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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945753
Clone id YMU02A01NGRL0010_F11
Library
Length 420
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_F11. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GATTATGTTACCTACTATGCGAAGAAATCCGTTTTCCCTGCTGAAGCTTGTGAATAGCTC
GGTGGTGAAGCAGGTGAGTTTGATGGTGTTGGCCCTGATGTGAAGGGCTCTGCCTCTGCT
CCCATAGCGTCCTCTTCGTCCAACGCTGGGAGTGGGCCGGATCGGGAGTACTTGGATTAC
AAGGAAAGCAAGACTGTCTTTCCTGGATAGGCTTGCGATGACCTCCGAGGTGAATTTTGC
GAGCCTGAGTACCACACTGGTGTTTTCTCGGAGAAGGCCGCGGCCTACAAGAGAAGTCAG
GAACTGTTTGCTGTTGTTTGTTCATCTCCCTAACAACTGTTTCTTAGCCTTGCAGATTTG
GCTGATTCTCATACGATATTGCGCAGCGTTTATGCGTGCAAGCTATCTTGCCAGATCTCT
■■Homology search results ■■ -
sp_hit_id Q03200
Definition sp|Q03200|LIRP1_ORYSJ Light-regulated protein OS=Oryza sativa subsp. japonica
Align length 28
Score (bit) 44.3
E-value 0.0002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945753|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_F11, 5'
         (420 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q03200|LIRP1_ORYSJ Light-regulated protein OS=Oryza sativa su...    44   2e-04
sp|Q6G0B0|GLNE_BARQU Glutamate-ammonia-ligase adenylyltransferas...    33   0.46 
sp|P35321|SPR1A_HUMAN Cornifin-A OS=Homo sapiens GN=SPRR1A PE=1 ...    31   1.7  
sp|Q7V6E8|CHLB_PROMM Light-independent protochlorophyllide reduc...    31   2.2  
sp|Q10124|PQE1_CAEEL Putative RNA exonuclease pqe-1 OS=Caenorhab...    30   3.8  
sp|O14836|TR13B_HUMAN Tumor necrosis factor receptor superfamily...    30   4.9  
sp|Q9ERB4|CSPG2_RAT Versican core protein (Fragments) OS=Rattus ...    30   4.9  
sp|P08096|TOP2_SCHPO DNA topoisomerase 2 OS=Schizosaccharomyces ...    29   6.4  
sp|Q9WTP0|E41L1_RAT Band 4.1-like protein 1 OS=Rattus norvegicus...    29   6.4  
sp|Q9H4G0|E41L1_HUMAN Band 4.1-like protein 1 OS=Homo sapiens GN...    29   6.4  
sp|A2C7T5|CHLB_PROM3 Light-independent protochlorophyllide reduc...    29   6.4  
sp|Q32PF6|DBP_BOVIN D site-binding protein OS=Bos taurus GN=DBP ...    29   8.4  
sp|Q6G488|GLNE_BARHE Glutamate-ammonia-ligase adenylyltransferas...    29   8.6  

>sp|Q03200|LIRP1_ORYSJ Light-regulated protein OS=Oryza sativa
           subsp. japonica GN=LIR1 PE=2 SV=1
          Length = 128

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 19/28 (67%), Positives = 21/28 (75%)
 Frame = +1

Query: 160 DREYLDYKESKTVFPG*ACDDLRGEFCE 243
           DR+YL Y E  TVFP  ACDDL GEFC+
Sbjct: 99  DRDYLSYDEPTTVFPEEACDDLGGEFCK 126


>sp|Q6G0B0|GLNE_BARQU Glutamate-ammonia-ligase adenylyltransferase
           OS=Bartonella quintana GN=glnE PE=3 SV=1
          Length = 974

 Score = 33.1 bits (74), Expect = 0.46
 Identities = 20/53 (37%), Positives = 29/53 (54%)
 Frame = +1

Query: 262 VFSEKAAAYKRSQELFAVVCSSP*QLFLSLADLADSHTILRSVYACKLSCQIS 420
           V  +K A +K  +ELF  V       +L  A +AD H+I R ++ACK   QI+
Sbjct: 286 VAGDKRAGFKFLKELFPYVWRK----YLDYAAIADIHSIKRQIHACKNYGQIT 334


>sp|P35321|SPR1A_HUMAN Cornifin-A OS=Homo sapiens GN=SPRR1A PE=1
           SV=2
          Length = 89

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
 Frame = -3

Query: 325 MNKQQQTVPDFSCRPRPSPRKHQCGTQARKIHLGGHRKPIQE--RQSCFP-----CNPST 167
           MN QQQ  P   C P P P++ Q             ++P Q   ++ C P     C+P  
Sbjct: 1   MNSQQQKQP---CTPPPQPQQQQV------------KQPCQPPPQEPCIPKTKEPCHPKV 45

Query: 166 PDPAH 152
           P+P H
Sbjct: 46  PEPCH 50


>sp|Q7V6E8|CHLB_PROMM Light-independent protochlorophyllide
           reductase subunit B OS=Prochlorococcus marinus (strain
           MIT 9313) GN=chlB PE=3 SV=1
          Length = 536

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 253 GTQARKIHLGGHRKPIQERQSCFPCNPSTPDPAHS 149
           G Q+   HLGGH+   +++QS    NPST   A S
Sbjct: 445 GHQSHLGHLGGHQSQTEQQQSQAATNPSTQSNADS 479


>sp|Q10124|PQE1_CAEEL Putative RNA exonuclease pqe-1
           OS=Caenorhabditis elegans GN=pqe-1 PE=2 SV=2
          Length = 1647

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 20/75 (26%), Positives = 33/75 (44%)
 Frame = -3

Query: 331 REMNKQQQTVPDFSCRPRPSPRKHQCGTQARKIHLGGHRKPIQERQSCFPCNPSTPDPAH 152
           ++  +Q   +P+ +  P P  R           H G H+ PI   QS     P +PD  +
Sbjct: 457 QQQMRQGAGLPNMAMPPPPLMR-----------HPGPHQNPIHAMQSMQVQPPLSPDQMN 505

Query: 151 SQRWTKRTLWEQRQS 107
            Q + +R L  Q+Q+
Sbjct: 506 MQMFQQRALMMQQQA 520


>sp|O14836|TR13B_HUMAN Tumor necrosis factor receptor superfamily
           member 13B OS=Homo sapiens GN=TNFRSF13B PE=1 SV=1
          Length = 293

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 15/66 (22%)
 Frame = -3

Query: 292 SCRPRPSPRKHQC-GTQARKIHLGG----HRKPIQERQSCFP----------CNPSTPDP 158
           SC+PR  PR+     +Q   +  G       +P++    CFP            P TPDP
Sbjct: 194 SCQPRSRPRQSPAKSSQDHAMEAGSPVSTSPEPVETCSFCFPECRAPTQESAVTPGTPDP 253

Query: 157 AHSQRW 140
             + RW
Sbjct: 254 TCAGRW 259


>sp|Q9ERB4|CSPG2_RAT Versican core protein (Fragments) OS=Rattus
            norvegicus GN=Vcan PE=2 SV=2
          Length = 2738

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -2

Query: 269  EKTPVWYSGSQNSPRRSSQAYPGKTVLLSL*SKYSRSGPLPALDEEDAMG 120
            E +P     SQ+SP +++   PGKT  +    K + SGP+    ++  +G
Sbjct: 2265 ETSPTKTETSQDSPNKANDQIPGKTAGILAGIKTTESGPVVTAADDMELG 2314


>sp|P08096|TOP2_SCHPO DNA topoisomerase 2 OS=Schizosaccharomyces pombe
            GN=top2 PE=1 SV=2
          Length = 1485

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = -3

Query: 343  ETVVREMNKQQQTVPDFSCRPRPSPRKHQCGTQARKIHLGGHRKPIQERQSCFPCNPST 167
            + + REM +++Q+  DF  R +  PR    GT+  +   G       ++++     PST
Sbjct: 1207 DDIQREMLEEEQSSRDFVNRTKKKPRGKSTGTRKPRAIAGSSSSTAVKKEASSESKPST 1265


>sp|Q9WTP0|E41L1_RAT Band 4.1-like protein 1 OS=Rattus norvegicus
           GN=Epb41l1 PE=1 SV=1
          Length = 879

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 10/71 (14%)
 Frame = -3

Query: 340 TVVREMNKQQQTVP----DFSCRPRPSPRKHQCGTQARKIHLGG------HRKPIQERQS 191
           T ++E+  +Q+T P    +F  +P     KHQ      K  L        HR    ER+ 
Sbjct: 477 TKIKELKPEQETTPRHKQEFLDKPEDVLLKHQASINELKRTLKEPNSKLIHRDRDWERER 536

Query: 190 CFPCNPSTPDP 158
             P +P++P P
Sbjct: 537 RLPSSPASPSP 547


>sp|Q9H4G0|E41L1_HUMAN Band 4.1-like protein 1 OS=Homo sapiens
           GN=EPB41L1 PE=1 SV=2
          Length = 881

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 10/71 (14%)
 Frame = -3

Query: 340 TVVREMNKQQQTVP----DFSCRPRPSPRKHQCGTQARKIHLGG------HRKPIQERQS 191
           T ++E+  +Q+T P    +F  +P     KHQ      K  L        HR    ER+ 
Sbjct: 477 TKIKELKPEQETTPRHKQEFLDKPEDVLLKHQASINELKRTLKEPNSKLIHRDRDWERER 536

Query: 190 CFPCNPSTPDP 158
             P +P++P P
Sbjct: 537 RLPSSPASPSP 547
tr_hit_id A7QT69
Definition tr|A7QT69|A7QT69_VITVI Chromosome chr1 scaffold_166, whole genome shotgun sequence OS=Vitis vinifera
Align length 39
Score (bit) 68.6
E-value 2.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945753|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_F11, 5'
         (420 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7QT69|A7QT69_VITVI Chromosome chr1 scaffold_166, whole genom...    69   2e-10
tr|Q3ZDJ4|Q3ZDJ4_PICAB Light regulated protein Lir1 (Fragment) O...    65   1e-09
tr|A9NL55|A9NL55_PICSI Putative uncharacterized protein OS=Picea...    65   1e-09
tr|A9NPG3|A9NPG3_PICSI Putative uncharacterized protein OS=Picea...    65   2e-09
tr|Q3HNF6|Q3HNF6_LOLPR Light-induced protein 1-like OS=Lolium pe...    60   4e-08
tr|B6T5G1|B6T5G1_MAIZE Light-induced protein 1-like OS=Zea mays ...    59   9e-08
tr|B4FN76|B4FN76_MAIZE Putative uncharacterized protein OS=Zea m...    59   9e-08
tr|B6SZ11|B6SZ11_MAIZE Putative uncharacterized protein OS=Zea m...    59   1e-07
tr|B6SSM8|B6SSM8_MAIZE Light-induced protein 1-like OS=Zea mays ...    59   1e-07
tr|B7FGR7|B7FGR7_MEDTR Putative uncharacterized protein OS=Medic...    58   2e-07
tr|Q39636|Q39636_CUCSA CR9 protein OS=Cucumis sativus GN=CR9 PE=...    57   3e-07
tr|A8IXK8|A8IXK8_BRACM Light regulated protein-like protein OS=B...    57   3e-07
tr|B6TXS6|B6TXS6_MAIZE Light-induced protein 1-like OS=Zea mays ...    57   6e-07
tr|B0L633|B0L633_CICAR GA-like protein (Fragment) OS=Cicer ariet...    55   1e-06
tr|Q41016|Q41016_PEA GA protein OS=Pisum sativum GN=GA PE=2 SV=1       54   3e-06
tr|Q8S2S6|Q8S2S6_THEHA Light regulated protein-like protein OS=T...    54   5e-06
tr|Q84N27|Q84N27_9ROSI CCR protein OS=x Citrofortunella mitis PE...    53   9e-06
tr|A9PJL3|A9PJL3_POPJC Putative uncharacterized protein OS=Popul...    49   9e-05
tr|A9PJH2|A9PJH2_POPJC Putative uncharacterized protein OS=Popul...    49   9e-05
tr|A7PA27|A7PA27_VITVI Chromosome chr14 scaffold_9, whole genome...    48   2e-04
tr|Q96500|Q96500_ARATH Putative uncharacterized protein (A.thali...    47   5e-04
tr|Q7M1K1|Q7M1K1_CITPA Ccr protein OS=Citrus paradisi PE=4 SV=1        44   0.003
tr|Q0JRG1|Q0JRG1_ORYSJ cDNA clone:J013120E23, full insert sequen...    44   0.003
tr|A2WJN0|A2WJN0_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.003
tr|Q8RVJ1|Q8RVJ1_PINPS Putative cytokinin-repressed protein OS=P...    40   0.057
tr|A7SIP7|A7SIP7_NEMVE Predicted protein OS=Nematostella vectens...    35   2.4  
tr|Q0YG83|Q0YG83_9DELT Putative uncharacterized protein OS=Geoba...    33   5.4  
tr|Q13VH4|Q13VH4_BURXL Putative prolin-rich transmembrane protei...    33   9.2  
tr|Q9HFL3|Q9HFL3_NEUCR Putative uncharacterized protein B11E6.03...    33   9.2  
tr|Q7RW86|Q7RW86_NEUCR Predicted protein OS=Neurospora crassa GN...    33   9.2  

>tr|A7QT69|A7QT69_VITVI Chromosome chr1 scaffold_166, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00006187001
           PE=4 SV=1
          Length = 139

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 30/39 (76%), Positives = 31/39 (79%)
 Frame = +1

Query: 160 DREYLDYKESKTVFPG*ACDDLRGEFCEPEYHTGVFSEK 276
           DREYL+Y   KTVFPG ACDDL GEFCEPEY  GVF EK
Sbjct: 101 DREYLEYNSPKTVFPGEACDDLGGEFCEPEYQEGVFQEK 139


>tr|Q3ZDJ4|Q3ZDJ4_PICAB Light regulated protein Lir1 (Fragment)
           OS=Picea abies GN=LIR PE=2 SV=1
          Length = 117

 Score = 65.5 bits (158), Expect = 1e-09
 Identities = 30/43 (69%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
 Frame = +1

Query: 160 DREYLDY-KESKTVFPG*ACDDLRGEFCEPEYHTGVFSEKAAA 285
           DREY++Y  E KTVFPG ACDDL GEFCEPEY +GV+ EK  A
Sbjct: 74  DREYVEYASEQKTVFPGEACDDLGGEFCEPEYQSGVYKEKEPA 116


>tr|A9NL55|A9NL55_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 143

 Score = 65.5 bits (158), Expect = 1e-09
 Identities = 30/43 (69%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
 Frame = +1

Query: 160 DREYLDY-KESKTVFPG*ACDDLRGEFCEPEYHTGVFSEKAAA 285
           DREY++Y  E KTVFPG ACDDL GEFCEPEY +GV+ EK  A
Sbjct: 100 DREYVEYASEQKTVFPGEACDDLGGEFCEPEYQSGVYKEKEPA 142


>tr|A9NPG3|A9NPG3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 143

 Score = 64.7 bits (156), Expect = 2e-09
 Identities = 30/43 (69%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
 Frame = +1

Query: 160 DREYLDY-KESKTVFPG*ACDDLRGEFCEPEYHTGVFSEKAAA 285
           DREY++Y  E KTVFPG ACDDL GEFCEPEY +GV+ EK  A
Sbjct: 100 DREYVEYASELKTVFPGEACDDLGGEFCEPEYQSGVYKEKEPA 142


>tr|Q3HNF6|Q3HNF6_LOLPR Light-induced protein 1-like OS=Lolium
           perenne GN=LIR1 PE=2 SV=1
          Length = 136

 Score = 60.5 bits (145), Expect = 4e-08
 Identities = 27/38 (71%), Positives = 29/38 (76%)
 Frame = +1

Query: 160 DREYLDYKESKTVFPG*ACDDLRGEFCEPEYHTGVFSE 273
           +REYL Y E+KTVFPG ACDDL GEFCE  Y TGV  E
Sbjct: 99  EREYLSYDEAKTVFPGEACDDLGGEFCEAPYQTGVSKE 136


>tr|B6T5G1|B6T5G1_MAIZE Light-induced protein 1-like OS=Zea mays
           PE=2 SV=1
          Length = 138

 Score = 59.3 bits (142), Expect = 9e-08
 Identities = 28/42 (66%), Positives = 29/42 (69%)
 Frame = +1

Query: 160 DREYLDYKESKTVFPG*ACDDLRGEFCEPEYHTGVFSEKAAA 285
           DR+YL Y E KTVFPG ACDDL GEFCE  Y  GV  E A A
Sbjct: 97  DRDYLSYDEPKTVFPGEACDDLGGEFCEAPYQDGVSKELAHA 138


>tr|B4FN76|B4FN76_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 138

 Score = 59.3 bits (142), Expect = 9e-08
 Identities = 28/42 (66%), Positives = 29/42 (69%)
 Frame = +1

Query: 160 DREYLDYKESKTVFPG*ACDDLRGEFCEPEYHTGVFSEKAAA 285
           DR+YL Y E KTVFPG ACDDL GEFCE  Y  GV  E A A
Sbjct: 97  DRDYLSYDEPKTVFPGEACDDLGGEFCEAPYQDGVSKELAHA 138


>tr|B6SZ11|B6SZ11_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 125

 Score = 58.9 bits (141), Expect = 1e-07
 Identities = 28/42 (66%), Positives = 29/42 (69%)
 Frame = +1

Query: 160 DREYLDYKESKTVFPG*ACDDLRGEFCEPEYHTGVFSEKAAA 285
           DR+YL Y E KTVFPG ACDDL GEFCE  Y  GV  E A A
Sbjct: 84  DRDYLSYDEPKTVFPGEACDDLGGEFCEAPYQDGVSRELAHA 125


>tr|B6SSM8|B6SSM8_MAIZE Light-induced protein 1-like OS=Zea mays
           PE=2 SV=1
          Length = 138

 Score = 58.9 bits (141), Expect = 1e-07
 Identities = 28/42 (66%), Positives = 29/42 (69%)
 Frame = +1

Query: 160 DREYLDYKESKTVFPG*ACDDLRGEFCEPEYHTGVFSEKAAA 285
           DR+YL Y E KTVFPG ACDDL GEFCE  Y  GV  E A A
Sbjct: 97  DRDYLSYDEPKTVFPGGACDDLGGEFCEAPYQDGVSRELAHA 138


>tr|B7FGR7|B7FGR7_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 144

 Score = 58.2 bits (139), Expect = 2e-07
 Identities = 34/87 (39%), Positives = 40/87 (45%)
 Frame = +1

Query: 7   VTYYAKKSVFPXXXXXXXXXXXXXFDGVGPDVKXXXXXXXXXXXXXXXXXPDREYLDYKE 186
           V Y +  SVFP              D + P+VK                  +REYLDY E
Sbjct: 59  VDYNSAFSVFPAEACETVGGDACLAD-MNPEVKLQPEARNDTPKTAASGNIEREYLDYNE 117

Query: 187 SKTVFPG*ACDDLRGEFCEPEYHTGVF 267
            KTVF   ACDDL G FCEP+Y  GV+
Sbjct: 118 PKTVFQAEACDDLGGAFCEPDYQKGVY 144