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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945737
Clone id YMU02A01NGRL0010_E15
Library
Length 413
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_E15. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGC
GCGCAAATTACCCAATCCCGACACGGGGAGGTAGTGACAATAAATAACAATACTGGGCTT
TTTCAAGTCTGGTAATTGGAATGAGTACAATCTAAATCCCTTAACGAGGATCCATTGGAG
GGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGT
TGCAGTTAAAAAGCTCGTAGTTGGATCTCGGGGCGGGGCGAGCGGTCCGCCTCTTTTGGT
GTGCACTGGTCGCTCCGCCCTTTCTGTCGGGGACGCGCTCCTGGCCTTAATTGGCTGGGA
CGCGGATTCGGCGATGTTACTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P07645
Definition sp|P07645|VGLD_SUHVR Protein gp50 OS=Suid herpesvirus 1 (strain Rice)
Align length 35
Score (bit) 32.3
E-value 0.74
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945737|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_E15, 5'
         (384 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P07645|VGLD_SUHVR Protein gp50 OS=Suid herpesvirus 1 (strain ...    32   0.74 
sp|Q3AHW1|IF2_SYNSC Translation initiation factor IF-2 OS=Synech...    32   0.74 
sp|Q9H252|KCNH6_HUMAN Potassium voltage-gated channel subfamily ...    32   1.3  
sp|Q06J40|PSAB_BIGNA Photosystem I P700 chlorophyll a apoprotein...    31   2.2  
sp|Q7TQM5|KPRP_RAT Keratinocyte proline-rich protein OS=Rattus n...    30   2.8  
sp|Q5XHY8|CF146_RAT Uncharacterized protein C6orf146 homolog OS=...    30   3.8  
sp|Q1DQC1|PAN1_COCIM Actin cytoskeleton-regulatory complex prote...    30   4.8  
sp|Q9Y794|ORC4_SCHPO Origin recognition complex subunit 4 OS=Sch...    30   4.8  
sp|A7Z026|LRC68_BOVIN Leucine-rich repeat-containing protein 68 ...    30   4.9  
sp|Q8K4G1|LTBP4_MOUSE Latent-transforming growth factor beta-bin...    29   6.3  
sp|A1WUX1|SYP_HALHL Prolyl-tRNA synthetase OS=Halorhodospira hal...    29   8.2  
sp|Q66K74|MAP1S_HUMAN Microtubule-associated protein 1S OS=Homo ...    29   8.2  
sp|Q9NPZ5|B3GA2_HUMAN Galactosylgalactosylxylosylprotein 3-beta-...    29   8.2  
sp|Q5KAI2|DBP7_CRYNE ATP-dependent RNA helicase DBP7 OS=Cryptoco...    29   8.4  

>sp|P07645|VGLD_SUHVR Protein gp50 OS=Suid herpesvirus 1 (strain
           Rice) PE=3 SV=1
          Length = 402

 Score = 32.3 bits (72), Expect = 0.74
 Identities = 17/35 (48%), Positives = 17/35 (48%)
 Frame = -2

Query: 374 SPNPRPSQLRPGARPRQKGRSDQCTPKEADRSPRP 270
           SP PRP   RP  RPR K      TP   DR P P
Sbjct: 266 SPRPRP---RPRPRPRPKPEPAPATPAPPDRLPEP 297


>sp|Q3AHW1|IF2_SYNSC Translation initiation factor IF-2
           OS=Synechococcus sp. (strain CC9605) GN=infB PE=3 SV=1
          Length = 1104

 Score = 32.3 bits (72), Expect = 0.74
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -2

Query: 383 KVTSPNPRPSQLRPGARPRQKGRSDQCTPKEADRSPRPEI 264
           K T+P PRP+  RP  RP   G   + TP +    P+P+I
Sbjct: 186 KPTAPTPRPTPARPTPRPAGAGSPARPTPGQG--QPKPQI 223


>sp|Q9H252|KCNH6_HUMAN Potassium voltage-gated channel subfamily H
           member 6 OS=Homo sapiens GN=KCNH6 PE=2 SV=1
          Length = 994

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 383 KVTSPNPR-PSQLRPGARPRQKGRSDQCTPKEADRSPR 273
           + TSP PR P    P A+    G  D C+PK  + SPR
Sbjct: 880 ETTSPGPRLPQGFLPPAQTPSYGDLDDCSPKHRNSSPR 917


>sp|Q06J40|PSAB_BIGNA Photosystem I P700 chlorophyll a apoprotein A2
           OS=Bigelowiella natans GN=psaB PE=3 SV=1
          Length = 735

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = +2

Query: 32  GYHIQGRQQARKLPNPDTGR**Q*ITILGFFKSGNWNEYNLNPLTRIH 175
           G HI+       LP+PD          L  F SGNW+ Y+ NP T  H
Sbjct: 205 GQHIRWNNYLSTLPHPDG---------LAPFFSGNWSAYSTNPDTFNH 243


>sp|Q7TQM5|KPRP_RAT Keratinocyte proline-rich protein OS=Rattus
           norvegicus GN=Kprp PE=2 SV=1
          Length = 699

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = -2

Query: 371 PNPRPSQLRPGARPRQKGRSDQCTPKEADRSPRPE 267
           P PRP    P   PR + R D C   E    PRPE
Sbjct: 466 PRPRPEPC-PSPEPRPRPRPDPCPSPELRPRPRPE 499


>sp|Q5XHY8|CF146_RAT Uncharacterized protein C6orf146 homolog
           OS=Rattus norvegicus PE=2 SV=2
          Length = 419

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 25  EKRLPHPRKAAGAQITQSRHGEVVTINNNTGLFQVW 132
           +  L  P +    Q+T S H    + NNN G+FQ+W
Sbjct: 54  KNHLESPAEQLVLQLTVSEHAHSRSQNNNQGVFQLW 89


>sp|Q1DQC1|PAN1_COCIM Actin cytoskeleton-regulatory complex protein
            PAN1 OS=Coccidioides immitis GN=PAN1 PE=3 SV=1
          Length = 1485

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 380  VTSPNPRPSQLRPGARPRQKGRSDQCTPKEADRS 279
            VTSP P+PS  +P   P +K R+D     EA ++
Sbjct: 996  VTSPPPKPSSKKPPPPPSRKVRTDVTESVEAKKA 1029


>sp|Q9Y794|ORC4_SCHPO Origin recognition complex subunit 4
           OS=Schizosaccharomyces pombe GN=orc4 PE=1 SV=1
          Length = 972

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 365 PRPSQLRPGARPRQKGRSDQCTPKEADRSPRPEIQ 261
           P PS LR    PR++GR  +  PK  D    P I+
Sbjct: 89  PSPSPLRLNEAPRRRGRPRKYPPKPIDEGSEPIIK 123


>sp|A7Z026|LRC68_BOVIN Leucine-rich repeat-containing protein 68
           OS=Bos taurus GN=LRRC68 PE=2 SV=1
          Length = 699

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -1

Query: 351 IKARSASPTERAERPVHTKRGGPLAPPRD---PTTSF 250
           +  R  SP ERAE PV     GP++PP     PT+ F
Sbjct: 575 VVTRVESPPERAEPPVPPAPPGPVSPPASASPPTSPF 611


>sp|Q8K4G1|LTBP4_MOUSE Latent-transforming growth factor
           beta-binding protein 4 OS=Mus musculus GN=Ltbp4 PE=2
           SV=1
          Length = 1666

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 371 PNPRP-SQLRPGARPRQKGRSDQCTPKEADRSPRPEIQ 261
           P PRP S+ RP  RPR + R    +    +  PRPE Q
Sbjct: 527 PRPRPESRPRPEPRPRPEPRPQPESQPRPESRPRPESQ 564
tr_hit_id A8NMG1
Definition tr|A8NMG1|A8NMG1_BRUMA Putative uncharacterized protein OS=Brugia malayi
Align length 42
Score (bit) 68.6
E-value 5.0e-15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945737|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_E15, 5'
         (384 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8NMG1|A8NMG1_BRUMA Putative uncharacterized protein OS=Brugi...    69   5e-15
tr|A8JJG4|A8JJG4_CHLRE Predicted protein OS=Chlamydomonas reinha...    81   3e-14
tr|A8NQF6|A8NQF6_BRUMA Putative uncharacterized protein OS=Brugi...    59   4e-12
tr|A8NHW8|A8NHW8_BRUMA Putative uncharacterized protein (Fragmen...    59   4e-12
tr|B6A8G9|B6A8G9_HELAM CHK1 checkpoint-like protein (Fragment) O...    69   1e-10
tr|Q28EK6|Q28EK6_XENTR CHK1 checkpoint homolog (S. pombe) OS=Xen...    68   2e-10
tr|B3SDC0|B3SDC0_TRIAD Predicted protein OS=Trichoplax adhaerens...    54   2e-09
tr|A2GSA9|A2GSA9_TRIVA Putative uncharacterized protein OS=Trich...    55   1e-06
tr|A2HW58|A2HW58_TRIVA Putative uncharacterized protein OS=Trich...    55   2e-06
tr|A8P6U5|A8P6U5_BRUMA Putative uncharacterized protein (Fragmen...    54   3e-06
tr|A8P366|A8P366_BRUMA Putative uncharacterized protein OS=Brugi...    54   5e-06
tr|Q3LVI1|Q3LVI1_TAROF TO71-3 (Fragment) OS=Taraxacum officinale...    53   7e-06
tr|A8DVV5|A8DVV5_NEMVE Predicted protein OS=Nematostella vectens...    52   1e-05
tr|B6MF34|B6MF34_BRAFL Putative uncharacterized protein OS=Branc...    44   0.005
tr|A8NVW9|A8NVW9_BRUMA Putative uncharacterized protein OS=Brugi...    35   0.047
tr|Q7RN92|Q7RN92_PLAYO Putative uncharacterized protein PY01929 ...    32   0.37 
tr|Q6QI94|Q6QI94_RAT LRRG00114 (LRRGT00001) OS=Rattus norvegicus...    37   0.38 
tr|A2HJV5|A2HJV5_TRIVA Putative uncharacterized protein OS=Trich...    37   0.50 
tr|Q742L3|Q742L3_MYCPA Putative uncharacterized protein OS=Mycob...    35   1.4  
tr|Q7M4B1|Q7M4B1_TRYCR Probable flagellar protein (Clone FCH-F8-...    34   4.2  
tr|B8RJH2|B8RJH2_CULTA Putative uncharacterized protein OS=Culex...    33   5.5  
tr|B0WM70|B0WM70_CULQU Putative uncharacterized protein OS=Culex...    33   5.5  
tr|A0QBI2|A0QBI2_MYCA1 Putative uncharacterized protein OS=Mycob...    33   7.2  
tr|A8PJZ3|A8PJZ3_BRUMA Putative uncharacterized protein (Fragmen...    33   9.4  
tr|B6Q8Q7|B6Q8Q7_PENMA Kinesin family protein (KipA), putative O...    33   9.4  

>tr|A8NMG1|A8NMG1_BRUMA Putative uncharacterized protein OS=Brugia
           malayi GN=Bm1_05555 PE=4 SV=1
          Length = 115

 Score = 68.6 bits (166), Expect(2) = 5e-15
 Identities = 33/42 (78%), Positives = 36/42 (85%)
 Frame = +1

Query: 1   GSIPEREPEKRLPHPRKAAGAQITQSRHGEVVTINNNTGLFQ 126
           GS PEREPEKRLPHPRKAAGAQIT S++ EVVT NN T LF+
Sbjct: 15  GSTPEREPEKRLPHPRKAAGAQITHSQNEEVVTKNNETVLFE 56



 Score = 35.4 bits (80), Expect(2) = 5e-15
 Identities = 22/49 (44%), Positives = 25/49 (51%)
 Frame = +2

Query: 122 FKSGNWNEYNLNPLTRIHWRASLXXXXXXXXXXXXXXXXXXXKKLVVGS 268
           F++G  N YNLN LTRI+ RASL                   KKLVVGS
Sbjct: 55  FEAGYRNGYNLNLLTRIYERASLVPAAAVIPALKVYIVIAAVKKLVVGS 103


>tr|A8JJG4|A8JJG4_CHLRE Predicted protein OS=Chlamydomonas
           reinhardtii GN=CHLREDRAFT_155068 PE=4 SV=1
          Length = 87

 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 31/37 (83%), Positives = 32/37 (86%)
 Frame = -3

Query: 274 APRSNYELFNCNNLNIRYWSWNYRGCWHQTCPPMDPR 164
           A   +  LFNCNNLNIRYWSWNYRGCWHQTCPPMDPR
Sbjct: 51  ADSESQTLFNCNNLNIRYWSWNYRGCWHQTCPPMDPR 87


>tr|A8NQF6|A8NQF6_BRUMA Putative uncharacterized protein OS=Brugia
           malayi GN=Bm1_07595 PE=4 SV=1
          Length = 128

 Score = 58.5 bits (140), Expect(2) = 4e-12
 Identities = 28/36 (77%), Positives = 31/36 (86%)
 Frame = +1

Query: 19  EPEKRLPHPRKAAGAQITQSRHGEVVTINNNTGLFQ 126
           EPEKRLPHPRKAAGAQIT S++ EVVT NN T LF+
Sbjct: 34  EPEKRLPHPRKAAGAQITHSQNEEVVTKNNETVLFE 69



 Score = 35.4 bits (80), Expect(2) = 4e-12
 Identities = 22/49 (44%), Positives = 25/49 (51%)
 Frame = +2

Query: 122 FKSGNWNEYNLNPLTRIHWRASLXXXXXXXXXXXXXXXXXXXKKLVVGS 268
           F++G  N YNLN LTRI+ RASL                   KKLVVGS
Sbjct: 68  FEAGYRNGYNLNLLTRIYERASLVPAAAVIPALKVYIVIAAVKKLVVGS 116


>tr|A8NHW8|A8NHW8_BRUMA Putative uncharacterized protein (Fragment)
           OS=Brugia malayi GN=Bm1_02890 PE=4 SV=1
          Length = 128

 Score = 58.5 bits (140), Expect(2) = 4e-12
 Identities = 28/36 (77%), Positives = 31/36 (86%)
 Frame = +1

Query: 19  EPEKRLPHPRKAAGAQITQSRHGEVVTINNNTGLFQ 126
           EPEKRLPHPRKAAGAQIT S++ EVVT NN T LF+
Sbjct: 34  EPEKRLPHPRKAAGAQITHSQNEEVVTKNNETVLFE 69



 Score = 35.4 bits (80), Expect(2) = 4e-12
 Identities = 22/49 (44%), Positives = 25/49 (51%)
 Frame = +2

Query: 122 FKSGNWNEYNLNPLTRIHWRASLXXXXXXXXXXXXXXXXXXXKKLVVGS 268
           F++G  N YNLN LTRI+ RASL                   KKLVVGS
Sbjct: 68  FEAGYRNGYNLNLLTRIYERASLVPAAAVIPALKVYIVIAAVKKLVVGS 116


>tr|B6A8G9|B6A8G9_HELAM CHK1 checkpoint-like protein (Fragment)
           OS=Helicoverpa armigera PE=2 SV=1
          Length = 47

 Score = 68.9 bits (167), Expect = 1e-10
 Identities = 32/33 (96%), Positives = 32/33 (96%)
 Frame = +1

Query: 1   GSIPEREPEKRLPHPRKAAGAQITQSRHGEVVT 99
           GSIPEREPEKRLPHPRKAAGAQIT SRHGEVVT
Sbjct: 15  GSIPEREPEKRLPHPRKAAGAQITHSRHGEVVT 47


>tr|Q28EK6|Q28EK6_XENTR CHK1 checkpoint homolog (S. pombe)
           OS=Xenopus tropicalis GN=chek1 PE=2 SV=1
          Length = 231

 Score = 68.2 bits (165), Expect = 2e-10
 Identities = 32/36 (88%), Positives = 33/36 (91%)
 Frame = +1

Query: 19  EPEKRLPHPRKAAGAQITQSRHGEVVTINNNTGLFQ 126
           EPEKRLPHPRKAAGAQIT SR GEVVT NNNTGLF+
Sbjct: 187 EPEKRLPHPRKAAGAQITHSRRGEVVTKNNNTGLFR 222


>tr|B3SDC0|B3SDC0_TRIAD Predicted protein OS=Trichoplax adhaerens
           GN=TRIADDRAFT_62277 PE=4 SV=1
          Length = 206

 Score = 53.5 bits (127), Expect(2) = 2e-09
 Identities = 32/73 (43%), Positives = 38/73 (52%)
 Frame = -1

Query: 333 SPTERAERPVHTKRGGPLAPPRDPTTSFLXXXXXXXXXXXXXXXXXXTRLALQWILVKGF 154
           SP E  +   ++  GGP    R+PTTSFL                  TRLALQWILVKGF
Sbjct: 120 SPQEEEQIIQYSPLGGPSDSFRNPTTSFLTATTLIYAIGAGITAAAGTRLALQWILVKGF 179

Query: 153 RLYSFQLPDLKKP 115
           +LYSF+L     P
Sbjct: 180 KLYSFRLRSQMAP 192



 Score = 31.2 bits (69), Expect(2) = 2e-09
 Identities = 14/20 (70%), Positives = 15/20 (75%)
 Frame = -3

Query: 130 RLEKAQYCYLLSLPPRVGIG 71
           R + A Y Y LSLPPRVGIG
Sbjct: 187 RSQMAPYRYFLSLPPRVGIG 206


>tr|A2GSA9|A2GSA9_TRIVA Putative uncharacterized protein
           OS=Trichomonas vaginalis G3 GN=TVAG_049350 PE=4 SV=1
          Length = 76

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 32/69 (46%), Positives = 42/69 (60%)
 Frame = -3

Query: 217 SWNYRGCWHQTCPPMDPR*GI*IVLIPITRLEKAQYCYLLSLPPRVGIG*FARLLPSLDV 38
           SWNYR CWHQT P +    G      PI   ++ Q+ + L  PP+V  G  +RLL  +D+
Sbjct: 7   SWNYRSCWHQTGPLLGF--GTVENRTPIHSTKRHQWNWSLP-PPKVSSGKVSRLLLPVDI 63

Query: 37  VAVSQAPSP 11
           VA+SQAPSP
Sbjct: 64  VAISQAPSP 72


>tr|A2HW58|A2HW58_TRIVA Putative uncharacterized protein
           OS=Trichomonas vaginalis G3 GN=TVAG_588880 PE=4 SV=1
          Length = 76

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 32/69 (46%), Positives = 42/69 (60%)
 Frame = -3

Query: 217 SWNYRGCWHQTCPPMDPR*GI*IVLIPITRLEKAQYCYLLSLPPRVGIG*FARLLPSLDV 38
           SWNYR CWHQT P +    G      PI   ++ Q+ + L  PP+V  G  +RLL  +D+
Sbjct: 7   SWNYRSCWHQTGPLLVF--GTVENRTPIHSTKRHQWNWSLP-PPKVSSGKVSRLLLPVDI 63

Query: 37  VAVSQAPSP 11
           VA+SQAPSP
Sbjct: 64  VAISQAPSP 72


>tr|A8P6U5|A8P6U5_BRUMA Putative uncharacterized protein
          (Fragment) OS=Brugia malayi GN=Bm1_17870 PE=4 SV=1
          Length = 62

 Score = 54.3 bits (129), Expect = 3e-06
 Identities = 23/24 (95%), Positives = 24/24 (100%)
 Frame = -2

Query: 74 WVICAPAAFLGCGSRFSGSLSGIE 3
          WVICAPAAFLGCGSRFSGSLSG+E
Sbjct: 1  WVICAPAAFLGCGSRFSGSLSGVE 24