATRRGIYVTNTPDVLTNATADHAFALLLAT 115
Query: 412 XXXXXXXDYFMRAGKYD----GWLPTLFIGNLLKGQTVGIIGAGRIGSAYARMMVEGFKM 579 D F+R+G++ W P F+G L G+T+GI+G GRIG A AR +GF M Sbjct: 116 ARHVVKGDKFVRSGEWKRKGIAWHPKWFLGYELYGKTIGIVGFGRIGQAIAR-RAKGFNM 174
Query: 580 NVVYYDLYQASR 615 ++YY + S+ Sbjct: 175 RILYYSRTRKSQ 186
>sp|B1L765|GYAR_KORCO Glyoxylate reductase OS=Korarchaeum cryptofilum (strain OPF8) GN=gyaR PE=3 SV=1 Length = 332
Score = 76.6 bits (187), Expect = 9e-14 Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 1/137 (0%) Frame = +1
Query: 190 RKCDGVIGQLTEDWGDGLFSSLKAAGGHAYSNMAVGYNNVNVEAATRNGVAVGNTPGXXX 369 + CD ++ LT+ +F + A + AVGY+N++V+ AT+ G+ V NTPG Sbjct: 44 KDCDALVSLLTDPIDAEVFEA--APKLRIVAQYAVGYDNIDVKEATKRGIYVTNTPGVLT 101
Query: 370 XXXXXXXXXXXXXXXXXXXXXDYFMRAGKYD-GWLPTLFIGNLLKGQTVGIIGAGRIGSA 546 D ++R GK+ W P + +G + G+T+GI+G GRIG+A Sbjct: 102 ETTADFAFALLMAAARRVVEADRYVREGKWKVAWHPMMMLGYDVYGRTLGIVGMGRIGAA 161
Query: 547 YARMMVEGFKMNVVYYD 597 AR +GF M ++YYD Sbjct: 162 VAR-RAKGFGMRILYYD 177
>sp|Q5JEZ2|GYAR_PYRKO Glyoxylate reductase OS=Pyrococcus kodakaraensis GN=gyaR PE=3 SV=1 Length = 333
Score = 75.9 bits (185), Expect = 2e-13 Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 4/160 (2%) Frame = +1
Query: 127 VEICTEKKTILSVDDIKRLIGRKCDGVIGQLTEDWGDGLFSSLKAAGGHAYSNMAVGYNN 306 VE+ E++ I +K++ R D ++ L+E +F + A +N AVGY+N Sbjct: 25 VEVWPEEREIPREVLLKKV--RDVDALVTMLSERIDSEVFDA--APRLRIVANYAVGYDN 80
Query: 307 VNVEAATRNGVAVGNTPGXXXXXXXXXXXXXXXXXXXXXXXXDYFMRAGKYD----GWLP 474 ++VE ATR G+ V NTP D+F R+G++ W P Sbjct: 81 IDVEEATRRGIYVTNTPDVLTDATADFAWTLLLATARRLIEADHFTRSGEWKRRGIAWHP 140
Query: 475 TLFIGNLLKGQTVGIIGAGRIGSAYARMMVEGFKMNVVYY 594 F+G + G+T+GI+G GRIG A AR GF M ++YY Sbjct: 141 RWFLGYDVYGKTIGIVGFGRIGQAVAR-RARGFGMRILYY 179
>sp|O58320|GYAR_PYRHO Glyoxylate reductase OS=Pyrococcus horikoshii GN=gyaR PE=1 SV=2 Length = 334
Score = 75.9 bits (185), Expect = 2e-13 Identities = 57/185 (30%), Positives = 93/185 (50%), Gaps = 4/185 (2%) Frame = +1
Query: 52 KLRVISTKPMPGSRWIKLLVDAGCRVEICTEKKTILSVDDIKRLIGRKCDGVIGQLTEDW 231 K +V T+ +P IK+L D VE+ ++K I +K++ ++ D ++ L+E Sbjct: 2 KPKVFITREIP-EVGIKMLEDE-FEVEVWGDEKEIPREILLKKV--KEVDALVTMLSERI 57
Query: 232 GDGLFSSLKAAGGHAYSNMAVGYNNVNVEAATRNGVAVGNTPGXXXXXXXXXXXXXXXXX 411 +F + A +N AVGY+N+++E AT+ G+ V NTP Sbjct: 58 DKEVFEN--APKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLAT 115
Query: 412 XXXXXXXDYFMRAGKYD----GWLPTLFIGNLLKGQTVGIIGAGRIGSAYARMMVEGFKM 579 D F+R+G++ W P F+G + G+T+GIIG GRIG A A+ +GF M Sbjct: 116 ARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAK-RAKGFNM 174
Query: 580 NVVYY 594 ++YY Sbjct: 175 RILYY 179
>sp|Q9UYR1|GYAR_PYRAB Glyoxylate reductase OS=Pyrococcus abyssi GN=gyaR PE=3 SV=1 Length = 335
Score = 72.8 bits (177), Expect = 1e-12 Identities = 41/109 (37%), Positives = 57/109 (52%), Gaps = 4/109 (3%) Frame = +1
Query: 280 SNMAVGYNNVNVEAATRNGVAVGNTPGXXXXXXXXXXXXXXXXXXXXXXXXDYFMRAGKY 459 +N AVGY+N++VE AT+ G+ V NTPG D F R+G++ Sbjct: 73 ANYAVGYDNIDVEEATKRGIYVTNTPGVLTDATADLAFALLLATARHLVKGDKFTRSGEW 132
Query: 460 D----GWLPTLFIGNLLKGQTVGIIGAGRIGSAYARMMVEGFKMNVVYY 594 W P F+G + G+T+GIIG GRIG A A+ GF M ++YY Sbjct: 133 KKRGVAWHPKWFLGYDVYGKTIGIIGFGRIGQAIAK-RARGFDMRILYY 180
>sp|Q9YAW4|GYAR_AERPE Glyoxylate reductase OS=Aeropyrum pernix GN=gyaR PE=3 SV=2 Length = 335
Score = 70.5 bits (171), Expect = 7e-12 Identities = 39/109 (35%), Positives = 60/109 (55%), Gaps = 4/109 (3%) Frame = +1
Query: 280 SNMAVGYNNVNVEAATRNGVAVGNTPGXXXXXXXXXXXXXXXXXXXXXXXXDYFMRAGKY 459 + MAVG++N++VE ATR G+ V NTPG D+F+R G++ Sbjct: 73 AQMAVGFDNIDVECATRLGIYVTNTPGVLTEATAEFTWALILAAARRVVEADHFVRWGEW 132
Query: 460 ----DGWLPTLFIGNLLKGQTVGIIGAGRIGSAYARMMVEGFKMNVVYY 594 GW P + +G L+G+T+GI+G GRIGS A + + F M ++Y+ Sbjct: 133 WRLRTGWHPMMMLGVELRGKTLGILGMGRIGSRVAE-IGKAFGMRIIYH 180
>sp|Q49ZM5|Y606_STAS1 Putative 2-hydroxyacid dehydrogenase SSP0606 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP0606 PE=3 SV=1 Length = 318
Score = 65.9 bits (159), Expect = 2e-10 Identities = 48/170 (28%), Positives = 76/170 (44%) Frame = +1
Query: 97 IKLLVDAGCRVEICTEKKTILSVDDIKRLIGRKCDGVIGQLTEDWGDGLFSSLKAAGGHA 276 + LL D G V++ E I+ + +K+ + + D +I L+ + + A Sbjct: 15 LNLLKDQGFEVDMY-EGTGIIDKETLKQGV-KDADALISLLSTSVDKEVIDA--ANNLKI 70
Query: 277 YSNMAVGYNNVNVEAATRNGVAVGNTPGXXXXXXXXXXXXXXXXXXXXXXXXDYFMRAGK 456 +N G+NNV+++ A + + V NTP D R Sbjct: 71 ITNYGAGFNNVDIDYARQQNIDVTNTPKASTNSTAELTFALVLAVARRIPEGDKLCRTTG 130
Query: 457 YDGWLPTLFIGNLLKGQTVGIIGAGRIGSAYARMMVEGFKMNVVYYDLYQ 606 +DGW P F G + G+T+GIIG G IGSA AR + F MN++Y +Q Sbjct: 131 FDGWAPLFFRGREVSGKTIGIIGLGEIGSAVAR-RAKAFDMNILYTGPHQ 179
>sp|Q2FVW4|Y2577_STAA8 Putative 2-hydroxyacid dehydrogenase SAOUHSC_02577 OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_02577 PE=3 SV=1 Length = 317
Score = 63.9 bits (154), Expect = 6e-10 Identities = 35/104 (33%), Positives = 47/104 (45%) Frame = +1
Query: 280 SNMAVGYNNVNVEAATRNGVAVGNTPGXXXXXXXXXXXXXXXXXXXXXXXXDYFMRAGKY 459 +N G+NN+++E A + V NTP D R + Sbjct: 71 ANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGF 130
Query: 460 DGWLPTLFIGNLLKGQTVGIIGAGRIGSAYARMMVEGFKMNVVY 591 DGW P F G + G+T+GIIG G IGSA AR F M+V+Y Sbjct: 131 DGWAPLFFRGREVSGKTIGIIGLGEIGSAVAR-RARAFDMDVLY 173
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RE03 |
Definition |
tr|A9RE03|A9RE03_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
204 |
Score (bit) |
295.0 |
E-value |
2.0e-78 |
Report |
|