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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945748
Clone id YMU02A01NGRL0010_F05
Library
Length 424
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_F05. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GATGGGGTGTGGCATTTAAAGCGCTCGGAAACAGGCTATTTGTGATGGGAGAATTGGATG
GTGTTGCTGCATTTTGTTGGCAGCCGGGAGCTAATCCCGCACAACCAATTTGGGAACTTC
TGTGTCGCAGGGAGAGGGGTGCAGGCAGCTTCCTCTACAACTGTGCGGTCATGACCTGCT
AAATTCTTGCTCTGAAGCAATATTCTTTTGAAAGGATTTTATGTAATCTACATGCTTCTT
GCTGTAGATGATGCTGGGTCATGTGTATGATGCATCTATCTGAGGCCCATGTTTCGAAAG
AAATTGGGCTCTGAAGTAGTAAAGTTAACGTCACTGTGGATGTGCTTTGTAAATGAGCAC
ATGGTTATTTTAAACTTAGTTTCTTTTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAGC
ATGT
■■Homology search results ■■ -
sp_hit_id Q8L736
Definition sp|Q8L736|FBK31_ARATH F-box/Kelch-repeat protein At2g02870 OS=Arabidopsis thaliana
Align length 64
Score (bit) 42.7
E-value 0.0006
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945748|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_F05, 5'
         (391 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8L736|FBK31_ARATH F-box/Kelch-repeat protein At2g02870 OS=Ar...    43   6e-04
sp|Q84M94|FBK15_ARATH F-box/Kelch-repeat protein At1g26930 OS=Ar...    43   6e-04
sp|Q9LI89|FBK70_ARATH F-box/Kelch-repeat protein At3g27150 OS=Ar...    41   0.002
sp|Q9CA63|FBK29_ARATH F-box/Kelch-repeat protein At1g74510 OS=Ar...    39   0.011
sp|O15021|MAST4_HUMAN Microtubule-associated serine/threonine-pr...    29   8.4  
sp|Q54QR1|LIMA_DICDI LIM domain-containing protein A OS=Dictyost...    29   8.4  
sp|Q6YI93|SETB2_XENLA Histone-lysine N-methyltransferase SETDB2 ...    29   8.4  

>sp|Q8L736|FBK31_ARATH F-box/Kelch-repeat protein At2g02870
           OS=Arabidopsis thaliana GN=At2g02870 PE=2 SV=2
          Length = 467

 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
 Frame = +3

Query: 3   WGVAFKALGNRLFVMG--ELDG---VAAFCWQPGANPAQPIWELLCRRERGAGSFLYNCA 167
           WG+AF+A G RL V+G  +  G   +    W P ++   P W LL R+   + +F+YNCA
Sbjct: 407 WGLAFRACGERLIVIGGPKCSGGGFIELNSWIP-SDGGPPQWTLLDRKH--SPTFVYNCA 463

Query: 168 VMTC 179
           VM C
Sbjct: 464 VMGC 467


>sp|Q84M94|FBK15_ARATH F-box/Kelch-repeat protein At1g26930
           OS=Arabidopsis thaliana GN=At1g26930 PE=2 SV=1
          Length = 421

 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
 Frame = +3

Query: 3   WGVAFKALGNRLFVMGELDG-----VAAFCWQPGANPAQPIWELLCRRERGAGSFLYNCA 167
           WG+AF+A G+R+ V+G         +    W P      P W LL +++  + +F+YNCA
Sbjct: 362 WGLAFRACGDRIIVIGGPKAPGEGFIELNSWVPSV--TTPEWHLLGKKQ--SVNFVYNCA 417

Query: 168 VMTC 179
           VM+C
Sbjct: 418 VMSC 421


>sp|Q9LI89|FBK70_ARATH F-box/Kelch-repeat protein At3g27150
           OS=Arabidopsis thaliana GN=At3g27150 PE=2 SV=1
          Length = 422

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
 Frame = +3

Query: 3   WGVAFKALGNRLFVMGELDG------VAAFCWQPGANPAQPIWELLCRRERGA--GSFLY 158
           WGVAFK+LG++L V+G   G      ++ +  +P ANPA  ++    +R  G     F+ 
Sbjct: 356 WGVAFKSLGDKLLVIGASAGPSRAETMSVYTSRPSANPANKLYWEESKRCCGVRFNHFIL 415

Query: 159 NCAVM 173
           NC VM
Sbjct: 416 NCCVM 420


>sp|Q9CA63|FBK29_ARATH F-box/Kelch-repeat protein At1g74510
           OS=Arabidopsis thaliana GN=At1g74510 PE=2 SV=1
          Length = 451

 Score = 38.5 bits (88), Expect = 0.011
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
 Frame = +3

Query: 3   WGVAFKALGNRLFVMGELDGVAAFCWQPGA----NPAQPIWELLCRRERGAGSFLYNCAV 170
           WG+AF+A G++L V+G    +     +  A       Q  W +L  +   +G+F+YNCAV
Sbjct: 391 WGMAFRACGDQLVVVGGPRAIGGGFIEINACVPSEGTQLHWRVLASKP--SGNFVYNCAV 448

Query: 171 MTC 179
           M C
Sbjct: 449 MGC 451


>sp|O15021|MAST4_HUMAN Microtubule-associated serine/threonine-protein
            kinase 4 OS=Homo sapiens GN=MAST4 PE=1 SV=3
          Length = 2626

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 154  RKLPAPLSLRHRSSQIGCAGLAPGCQQNAATPSNSP 47
            + L +P + +H SS    +G  PG + + A PS+SP
Sbjct: 2144 KDLSSPAARQHCSSPSHASGREPGAKPSTAEPSSSP 2179


>sp|Q54QR1|LIMA_DICDI LIM domain-containing protein A OS=Dictyostelium
            discoideum GN=limA PE=2 SV=1
          Length = 1183

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 101  TTNLGTSVSQGEGCRQLPLQLCGHDLLNSCSEAIFF*KDFM*STCF 238
            T  + T VS G+ C++  L++ G+ L+N   E  +  + F  S CF
Sbjct: 971  TQTITTIVSSGKNCKRCKLEIFGNTLINHLQET-YHPECFKCSNCF 1015


>sp|Q6YI93|SETB2_XENLA Histone-lysine N-methyltransferase SETDB2
           OS=Xenopus laevis GN=setdb2 PE=2 SV=1
          Length = 699

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
 Frame = -3

Query: 350 TKHIHSDVNFTTSEPNFFRNMGL--R*MHHTHDPASSTARSM*IT*NPFKRILLQSKNLA 177
           T H  S+V    + P   R+ GL    + +T  P  + +     +  P +R   ++  L 
Sbjct: 462 TSHSDSEVTVMHTNPYSMRSHGLSVHRLSNTFSPRQARSGEREFSLQPLRRPKTKTSMLQ 521

Query: 176 GHDRTVVEEAACT 138
              R ++EE ACT
Sbjct: 522 KRRRQLIEEGACT 534
tr_hit_id A7QI74
Definition tr|A7QI74|A7QI74_VITVI Chromosome chr17 scaffold_101, whole genome shotgun sequence OS=Vitis vinifera
Align length 64
Score (bit) 56.6
E-value 6.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945748|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_F05, 5'
         (391 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7QI74|A7QI74_VITVI Chromosome chr17 scaffold_101, whole geno...    57   6e-07
tr|A7PB63|A7PB63_VITVI Chromosome chr16 scaffold_10, whole genom...    55   2e-06
tr|Q10R48|Q10R48_ORYSJ Os03g0171600 protein OS=Oryza sativa subs...    53   7e-06
tr|B8LQD3|B8LQD3_PICSI Putative uncharacterized protein OS=Picea...    53   7e-06
tr|A2XD14|A2XD14_ORYSI Putative uncharacterized protein OS=Oryza...    53   7e-06
tr|Q2R1J5|Q2R1J5_ORYSJ Kelch repeat-containing F-box family prot...    52   2e-05
tr|B4F9N2|B4F9N2_MAIZE Putative uncharacterized protein OS=Zea m...    52   2e-05
tr|B4F9L7|B4F9L7_MAIZE Putative uncharacterized protein OS=Zea m...    52   2e-05
tr|A3CCR8|A3CCR8_ORYSJ Putative uncharacterized protein OS=Oryza...    52   2e-05
tr|A2ZFU1|A2ZFU1_ORYSI Putative uncharacterized protein OS=Oryza...    52   2e-05
tr|B6T5K9|B6T5K9_MAIZE Kelch motif family protein OS=Zea mays PE...    51   3e-05
tr|B6SXJ9|B6SXJ9_MAIZE Kelch motif family protein OS=Zea mays PE...    51   3e-05
tr|B4F8P8|B4F8P8_MAIZE Putative uncharacterized protein OS=Zea m...    51   3e-05
tr|A5AXW4|A5AXW4_VITVI Putative uncharacterized protein OS=Vitis...    50   4e-05
tr|Q9SC69|Q9SC69_ORYSA L1332.8 protein OS=Oryza sativa GN=l1332....    50   7e-05
tr|Q9M9S9|Q9M9S9_ARATH F14L17.10 protein (Putative uncharacteriz...    50   7e-05
tr|Q7XTU2|Q7XTU2_ORYSJ cDNA clone:J013002A05, full insert sequen...    50   7e-05
tr|Q6L3I4|Q6L3I4_SOLDE Kelch repeat-containing F-box family prot...    50   7e-05
tr|Q25AR6|Q25AR6_ORYSA H0313F03.20 protein (H0114G12.4 protein) ...    50   7e-05
tr|Q0JA26|Q0JA26_ORYSJ Os04g0619300 protein (Fragment) OS=Oryza ...    50   7e-05
tr|B8AUG2|B8AUG2_ORYSI Putative uncharacterized protein OS=Oryza...    50   7e-05
tr|A3AXH1|A3AXH1_ORYSJ Putative uncharacterized protein OS=Oryza...    50   7e-05
tr|B6SYK9|B6SYK9_MAIZE Kelch motif family protein OS=Zea mays PE...    49   2e-04
tr|A7QEG9|A7QEG9_VITVI Chromosome chr1 scaffold_84, whole genome...    45   0.002
tr|Q9FKJ0|Q9FKJ0_ARATH Emb|CAB55405.1 (At5g60570) OS=Arabidopsis...    44   0.005
tr|Q56XE5|Q56XE5_ARATH Putative uncharacterized protein At5g6057...    44   0.005
tr|Q6YUW3|Q6YUW3_ORYSJ Kelch repeat-containing F-box-like OS=Ory...    42   0.015
tr|A9SY82|A9SY82_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.015
tr|A3ABD0|A3ABD0_ORYSJ Putative uncharacterized protein OS=Oryza...    42   0.015
tr|A2X9M1|A2X9M1_ORYSI Putative uncharacterized protein OS=Oryza...    42   0.015

>tr|A7QI74|A7QI74_VITVI Chromosome chr17 scaffold_101, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00000121001
           PE=4 SV=1
          Length = 433

 Score = 56.6 bits (135), Expect = 6e-07
 Identities = 31/64 (48%), Positives = 41/64 (64%), Gaps = 5/64 (7%)
 Frame = +3

Query: 3   WGVAFKALGNRLFVMG---ELDG--VAAFCWQPGANPAQPIWELLCRRERGAGSFLYNCA 167
           WG+AF+A G+RL V+G    L G  +    W PG  P  P W+LL R++  +GSF+YNCA
Sbjct: 374 WGLAFRACGDRLIVIGGPRVLGGGIIELNSWSPGEGP--PQWDLLARKQ--SGSFVYNCA 429

Query: 168 VMTC 179
           VM C
Sbjct: 430 VMGC 433


>tr|A7PB63|A7PB63_VITVI Chromosome chr16 scaffold_10, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00013963001
           PE=4 SV=1
          Length = 461

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 30/65 (46%), Positives = 39/65 (60%), Gaps = 6/65 (9%)
 Frame = +3

Query: 3   WGVAFKALGNRLFVMG-----ELDGVAAFCWQP-GANPAQPIWELLCRRERGAGSFLYNC 164
           WG+AFKA G+ L V+G     E + +    W+P   N   P W +L  RER AG+F+YNC
Sbjct: 398 WGLAFKACGDSLLVIGGHRGPEGEVIVLHSWEPEDGNAGGPDWNVLSVRER-AGAFVYNC 456

Query: 165 AVMTC 179
           AVM C
Sbjct: 457 AVMGC 461


>tr|Q10R48|Q10R48_ORYSJ Os03g0171600 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0171600 PE=2 SV=1
          Length = 431

 Score = 53.1 bits (126), Expect = 7e-06
 Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
 Frame = +3

Query: 3   WGVAFKALGNRLFVMG----ELDG-VAAFCWQPGANPAQPIWELLCRRERGAGSFLYNCA 167
           WG+AF+A G+RL V+G     + G +    W P   P  P+W L+ RR   +G+F+YNCA
Sbjct: 372 WGLAFRACGDRLIVIGGPRTSIGGTIELNSWTPDERP--PVWNLIARRP--SGNFVYNCA 427

Query: 168 VMTC 179
           VM C
Sbjct: 428 VMGC 431


>tr|B8LQD3|B8LQD3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 432

 Score = 53.1 bits (126), Expect = 7e-06
 Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
 Frame = +3

Query: 3   WGVAFKALGNRLFVMGELDGVAAFC-----WQPGANPAQPI-WELLCRRERGAGSFLYNC 164
           WG+AFKA GN + V+G   G    C     W+P     +PI W++L  +   AG F+YNC
Sbjct: 369 WGLAFKACGNEIIVIGGQRGPEGECIVLNSWRPSPEAGRPIEWKVLAVKWH-AGVFVYNC 427

Query: 165 AVMTC 179
           AVM+C
Sbjct: 428 AVMSC 432


>tr|A2XD14|A2XD14_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_10201 PE=4 SV=1
          Length = 431

 Score = 53.1 bits (126), Expect = 7e-06
 Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
 Frame = +3

Query: 3   WGVAFKALGNRLFVMG----ELDG-VAAFCWQPGANPAQPIWELLCRRERGAGSFLYNCA 167
           WG+AF+A G+RL V+G     + G +    W P   P  P+W L+ RR   +G+F+YNCA
Sbjct: 372 WGLAFRACGDRLIVIGGPRTSIGGTIELNSWTPDERP--PVWNLIARRP--SGNFVYNCA 427

Query: 168 VMTC 179
           VM C
Sbjct: 428 VMGC 431


>tr|Q2R1J5|Q2R1J5_ORYSJ Kelch repeat-containing F-box family
           protein, putative, expressed OS=Oryza sativa subsp.
           japonica GN=Os11g0602800 PE=2 SV=1
          Length = 432

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
 Frame = +3

Query: 3   WGVAFKALGNRLFVMGELD----GVAAFC-WQPGANPAQPIWELLCRRERGAGSFLYNCA 167
           WG+AF+  G++L V+G +     GV   C W P  N  QP W+++  R   +GSF+YNCA
Sbjct: 373 WGLAFRGCGDKLIVIGGMSAPGGGVIEICSWIP--NNGQPDWKIIGSRR--SGSFVYNCA 428

Query: 168 VMTC 179
           VM C
Sbjct: 429 VMGC 432


>tr|B4F9N2|B4F9N2_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 450

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
 Frame = +3

Query: 3   WGVAFKALGNRLFVMGELDG-----VAAFCWQPGANPAQPIWELLCRRERGAGSFLYNCA 167
           WG+AFKA G+RL V+G   G     +    W P        WE+L  +ER AG F+YNCA
Sbjct: 388 WGLAFKACGDRLLVIGGHRGPRGEVILLHSWCPEGGEDGADWEVLSVKER-AGVFVYNCA 446

Query: 168 VMTC 179
           +M C
Sbjct: 447 IMGC 450


>tr|B4F9L7|B4F9L7_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 472

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
 Frame = +3

Query: 3   WGVAFKALGNRLFVMGELDG-----VAAFCWQPGANPAQPIWELLCRRERGAGSFLYNCA 167
           WG+AFKA G+RL V+G   G     +    W P        WE+L  +ER AG F+YNCA
Sbjct: 410 WGLAFKACGDRLLVIGGHRGPRGEVILLHSWCPEGGEDGADWEVLSVKER-AGVFVYNCA 468

Query: 168 VMTC 179
           +M C
Sbjct: 469 IMGC 472


>tr|A3CCR8|A3CCR8_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_033090 PE=4 SV=1
          Length = 465

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
 Frame = +3

Query: 3   WGVAFKALGNRLFVMGELD----GVAAFC-WQPGANPAQPIWELLCRRERGAGSFLYNCA 167
           WG+AF+  G++L V+G +     GV   C W P  N  QP W+++  R   +GSF+YNCA
Sbjct: 406 WGLAFRGCGDKLIVIGGMSAPGGGVIEICSWIP--NNGQPDWKIIGSRR--SGSFVYNCA 461

Query: 168 VMTC 179
           VM C
Sbjct: 462 VMGC 465


>tr|A2ZFU1|A2ZFU1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_36649 PE=4 SV=1
          Length = 432

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
 Frame = +3

Query: 3   WGVAFKALGNRLFVMGELD----GVAAFC-WQPGANPAQPIWELLCRRERGAGSFLYNCA 167
           WG+AF+  G++L V+G +     GV   C W P  N  QP W+++  R   +GSF+YNCA
Sbjct: 373 WGLAFRGCGDKLIVIGGMSAPGGGVIEICSWIP--NNGQPDWKIIGSRR--SGSFVYNCA 428

Query: 168 VMTC 179
           VM C
Sbjct: 429 VMGC 432