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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945725
Clone id YMU02A01NGRL0010_D23
Library
Length 288
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_D23. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
TATCAATGTAGGTGTATTCTCTTGAAGTAGAGCATTGCCAAGGTCCATAGCAGAGGGTGT
GCCACGGAGAAATCATGATCCTGATCTGTGGCTGAAATGCAGTACATTGGGAGTCTTTGA
GGAGTCCTCAGCTGGATCTCTTTTGTCTGTCTGTCTATCGGTGGATTGTCGTGTGAATAA
GAACAGTTAGTTGGCTTGAAATTGTAGTGTTCAAGTGTATTACAGCTCCAATTTAAGTGG
TGAAAAGGTTGATTCTCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P54834
Definition sp|P54834|TYRO_CANFA Tyrosinase OS=Canis familiaris
Align length 56
Score (bit) 28.9
E-value 8.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945725|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_D23, 5'
         (258 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P54834|TYRO_CANFA Tyrosinase OS=Canis familiaris GN=TYR PE=2 ...    29   8.2  

>sp|P54834|TYRO_CANFA Tyrosinase OS=Canis familiaris GN=TYR PE=2
           SV=2
          Length = 530

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
 Frame = -2

Query: 224 CNTLEHYNFKPTNCSYSHDNPPIDRQTKEIQLRTPQRLPM-----YCISATDQDHD 72
           C  LE YN +   C  + + P +       + RTP RLP      +C+S T  + D
Sbjct: 276 CTRLEEYNSRQALCDGTPEGPLLRNPGNHDKARTP-RLPSSADVEFCLSLTQYESD 330
tr_hit_id A8L228
Definition tr|A8L228|A8L228_FRASN Putative transcriptional regulator OS=Frankia sp. (strain EAN1pec)
Align length 46
Score (bit) 33.1
E-value 7.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945725|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_D23, 5'
         (258 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8L228|A8L228_FRASN Putative transcriptional regulator OS=Fra...    33   7.1  

>tr|A8L228|A8L228_FRASN Putative transcriptional regulator
           OS=Frankia sp. (strain EAN1pec) GN=Franean1_5330 PE=4
           SV=1
          Length = 152

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 19/46 (41%), Positives = 22/46 (47%)
 Frame = -2

Query: 248 PFHHLNWSCNTLEHYNFKPTNCSYSHDNPPIDRQTKEIQLRTPQRL 111
           P  HL      LE  +  P+N    H  PPIDRQ   + LR  QRL
Sbjct: 80  PDDHLTRVLVHLEGTSETPSNQGEDHGGPPIDRQILAVLLRIEQRL 125