DK945743 |
Clone id |
YMU02A01NGRL0010_E24 |
Library |
YMU02 |
Length |
638 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_E24. 5' end sequence. |
Accession |
DK945743 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL6Contig1 |
Sequence |
GAGCAAGGAGGATCAAGAAGAAGAAAGAGAAGAAGAAGCCATGGCTGCCGTCTCTGCTTC TACTCTCTCCGCCTCGGTGGCGGCAACTGCCCCCGCTGCTTCTCTGAAGTCGGAATTCTC TGGCGTTCAGGTGCAGGGCATCCCCTCCCTCTCTCCTAAGCTATCCGCCCGCTCCCTCAG AATCGAGGCAAGTGGTGTCAAGAAGATCTCGACCAAAACTCCCTTGGGACCTTCCGGCGA TACCAAATTCAAGGGTAACCTGGATGCCTCTGGTCGCAAAGCTAAGGGAAAGGGAGCCTA CCAATATACCAAGAAGTATGGTGCTAATGTCGATGGATACAGCCCTATCTATGTCCCAGA GGAATGGTCAACTTCTGGTGATAGCTATGCTGCAGGTCCTACTGGATTGGCTATCTGGGC AGTTACCCTCGGCGCTATCTTGTTGGGTGGTGCCCTCTTAGTGTACAACACCAGTGCCCT TGCTCAATGATTGCTTTTGTATGTTAATGAGGTGAATCCTGAATTCTGACACACTATGCG TCTTCCATGTCTCACCTATTGCCTTGTATATTCTGACAGTCATGAGAATGAAAAAGTGTA GCTCCTTGTGAATTGCAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q40163 |
Definition |
sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum |
Align length |
121 |
Score (bit) |
135.0 |
E-value |
1.0e-31 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK945743|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0010_E24, 5' (616 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloropl... 135 1e-31 sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloropl... 134 3e-31 sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloropl... 133 6e-31 sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloropl... 131 2e-30 sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloropl... 131 3e-30 sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloropl... 127 5e-29 sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloropl... 125 1e-28 sp|B2MW49|L_LATVB RNA-directed RNA polymerase OS=Latino virus (i... 32 2.0 sp|Q12NC2|THIC_SHEDO Thiamine biosynthesis protein thiC OS=Shewa... 31 4.4 sp|P00573|RPOL_BPT7 DNA-directed RNA polymerase OS=Enterobacteri... 30 9.9 sp|Q49ZE9|RL15_STAS1 50S ribosomal protein L15 OS=Staphylococcus... 30 9.9
>sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1 Length = 138
Score = 135 bits (341), Expect = 1e-31 Identities = 69/121 (57%), Positives = 81/121 (66%) Frame = +2
Query: 125 VQVQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGAYQ 304 + V+G+PSL+ S+ S ++ ASGVKK+ T P G +G + +DASGRK KGKG YQ Sbjct: 20 ISVKGLPSLTR--SSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQ 77
Query: 305 YTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALA 484 Y KYGANVDGYSPIY +EWS SGD Y G TGLAIWAVT VYNTSALA Sbjct: 78 YVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALA 137
Query: 485 Q 487 Q Sbjct: 138 Q 138
>sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1 Length = 138
Score = 134 bits (338), Expect = 3e-31 Identities = 69/119 (57%), Positives = 80/119 (67%) Frame = +2
Query: 131 VQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGAYQYT 310 V+G+PSL+ S+ S ++ ASGVKK+ T P G +G + +DASGRK KGKG YQY Sbjct: 22 VKGLPSLAR--SSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYV 79
Query: 311 KKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 487 KYGANVDGYSPIY +EWS SGD Y G TGLAIWAVT VYNTSALAQ Sbjct: 80 DKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYNTSALAQ 138
>sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1 Length = 136
Score = 133 bits (335), Expect = 6e-31 Identities = 67/119 (56%), Positives = 81/119 (68%) Frame = +2
Query: 131 VQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGAYQYT 310 V+G+PSL+ S+ S R++ASGVKK+ T P G +G + +DASGRK KGKG YQ+ Sbjct: 20 VKGLPSLAR--SSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFV 77
Query: 311 KKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 487 KYGANVDGYSPIY ++WS SGD Y G TGLAIWAVT V+NTSALAQ Sbjct: 78 DKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALAQ 136
>sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1 Length = 141
Score = 131 bits (330), Expect = 2e-30 Identities = 68/121 (56%), Positives = 79/121 (65%) Frame = +2
Query: 125 VQVQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGAYQ 304 + +G+PSL+ + S S RI ASGVKKI T P G +G + +DASGRK KG G Y+ Sbjct: 22 MSARGLPSLT-RASPSSFRIVASGVKKIKTDKPFGVNGSMDLRDGVDASGRKGKGYGVYK 80
Query: 305 YTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALA 484 + KYGANVDGYSPIY +EWS SGD Y G TGLAIWAVT VYNTSALA Sbjct: 81 FVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALA 140
Query: 485 Q 487 Q Sbjct: 141 Q 141
>sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1 Length = 140
Score = 131 bits (329), Expect = 3e-30 Identities = 68/119 (57%), Positives = 78/119 (65%) Frame = +2
Query: 131 VQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGAYQYT 310 V+G+PSLS S+ S + ASGVKKI PLG G K + +D+SGRK GKG YQ+ Sbjct: 24 VKGLPSLSR--SSASFTVRASGVKKIKVDKPLGIGGGMKLRDGVDSSGRKPTGKGVYQFV 81
Query: 311 KKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 487 KYGANVDGYSPIY EEW+ +GD YA G TGL IWAVT VYNTSALAQ Sbjct: 82 DKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLVYNTSALAQ 140
>sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1 Length = 140
Score = 127 bits (319), Expect = 5e-29 Identities = 67/118 (56%), Positives = 76/118 (64%) Frame = +2
Query: 134 QGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGAYQYTK 313 +G+PSL+ + S +I ASGVKKI T P G +G + +DASGRK KG G Y+Y Sbjct: 25 RGLPSLTR--ARPSFKIVASGVKKIKTDKPFGINGSMDLRDGVDASGRKGKGYGVYKYVD 82
Query: 314 KYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 487 KYGANVDGYSPIY EWS SGD Y G TGLAIWAVT VYNTSALAQ Sbjct: 83 KYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 140
>sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1 Length = 138
Score = 125 bits (315), Expect = 1e-28 Identities = 68/126 (53%), Positives = 76/126 (60%) Frame = +2
Query: 107 KSEFSGVQVQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAK 286 +S+ GV+ PS P SL I A KK+ T P GP G FK +DASGR AK Sbjct: 21 RSKLGGVR----PSARP-----SLVIVAKKAKKVQTAQPYGPGGGVAFKEGVDASGRVAK 71
Query: 287 GKGAYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVY 466 GKG YQ+ KYGANVDGYSPIY PEEWS SGD Y G TGL +WAVT VY Sbjct: 72 GKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGILLGGALLVY 131
Query: 467 NTSALA 484 +TSALA Sbjct: 132 STSALA 137
>sp|B2MW49|L_LATVB RNA-directed RNA polymerase OS=Latino virus (isolate Rat/Bolivia/MARU 1924/1965) GN=L PE=3 SV=1 Length = 2238
Score = 32.3 bits (72), Expect = 2.0 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 6/87 (6%) Frame = +2
Query: 125 VQVQGIPSLSPKLSARSLRIEASGVKKIST----KTPLGPSGDTKFKGNLDASGRKA--K 286 ++ + IPSL + ++ + G KKI K+ S + F G + G K Sbjct: 1591 IETEEIPSLIKSIQSKLSKNFVKGAKKILAESINKSAFQSSIASGFIGFCQSVGSKCVRT 1650
Query: 287 GKGAYQYTKKYGANVDGYSPIYVPEEW 367 G+G + Y K+ + VD Y P V W Sbjct: 1651 GEGGFYYIKELKSKVDLYCPCEVCARW 1677
>sp|Q12NC2|THIC_SHEDO Thiamine biosynthesis protein thiC OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=thiC PE=3 SV=1 Length = 686
Score = 31.2 bits (69), Expect = 4.4 Identities = 14/30 (46%), Positives = 19/30 (63%) Frame = -3
Query: 611 SQGATLFHSHDCQNIQGNR*DMEDA*CVRI 522 SQG+ L+HS D I N+ D +DA VR+ Sbjct: 650 SQGSALYHSIDSSGINDNKNDQQDASVVRV 679
>sp|P00573|RPOL_BPT7 DNA-directed RNA polymerase OS=Enterobacteria phage T7 GN=1 PE=1 SV=2 Length = 883
Score = 30.0 bits (66), Expect = 9.9 Identities = 16/44 (36%), Positives = 21/44 (47%) Frame = +2
Query: 230 PSGDTKFKGNLDASGRKAKGKGAYQYTKKYGANVDGYSPIYVPE 361 P G+ KG L + K GK Y + K +GAN G + PE Sbjct: 434 PQGNDMTKGLLTLAKGKPIGKEGYYWLKIHGANCAGVDKVPFPE 477
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NK29 |
Definition |
tr|A9NK29|A9NK29_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
129 |
Score (bit) |
142.0 |
E-value |
2.0e-32 |
Report |
|