DK945707
Clone id YMU02A01NGRL0010_C23
Library
Length 361
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_C23. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
GATCCTTTTTTTCAATATTATCTTTTGTGATTCACAATACTAAATGGTTTGACTTAAGTC
TCATTCCTCAATCGGGAATTTCTACATCAGGCACACTCGGAAGTAATGTCCAACAACTTG
GATATAAATTATTGGGAGAATTCGTAATACCATTCGAACTTCTCTCGATACTTCTCCTAG
CTGCTTTAGTGGGAGCAATTAATCTAGCACGCAATGAAGATGCATTTATTGTCAATAAGA
AATCAGCTGCTTCAGCACCCTACAAAAATTCTACATTTTTCTAACCGACGGAGAATTATT
TAAATAGAAATTTATATTGAAGCCCCGGGAAAAAAAAAAAAAAAAAAAAAAAAAAACATG
T
■■Homology search results ■■ -
sp_hit_id Q85FH2
Definition sp|Q85FH2|NU6C_ADICA NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Adiantum capillus-veneris
Align length 91
Score (bit) 140.0
E-value 2.0e-33
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945707|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_C23, 5'
(329 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q85FH2|NU6C_ADICA NAD(P)H-quinone oxidoreductase subunit 6, c... 140 2e-33
sp|Q6YXQ0|NU6C_PHYPA NAD(P)H-quinone oxidoreductase subunit 6, c... 42 0.001
sp|Q06GK8|NU6C_PIPCE NAD(P)H-quinone oxidoreductase subunit 6, c... 38 0.014
sp|Q6EVZ7|NU6C_NYMAL NAD(P)H-quinone oxidoreductase subunit 6, c... 38 0.018
sp|A1XG08|NU6C_NUPAD NAD(P)H-quinone oxidoreductase subunit 6, c... 38 0.018
sp|A6H5P5|NU6C_CYCTA NAD(P)H-quinone oxidoreductase subunit 6, c... 38 0.018
sp|B1VKI7|NU6C_CRYJA NAD(P)H-quinone oxidoreductase subunit 6, c... 38 0.018
sp|Q8WHX6|NU6C_PSINU NAD(P)H-quinone oxidoreductase subunit 6, c... 37 0.024
sp|Q7YJT1|NU6C_CALFG NAD(P)H-quinone oxidoreductase subunit 6, c... 37 0.031
sp|A4GYW9|NU6C_POPTR NAD(P)H-quinone oxidoreductase subunit 6, c... 35 0.12
sp|Q14FA5|NU6C_POPAL NAD(P)H-quinone oxidoreductase subunit 6, c... 35 0.12
sp|A6MMR0|NU6C_DIOEL NAD(P)H-quinone oxidoreductase subunit 6, c... 34 0.20
sp|Q09WW5|NU6C_MORIN NAD(P)H-quinone oxidoreductase subunit 6, c... 34 0.26
sp|Q0G9G6|NU6C_LIRTU NAD(P)H-quinone oxidoreductase subunit 6, c... 34 0.26
sp|Q70XW1|NU6C_AMBTC NAD(P)H-quinone oxidoreductase subunit 6, c... 34 0.26
sp|P06266|NU6C_MARPO NAD(P)H-quinone oxidoreductase subunit 6, c... 33 0.34
sp|A6MMH4|NU6C_CHLSC NAD(P)H-quinone oxidoreductase subunit 6, c... 33 0.34
sp|A8SEF8|NU6C_CERDE NAD(P)H-quinone oxidoreductase subunit 6, c... 33 0.34
sp|Q06R77|NU6C_JASNU NAD(P)H-quinone oxidoreductase subunit 6, c... 33 0.59
sp|A6MMZ8|NU6C_ILLOL NAD(P)H-quinone oxidoreductase subunit 6, c... 33 0.59
sp|Q5SCZ0|NU6C_HUPLU NAD(P)H-quinone oxidoreductase subunit 6, c... 33 0.59
sp|Q0ZIW5|NU6C_VITVI NAD(P)H-quinone oxidoreductase subunit 6, c... 32 0.76
sp|A9L9F0|NU6C_LEMMI NAD(P)H-quinone oxidoreductase subunit 6, c... 32 0.76
sp|Q3V4Y1|NU6C_ACOCL NAD(P)H-quinone oxidoreductase subunit 6, c... 32 0.76
sp|A9LYF3|NU6C_ACOAM NAD(P)H-quinone oxidoreductase subunit 6, c... 32 0.76
sp|Q95H44|NU6C_WHEAT NAD(P)H-quinone oxidoreductase subunit 6, c... 32 1.00
sp|A9QC80|NU6C_TRACE NAD(P)H-quinone oxidoreductase subunit 6, c... 32 1.00
sp|A1E9X7|NU6C_SORBI NAD(P)H-quinone oxidoreductase subunit 6, c... 32 1.00
sp|Q6ENP4|NU6C_SACOF NAD(P)H-quinone oxidoreductase subunit 6, c... 32 1.00
sp|Q6L3D7|NU6C_SACHY NAD(P)H-quinone oxidoreductase subunit 6, c... 32 1.00

>sp|Q85FH2|NU6C_ADICA NAD(P)H-quinone oxidoreductase subunit 6,
chloroplastic OS=Adiantum capillus-veneris GN=ndhG PE=2
SV=2
Length = 197

Score = 140 bits (353), Expect = 2e-33
Identities = 73/91 (80%), Positives = 73/91 (80%)
Frame = +3

Query: 9 FSILSFVIHNTKWFDLSLIPQSGISTSGTLGSNVQQLGYKLLGEFVIPFEXXXXXXXXXX 188
FSILSFVIHNTKW DLSLIPQSGISTSGTLGSNVQQLGYKLLGEFVIPFE
Sbjct: 107 FSILSFVIHNTKWSDLSLIPQSGISTSGTLGSNVQQLGYKLLGEFVIPFELLSILLLAAL 166

Query: 189 XXXXXXXRNEDAFIVNKKSAASAPYKNSTFF 281
RNEDAFIVNKKSAASAPYKNSTFF
Sbjct: 167 VGAINLARNEDAFIVNKKSAASAPYKNSTFF 197


>sp|Q6YXQ0|NU6C_PHYPA NAD(P)H-quinone oxidoreductase subunit 6,
chloroplastic OS=Physcomitrella patens GN=ndhG PE=3 SV=1
Length = 200

Score = 42.0 bits (97), Expect = 0.001
Identities = 24/92 (26%), Positives = 42/92 (45%)
Frame = +3

Query: 3 SFFSILSFVIHNTKWFDLSLIPQSGISTSGTLGSNVQQLGYKLLGEFVIPFEXXXXXXXX 182
SFF +++ ++ NT W ++++I +S NVQ++G LL ++++PFE
Sbjct: 110 SFFLLVNIIL-NTSWSNITVITESKGFLESNFTQNVQRIGSLLLTQYLLPFELLSIVLLV 168

Query: 183 XXXXXXXXXRNEDAFIVNKKSAASAPYKNSTF 278
R E+ NKK +TF
Sbjct: 169 ALIGAIVIARRENLIETNKKKVLQIKKSPTTF 200


>sp|Q06GK8|NU6C_PIPCE NAD(P)H-quinone oxidoreductase subunit 6,
chloroplastic OS=Piper cenocladum GN=ndhG PE=3 SV=1
Length = 176

Score = 38.1 bits (87), Expect = 0.014
Identities = 18/51 (35%), Positives = 32/51 (62%)
Frame = +3

Query: 6 FFSILSFVIHNTKWFDLSLIPQSGISTSGTLGSNVQQLGYKLLGEFVIPFE 158
FFS+++ ++ +T W+ + +S L SNVQQ+G L+ +F++PFE
Sbjct: 108 FFSLITTIL-DTSWYGIIWTTRSNQIMEQDLLSNVQQIGIHLVTDFILPFE 157


>sp|Q6EVZ7|NU6C_NYMAL NAD(P)H-quinone oxidoreductase subunit 6,
chloroplastic OS=Nymphaea alba GN=ndhG PE=3 SV=1
Length = 177

Score = 37.7 bits (86), Expect = 0.018
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +3

Query: 6 FFSILSFVIHNTKWFDLSLIPQSGISTSGTLGSNVQQLGYKLLGEFVIPFE 158
FFS+++ I NT W+ + +S L SNVQQ+G L +F +PFE
Sbjct: 108 FFSLIA-TIPNTSWYGIIWTTRSNQIIEQDLTSNVQQIGIHLSTDFYLPFE 157


>sp|A1XG08|NU6C_NUPAD NAD(P)H-quinone oxidoreductase subunit 6,
chloroplastic OS=Nuphar advena GN=ndhG PE=3 SV=1
Length = 177

Score = 37.7 bits (86), Expect = 0.018
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +3

Query: 6 FFSILSFVIHNTKWFDLSLIPQSGISTSGTLGSNVQQLGYKLLGEFVIPFE 158
FFS+++ I NT W+ + +S L SNVQQ+G L +F +PFE
Sbjct: 108 FFSLIA-TIPNTSWYGIIWTTRSNQIIEQDLTSNVQQIGIHLSTDFYLPFE 157


>sp|A6H5P5|NU6C_CYCTA NAD(P)H-quinone oxidoreductase subunit 6,
chloroplastic OS=Cycas taitungensis GN=ndhG PE=3 SV=1
Length = 180

Score = 37.7 bits (86), Expect = 0.018
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = +3

Query: 3 SFFSILSFVIHNTKWFDLSLIPQSGISTSGTLGSNVQQLGYKLLGEFVIPFE 158
S F L +I NT W ++S+ +S L +NVQ++G L +F +PFE
Sbjct: 106 SLFCSLITIILNTSWSEISMTTKSNQILEQDLTNNVQRIGAHLSTDFFLPFE 157


>sp|B1VKI7|NU6C_CRYJA NAD(P)H-quinone oxidoreductase subunit 6,
chloroplastic OS=Cryptomeria japonica GN=ndhG PE=3 SV=1
Length = 180

Score = 37.7 bits (86), Expect = 0.018
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +3

Query: 3 SFFSILSFVIHNTKWFDLSLIPQSGISTSGTLGSNVQQLGYKLLGEFVIPFE 158
S F L +I N WF +SL +S L +N+Q++G L +F +PFE
Sbjct: 106 SLFCSLITIILNISWFGISLTQKSDQMLERDLTNNIQRIGAHLSTDFFLPFE 157


>sp|Q8WHX6|NU6C_PSINU NAD(P)H-quinone oxidoreductase subunit 6,
chloroplastic OS=Psilotum nudum GN=ndhG PE=3 SV=1
Length = 188

Score = 37.4 bits (85), Expect = 0.024
Identities = 21/52 (40%), Positives = 29/52 (55%)
Frame = +3

Query: 3 SFFSILSFVIHNTKWFDLSLIPQSGISTSGTLGSNVQQLGYKLLGEFVIPFE 158
S F L +I +T W + I +S L SNVQ +G +LL EF++PFE
Sbjct: 107 SLFLFLVSIILDTSWSQIYSIKKSTKIFEPILKSNVQLIGSQLLTEFLLPFE 158


>sp|Q7YJT1|NU6C_CALFG NAD(P)H-quinone oxidoreductase subunit 6,
chloroplastic OS=Calycanthus floridus var. glaucus
GN=ndhG PE=3 SV=1
Length = 176

Score = 37.0 bits (84), Expect = 0.031
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +3

Query: 9 FSILSFVIHNTKWFDLSLIPQSGISTSGTLGSNVQQLGYKLLGEFVIPFE 158
FS+++ I NT W+ + +S L SNVQQ+G +L +F +PFE
Sbjct: 109 FSLIT-TIWNTSWYGIIWTTRSNQIIEQDLTSNVQQIGIRLATDFYLPFE 157


>sp|A4GYW9|NU6C_POPTR NAD(P)H-quinone oxidoreductase subunit 6,
chloroplastic OS=Populus trichocarpa GN=ndhG PE=3 SV=1
Length = 176

Score = 35.0 bits (79), Expect = 0.12
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +3

Query: 3 SFFSILSFVIHNTKWFDLSLIPQSGISTSGTLGSNVQQLGYKLLGEFVIPFE 158
S F +L +I NT W+ + ++ L SN QQ+G L +F +PFE
Sbjct: 106 SLFVLLITIISNTTWYGIIWTTRANQIIEQDLVSNGQQIGIHLSTDFFLPFE 157


tr_hit_id A9QB43
Definition tr|A9QB43|A9QB43_9SPER NAD(P)H-quinone oxidoreductase chain 6, chloroplast (Fragment) OS=Cycas micronesica
Align length 52
Score (bit) 37.7
E-value 0.28
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945707|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_C23, 5'
(329 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9QB43|A9QB43_9SPER NAD(P)H-quinone oxidoreductase chain 6, c... 38 0.28
tr|A9QBF9|A9QBF9_GINBI NAD(P)H-quinone oxidoreductase chain 6, c... 36 0.83
tr|B7T443|B7T443_9ROSI NADH-plastoquinone oxidoreductase subunit... 36 1.1
tr|B6D430|B6D430_9MARC NADH-plastoquinone oxidoreductase subunit... 34 3.1
tr|A9QBB9|A9QBB9_ELAOL NAD(P)H-quinone oxidoreductase chain 6, c... 33 5.4
tr|B7UYC2|B7UYC2_PSEAE Putative uncharacterized protein OS=Pseud... 33 9.1
tr|A9QBL2|A9QBL2_MUSAC NAD(P)H-quinone oxidoreductase chain 6, c... 33 9.1

>tr|A9QB43|A9QB43_9SPER NAD(P)H-quinone oxidoreductase chain 6,
chloroplast (Fragment) OS=Cycas micronesica GN=ndhG PE=3
SV=1
Length = 180

Score = 37.7 bits (86), Expect = 0.28
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = +3

Query: 3 SFFSILSFVIHNTKWFDLSLIPQSGISTSGTLGSNVQQLGYKLLGEFVIPFE 158
S F L +I NT W ++S+ +S L +NVQ++G L +F +PFE
Sbjct: 106 SLFCSLITIILNTSWSEISMTTKSNQILEQDLTNNVQRIGAHLSTDFFLPFE 157


>tr|A9QBF9|A9QBF9_GINBI NAD(P)H-quinone oxidoreductase chain 6,
chloroplast (Fragment) OS=Ginkgo biloba GN=ndhG PE=3
SV=1
Length = 176

Score = 36.2 bits (82), Expect = 0.83
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +3

Query: 3 SFFSILSFVIHNTKWFDLSLIPQSGISTSGTLGSNVQQLGYKLLGEFVIPFE 158
S F L +I NT W +SL + L +N+Q++G L +F++PFE
Sbjct: 106 SLFCSLITIILNTSWSVISLTTELNQFLEQDLTNNIQRIGVHLSTDFILPFE 157


>tr|B7T443|B7T443_9ROSI NADH-plastoquinone oxidoreductase subunit 6
OS=Pelargonium cotyledonis GN=ndhG PE=4 SV=1
Length = 176

Score = 35.8 bits (81), Expect = 1.1
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = +3

Query: 6 FFSILSFVIHNTKWFDLSLIPQSGISTSGTLGSNVQQLGYKLLGEFVIPFE 158
FFS+++ ++ NT W+ + +S L SN QQLG L +F +PFE
Sbjct: 108 FFSLITTIL-NTSWYGIIWTTRSNQIIEKDLISNSQQLGIHLSTDFFLPFE 157


>tr|B6D430|B6D430_9MARC NADH-plastoquinone oxidoreductase subunit 6
OS=Aneura pinguis GN=ndhG PE=4 SV=1
Length = 192

Score = 34.3 bits (77), Expect = 3.1
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +3

Query: 9 FSILSFVIHNTKWFDLSLIPQSGISTSGTLGSNVQQLGYKLLGEFVIPFE 158
F + I NT W ++ LI +S N++++G +L+ EF IPFE
Sbjct: 107 FLLSDNTISNTSWSEVYLIARSNDDEGIVPMDNIRRIGLELVTEFFIPFE 156


>tr|A9QBB9|A9QBB9_ELAOL NAD(P)H-quinone oxidoreductase chain 6,
chloroplast (Fragment) OS=Elaeis oleifera GN=ndhG PE=3
SV=1
Length = 176

Score = 33.5 bits (75), Expect = 5.4
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = +3

Query: 9 FSILSFVIHNTKWFDLSLIPQSGISTSGTLGSNVQQLGYKLLGEFVIPFE 158
FS+++ +I +T W+ + +S L SN+QQ+G L +F +PFE
Sbjct: 109 FSLIT-IIPDTSWYGIFWTTRSSQIMEQDLISNIQQIGIHLSTDFYLPFE 157


>tr|B7UYC2|B7UYC2_PSEAE Putative uncharacterized protein
OS=Pseudomonas aeruginosa LESB58 GN=PLES_45041 PE=4 SV=1
Length = 730

Score = 32.7 bits (73), Expect = 9.1
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = -2

Query: 256 AEAADFLLTINASSLRARLIAPTKAARRSIERSSNGITNS 137
++AA+ L++ SL+ LIAPT A R + +NG+ +S
Sbjct: 221 SQAAEAFLSVTGRSLQIPLIAPTDALAREVTLGANGLIDS 260


>tr|A9QBL2|A9QBL2_MUSAC NAD(P)H-quinone oxidoreductase chain 6,
chloroplast (Fragment) OS=Musa acuminata GN=ndhG PE=3
SV=1
Length = 176

Score = 32.7 bits (73), Expect = 9.1
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +3

Query: 9 FSILSFVIHNTKWFDLSLIPQSGISTSGTLGSNVQQLGYKLLGEFVIPFE 158
FS+++ I +T W+ + +S L SNVQQ+G L +F +PFE
Sbjct: 109 FSLIT-TIPDTSWYGIIWTTRSNQIIEQDLISNVQQIGIHLSTDFYLPFE 157