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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945707
Clone id YMU02A01NGRL0010_C23
Library
Length 361
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_C23. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GATCCTTTTTTTCAATATTATCTTTTGTGATTCACAATACTAAATGGTTTGACTTAAGTC
TCATTCCTCAATCGGGAATTTCTACATCAGGCACACTCGGAAGTAATGTCCAACAACTTG
GATATAAATTATTGGGAGAATTCGTAATACCATTCGAACTTCTCTCGATACTTCTCCTAG
CTGCTTTAGTGGGAGCAATTAATCTAGCACGCAATGAAGATGCATTTATTGTCAATAAGA
AATCAGCTGCTTCAGCACCCTACAAAAATTCTACATTTTTCTAACCGACGGAGAATTATT
TAAATAGAAATTTATATTGAAGCCCCGGGAAAAAAAAAAAAAAAAAAAAAAAAAAACATG
T
■■Homology search results ■■ -
sp_hit_id Q85FH2
Definition sp|Q85FH2|NU6C_ADICA NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Adiantum capillus-veneris
Align length 91
Score (bit) 140.0
E-value 2.0e-33
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945707|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_C23, 5'
         (329 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q85FH2|NU6C_ADICA NAD(P)H-quinone oxidoreductase subunit 6, c...   140   2e-33
sp|Q6YXQ0|NU6C_PHYPA NAD(P)H-quinone oxidoreductase subunit 6, c...    42   0.001
sp|Q06GK8|NU6C_PIPCE NAD(P)H-quinone oxidoreductase subunit 6, c...    38   0.014
sp|Q6EVZ7|NU6C_NYMAL NAD(P)H-quinone oxidoreductase subunit 6, c...    38   0.018
sp|A1XG08|NU6C_NUPAD NAD(P)H-quinone oxidoreductase subunit 6, c...    38   0.018
sp|A6H5P5|NU6C_CYCTA NAD(P)H-quinone oxidoreductase subunit 6, c...    38   0.018
sp|B1VKI7|NU6C_CRYJA NAD(P)H-quinone oxidoreductase subunit 6, c...    38   0.018
sp|Q8WHX6|NU6C_PSINU NAD(P)H-quinone oxidoreductase subunit 6, c...    37   0.024
sp|Q7YJT1|NU6C_CALFG NAD(P)H-quinone oxidoreductase subunit 6, c...    37   0.031
sp|A4GYW9|NU6C_POPTR NAD(P)H-quinone oxidoreductase subunit 6, c...    35   0.12 
sp|Q14FA5|NU6C_POPAL NAD(P)H-quinone oxidoreductase subunit 6, c...    35   0.12 
sp|A6MMR0|NU6C_DIOEL NAD(P)H-quinone oxidoreductase subunit 6, c...    34   0.20 
sp|Q09WW5|NU6C_MORIN NAD(P)H-quinone oxidoreductase subunit 6, c...    34   0.26 
sp|Q0G9G6|NU6C_LIRTU NAD(P)H-quinone oxidoreductase subunit 6, c...    34   0.26 
sp|Q70XW1|NU6C_AMBTC NAD(P)H-quinone oxidoreductase subunit 6, c...    34   0.26 
sp|P06266|NU6C_MARPO NAD(P)H-quinone oxidoreductase subunit 6, c...    33   0.34 
sp|A6MMH4|NU6C_CHLSC NAD(P)H-quinone oxidoreductase subunit 6, c...    33   0.34 
sp|A8SEF8|NU6C_CERDE NAD(P)H-quinone oxidoreductase subunit 6, c...    33   0.34 
sp|Q06R77|NU6C_JASNU NAD(P)H-quinone oxidoreductase subunit 6, c...    33   0.59 
sp|A6MMZ8|NU6C_ILLOL NAD(P)H-quinone oxidoreductase subunit 6, c...    33   0.59 
sp|Q5SCZ0|NU6C_HUPLU NAD(P)H-quinone oxidoreductase subunit 6, c...    33   0.59 
sp|Q0ZIW5|NU6C_VITVI NAD(P)H-quinone oxidoreductase subunit 6, c...    32   0.76 
sp|A9L9F0|NU6C_LEMMI NAD(P)H-quinone oxidoreductase subunit 6, c...    32   0.76 
sp|Q3V4Y1|NU6C_ACOCL NAD(P)H-quinone oxidoreductase subunit 6, c...    32   0.76 
sp|A9LYF3|NU6C_ACOAM NAD(P)H-quinone oxidoreductase subunit 6, c...    32   0.76 
sp|Q95H44|NU6C_WHEAT NAD(P)H-quinone oxidoreductase subunit 6, c...    32   1.00 
sp|A9QC80|NU6C_TRACE NAD(P)H-quinone oxidoreductase subunit 6, c...    32   1.00 
sp|A1E9X7|NU6C_SORBI NAD(P)H-quinone oxidoreductase subunit 6, c...    32   1.00 
sp|Q6ENP4|NU6C_SACOF NAD(P)H-quinone oxidoreductase subunit 6, c...    32   1.00 
sp|Q6L3D7|NU6C_SACHY NAD(P)H-quinone oxidoreductase subunit 6, c...    32   1.00 

>sp|Q85FH2|NU6C_ADICA NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic OS=Adiantum capillus-veneris GN=ndhG PE=2
           SV=2
          Length = 197

 Score =  140 bits (353), Expect = 2e-33
 Identities = 73/91 (80%), Positives = 73/91 (80%)
 Frame = +3

Query: 9   FSILSFVIHNTKWFDLSLIPQSGISTSGTLGSNVQQLGYKLLGEFVIPFEXXXXXXXXXX 188
           FSILSFVIHNTKW DLSLIPQSGISTSGTLGSNVQQLGYKLLGEFVIPFE          
Sbjct: 107 FSILSFVIHNTKWSDLSLIPQSGISTSGTLGSNVQQLGYKLLGEFVIPFELLSILLLAAL 166

Query: 189 XXXXXXXRNEDAFIVNKKSAASAPYKNSTFF 281
                  RNEDAFIVNKKSAASAPYKNSTFF
Sbjct: 167 VGAINLARNEDAFIVNKKSAASAPYKNSTFF 197


>sp|Q6YXQ0|NU6C_PHYPA NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic OS=Physcomitrella patens GN=ndhG PE=3 SV=1
          Length = 200

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 24/92 (26%), Positives = 42/92 (45%)
 Frame = +3

Query: 3   SFFSILSFVIHNTKWFDLSLIPQSGISTSGTLGSNVQQLGYKLLGEFVIPFEXXXXXXXX 182
           SFF +++ ++ NT W ++++I +S          NVQ++G  LL ++++PFE        
Sbjct: 110 SFFLLVNIIL-NTSWSNITVITESKGFLESNFTQNVQRIGSLLLTQYLLPFELLSIVLLV 168

Query: 183 XXXXXXXXXRNEDAFIVNKKSAASAPYKNSTF 278
                    R E+    NKK         +TF
Sbjct: 169 ALIGAIVIARRENLIETNKKKVLQIKKSPTTF 200


>sp|Q06GK8|NU6C_PIPCE NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic OS=Piper cenocladum GN=ndhG PE=3 SV=1
          Length = 176

 Score = 38.1 bits (87), Expect = 0.014
 Identities = 18/51 (35%), Positives = 32/51 (62%)
 Frame = +3

Query: 6   FFSILSFVIHNTKWFDLSLIPQSGISTSGTLGSNVQQLGYKLLGEFVIPFE 158
           FFS+++ ++ +T W+ +    +S       L SNVQQ+G  L+ +F++PFE
Sbjct: 108 FFSLITTIL-DTSWYGIIWTTRSNQIMEQDLLSNVQQIGIHLVTDFILPFE 157


>sp|Q6EVZ7|NU6C_NYMAL NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic OS=Nymphaea alba GN=ndhG PE=3 SV=1
          Length = 177

 Score = 37.7 bits (86), Expect = 0.018
 Identities = 20/51 (39%), Positives = 29/51 (56%)
 Frame = +3

Query: 6   FFSILSFVIHNTKWFDLSLIPQSGISTSGTLGSNVQQLGYKLLGEFVIPFE 158
           FFS+++  I NT W+ +    +S       L SNVQQ+G  L  +F +PFE
Sbjct: 108 FFSLIA-TIPNTSWYGIIWTTRSNQIIEQDLTSNVQQIGIHLSTDFYLPFE 157


>sp|A1XG08|NU6C_NUPAD NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic OS=Nuphar advena GN=ndhG PE=3 SV=1
          Length = 177

 Score = 37.7 bits (86), Expect = 0.018
 Identities = 20/51 (39%), Positives = 29/51 (56%)
 Frame = +3

Query: 6   FFSILSFVIHNTKWFDLSLIPQSGISTSGTLGSNVQQLGYKLLGEFVIPFE 158
           FFS+++  I NT W+ +    +S       L SNVQQ+G  L  +F +PFE
Sbjct: 108 FFSLIA-TIPNTSWYGIIWTTRSNQIIEQDLTSNVQQIGIHLSTDFYLPFE 157


>sp|A6H5P5|NU6C_CYCTA NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic OS=Cycas taitungensis GN=ndhG PE=3 SV=1
          Length = 180

 Score = 37.7 bits (86), Expect = 0.018
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = +3

Query: 3   SFFSILSFVIHNTKWFDLSLIPQSGISTSGTLGSNVQQLGYKLLGEFVIPFE 158
           S F  L  +I NT W ++S+  +S       L +NVQ++G  L  +F +PFE
Sbjct: 106 SLFCSLITIILNTSWSEISMTTKSNQILEQDLTNNVQRIGAHLSTDFFLPFE 157


>sp|B1VKI7|NU6C_CRYJA NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic OS=Cryptomeria japonica GN=ndhG PE=3 SV=1
          Length = 180

 Score = 37.7 bits (86), Expect = 0.018
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = +3

Query: 3   SFFSILSFVIHNTKWFDLSLIPQSGISTSGTLGSNVQQLGYKLLGEFVIPFE 158
           S F  L  +I N  WF +SL  +S       L +N+Q++G  L  +F +PFE
Sbjct: 106 SLFCSLITIILNISWFGISLTQKSDQMLERDLTNNIQRIGAHLSTDFFLPFE 157


>sp|Q8WHX6|NU6C_PSINU NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic OS=Psilotum nudum GN=ndhG PE=3 SV=1
          Length = 188

 Score = 37.4 bits (85), Expect = 0.024
 Identities = 21/52 (40%), Positives = 29/52 (55%)
 Frame = +3

Query: 3   SFFSILSFVIHNTKWFDLSLIPQSGISTSGTLGSNVQQLGYKLLGEFVIPFE 158
           S F  L  +I +T W  +  I +S       L SNVQ +G +LL EF++PFE
Sbjct: 107 SLFLFLVSIILDTSWSQIYSIKKSTKIFEPILKSNVQLIGSQLLTEFLLPFE 158


>sp|Q7YJT1|NU6C_CALFG NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic OS=Calycanthus floridus var. glaucus
           GN=ndhG PE=3 SV=1
          Length = 176

 Score = 37.0 bits (84), Expect = 0.031
 Identities = 19/50 (38%), Positives = 29/50 (58%)
 Frame = +3

Query: 9   FSILSFVIHNTKWFDLSLIPQSGISTSGTLGSNVQQLGYKLLGEFVIPFE 158
           FS+++  I NT W+ +    +S       L SNVQQ+G +L  +F +PFE
Sbjct: 109 FSLIT-TIWNTSWYGIIWTTRSNQIIEQDLTSNVQQIGIRLATDFYLPFE 157


>sp|A4GYW9|NU6C_POPTR NAD(P)H-quinone oxidoreductase subunit 6,
           chloroplastic OS=Populus trichocarpa GN=ndhG PE=3 SV=1
          Length = 176

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +3

Query: 3   SFFSILSFVIHNTKWFDLSLIPQSGISTSGTLGSNVQQLGYKLLGEFVIPFE 158
           S F +L  +I NT W+ +    ++       L SN QQ+G  L  +F +PFE
Sbjct: 106 SLFVLLITIISNTTWYGIIWTTRANQIIEQDLVSNGQQIGIHLSTDFFLPFE 157
tr_hit_id A9QB43
Definition tr|A9QB43|A9QB43_9SPER NAD(P)H-quinone oxidoreductase chain 6, chloroplast (Fragment) OS=Cycas micronesica
Align length 52
Score (bit) 37.7
E-value 0.28
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945707|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_C23, 5'
         (329 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9QB43|A9QB43_9SPER NAD(P)H-quinone oxidoreductase chain 6, c...    38   0.28 
tr|A9QBF9|A9QBF9_GINBI NAD(P)H-quinone oxidoreductase chain 6, c...    36   0.83 
tr|B7T443|B7T443_9ROSI NADH-plastoquinone oxidoreductase subunit...    36   1.1  
tr|B6D430|B6D430_9MARC NADH-plastoquinone oxidoreductase subunit...    34   3.1  
tr|A9QBB9|A9QBB9_ELAOL NAD(P)H-quinone oxidoreductase chain 6, c...    33   5.4  
tr|B7UYC2|B7UYC2_PSEAE Putative uncharacterized protein OS=Pseud...    33   9.1  
tr|A9QBL2|A9QBL2_MUSAC NAD(P)H-quinone oxidoreductase chain 6, c...    33   9.1  

>tr|A9QB43|A9QB43_9SPER NAD(P)H-quinone oxidoreductase chain 6,
           chloroplast (Fragment) OS=Cycas micronesica GN=ndhG PE=3
           SV=1
          Length = 180

 Score = 37.7 bits (86), Expect = 0.28
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = +3

Query: 3   SFFSILSFVIHNTKWFDLSLIPQSGISTSGTLGSNVQQLGYKLLGEFVIPFE 158
           S F  L  +I NT W ++S+  +S       L +NVQ++G  L  +F +PFE
Sbjct: 106 SLFCSLITIILNTSWSEISMTTKSNQILEQDLTNNVQRIGAHLSTDFFLPFE 157


>tr|A9QBF9|A9QBF9_GINBI NAD(P)H-quinone oxidoreductase chain 6,
           chloroplast (Fragment) OS=Ginkgo biloba GN=ndhG PE=3
           SV=1
          Length = 176

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +3

Query: 3   SFFSILSFVIHNTKWFDLSLIPQSGISTSGTLGSNVQQLGYKLLGEFVIPFE 158
           S F  L  +I NT W  +SL  +        L +N+Q++G  L  +F++PFE
Sbjct: 106 SLFCSLITIILNTSWSVISLTTELNQFLEQDLTNNIQRIGVHLSTDFILPFE 157


>tr|B7T443|B7T443_9ROSI NADH-plastoquinone oxidoreductase subunit 6
           OS=Pelargonium cotyledonis GN=ndhG PE=4 SV=1
          Length = 176

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 19/51 (37%), Positives = 29/51 (56%)
 Frame = +3

Query: 6   FFSILSFVIHNTKWFDLSLIPQSGISTSGTLGSNVQQLGYKLLGEFVIPFE 158
           FFS+++ ++ NT W+ +    +S       L SN QQLG  L  +F +PFE
Sbjct: 108 FFSLITTIL-NTSWYGIIWTTRSNQIIEKDLISNSQQLGIHLSTDFFLPFE 157


>tr|B6D430|B6D430_9MARC NADH-plastoquinone oxidoreductase subunit 6
           OS=Aneura pinguis GN=ndhG PE=4 SV=1
          Length = 192

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +3

Query: 9   FSILSFVIHNTKWFDLSLIPQSGISTSGTLGSNVQQLGYKLLGEFVIPFE 158
           F +    I NT W ++ LI +S          N++++G +L+ EF IPFE
Sbjct: 107 FLLSDNTISNTSWSEVYLIARSNDDEGIVPMDNIRRIGLELVTEFFIPFE 156


>tr|A9QBB9|A9QBB9_ELAOL NAD(P)H-quinone oxidoreductase chain 6,
           chloroplast (Fragment) OS=Elaeis oleifera GN=ndhG PE=3
           SV=1
          Length = 176

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 17/50 (34%), Positives = 29/50 (58%)
 Frame = +3

Query: 9   FSILSFVIHNTKWFDLSLIPQSGISTSGTLGSNVQQLGYKLLGEFVIPFE 158
           FS+++ +I +T W+ +    +S       L SN+QQ+G  L  +F +PFE
Sbjct: 109 FSLIT-IIPDTSWYGIFWTTRSSQIMEQDLISNIQQIGIHLSTDFYLPFE 157


>tr|B7UYC2|B7UYC2_PSEAE Putative uncharacterized protein
           OS=Pseudomonas aeruginosa LESB58 GN=PLES_45041 PE=4 SV=1
          Length = 730

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = -2

Query: 256 AEAADFLLTINASSLRARLIAPTKAARRSIERSSNGITNS 137
           ++AA+  L++   SL+  LIAPT A  R +   +NG+ +S
Sbjct: 221 SQAAEAFLSVTGRSLQIPLIAPTDALAREVTLGANGLIDS 260


>tr|A9QBL2|A9QBL2_MUSAC NAD(P)H-quinone oxidoreductase chain 6,
           chloroplast (Fragment) OS=Musa acuminata GN=ndhG PE=3
           SV=1
          Length = 176

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = +3

Query: 9   FSILSFVIHNTKWFDLSLIPQSGISTSGTLGSNVQQLGYKLLGEFVIPFE 158
           FS+++  I +T W+ +    +S       L SNVQQ+G  L  +F +PFE
Sbjct: 109 FSLIT-TIPDTSWYGIIWTTRSNQIIEQDLISNVQQIGIHLSTDFYLPFE 157