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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945759
Clone id YMU02A01NGRL0010_F17
Library
Length 616
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_F17. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
CCAGAGCTCCAGATTAGCAGAGCAAAGGGAGAGTGATTGTACGCAGTATTCAGTATGGCC
ATCTCCATAGCCGCTTCCTCGGCAGTTGTCGCTCCTAGCTGCGCCCCCGCAGAGAGCTTG
TCAAAGAGCTTCTCTGGTCTCAAGGCCACTACCCTGTTCGCCCCCAAGAGCCCCAACCCG
CTCGCCATCTCTAATGGCAGCCGTGTGAGCGCCATGCTTGTGTGGAAGCCGTGTGACAAC
AAGAAGTTCGAGACTCTGTCCTACTTGCCGCCTTTGTCAAGTGAGCAGATTGCGAAGCAG
GTGGACTTCATGGTCCGAAAAGGCTGGACCCCTTGCATTGAGTTCGACAAAATCGGGAGC
GTGTACCGAGAGCACTTCCACGGCAGCGGCTACTACGATGGGCGGTACTGGGTGATGTGG
AAGCTGCCCATGTTTGGCTGCCAAGATGCCGCTGCTGTGCTGCGTGAAATTGCAGAGTGC
GCCAAGGAGTATCCTGAAGCCTACATCCGCGTGCTGGGCCTTGACGCTNAGAGGCAGGTG
CAGGTCTCCGGCTTCCTTGTCCAGAAGCCCTCTGTCTAAACTTTCTTAAAGCAAGCCAAT
TTTAGTTGGCATGAAT
■■Homology search results ■■ -
sp_hit_id Q40250
Definition sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa
Align length 156
Score (bit) 183.0
E-value 5.0e-46
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945759|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_F17, 5'
         (616 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai...   183   5e-46
sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai...   178   2e-44
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...   178   2e-44
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai...   177   3e-44
sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chai...   177   5e-44
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai...   176   7e-44
sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai...   176   7e-44
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch...   176   7e-44
sp|Q40004|RBS_HORVU Ribulose bisphosphate carboxylase small chai...   176   9e-44
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai...   176   1e-43
sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha...   176   1e-43
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha...   176   1e-43
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch...   175   1e-43
sp|P00871|RBS1_WHEAT Ribulose bisphosphate carboxylase small cha...   175   1e-43
sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai...   174   3e-43
sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha...   174   3e-43
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha...   174   3e-43
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch...   174   3e-43
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch...   174   4e-43
sp|P26667|RBS2_WHEAT Ribulose bisphosphate carboxylase small cha...   174   4e-43
sp|P07089|RBS_FLATR Ribulose bisphosphate carboxylase small chai...   173   6e-43
sp|Q39743|RBS1_FLAPR Ribulose bisphosphate carboxylase small cha...   173   6e-43
sp|Q39744|RBS2_FLAPR Ribulose bisphosphate carboxylase small cha...   173   7e-43
sp|P08135|RBS_RAPSA Ribulose bisphosphate carboxylase small chai...   172   1e-42
sp|O65194|RBS_MEDSA Ribulose bisphosphate carboxylase small chai...   172   1e-42
sp|P26573|RBS8_NICPL Ribulose bisphosphate carboxylase small cha...   172   1e-42
sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha...   172   1e-42
sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small cha...   172   1e-42
sp|Q02980|RBS_MALSP Ribulose bisphosphate carboxylase small chai...   172   2e-42
sp|P29684|RBS_HEVBR Ribulose bisphosphate carboxylase small chai...   172   2e-42

>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
          Length = 181

 Score =  183 bits (465), Expect = 5e-46
 Identities = 86/156 (55%), Positives = 109/156 (69%), Gaps = 5/156 (3%)
 Frame = +1

Query: 118 LSKSFSGLKATTLF--APKSPNPLAI--SNGSRVSAMLVWKPCDNKKFETLSYLPPLSSE 285
           L+  F+GLK+   F    K+ N  +   SNG RV  M VW P   KK+ETLSYLPPLS E
Sbjct: 22  LAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDE 81

Query: 286 QIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVL 462
            ++K++D+++R  W PC+EF+ + G VYREH H  GYYDGRYW MWKLPMFGC D+A V+
Sbjct: 82  ALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVM 141

Query: 463 REIAECAKEYPEAYIRVLGLDAXRQVQVSGFLVQKP 570
           +E+ EC KEYP A+IRV+G D  RQVQ   F+V KP
Sbjct: 142 KEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKP 177


>sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1
          Length = 187

 Score =  178 bits (451), Expect = 2e-44
 Identities = 84/158 (53%), Positives = 105/158 (66%), Gaps = 5/158 (3%)
 Frame = +1

Query: 127 SFSGLKATTLFAPKSPNPLAI----SNGSRVSAMLVWKPCDNKKFETLSYLPPLSSEQIA 294
           SF+GLK+   F       L I    SNG RV  MLVW P + KK+ETLSYLP LS EQ+ 
Sbjct: 25  SFNGLKSAASFPVTRKQDLDITSIASNGGRVECMLVWPPINKKKYETLSYLPDLSDEQLL 84

Query: 295 KQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREI 471
           K+++++++KGW PC+EF+ + G VYREH    GYYDGRYW MWKLPMFGC DA  VL E+
Sbjct: 85  KEIEYLLQKGWVPCLEFETEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDATQVLNEV 144

Query: 472 AECAKEYPEAYIRVLGLDAXRQVQVSGFLVQKPSV*TF 585
            E  K YP+A+IR++G D  RQVQ   F+  KP    F
Sbjct: 145 QEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEATKF 182


>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
          Length = 182

 Score =  178 bits (451), Expect = 2e-44
 Identities = 86/152 (56%), Positives = 108/152 (71%), Gaps = 5/152 (3%)
 Frame = +1

Query: 130 FSGLKATTLF--APKSPNPLA--ISNGSRVSAMLVWKPCDNKKFETLSYLPPLSSEQIAK 297
           F+ LK+T+ F    K+ N +    SNG RV  M VW P   KKFETLSYLPPLSSEQ+AK
Sbjct: 28  FTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAK 87

Query: 298 QVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIA 474
           +VD+++RK   PC+EF+ + G VYREH    GYYDGRYW MWKLPMFGC D++ VL+E+ 
Sbjct: 88  EVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELE 147

Query: 475 ECAKEYPEAYIRVLGLDAXRQVQVSGFLVQKP 570
           EC K YP A+IR++G D  RQVQ+  F+  KP
Sbjct: 148 ECKKAYPSAFIRIIGFDNKRQVQIISFIAYKP 179


>sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2
           SV=1
          Length = 178

 Score =  177 bits (450), Expect = 3e-44
 Identities = 82/148 (55%), Positives = 102/148 (68%)
 Frame = +1

Query: 127 SFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPCDNKKFETLSYLPPLSSEQIAKQVD 306
           S +    T  FA  S  P   SNG RV  M VW P   KKFETLSYLPPL+ EQ+ ++VD
Sbjct: 31  SSAAFPVTRKFADSSKLP---SNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVD 87

Query: 307 FMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAK 486
           +++R GW PCIEF K+G VYRE+ +  GYYDGRYW MWKLPMFGC D++ VL+E+ EC+K
Sbjct: 88  YLIRNGWIPCIEFCKVGFVYREYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDECSK 147

Query: 487 EYPEAYIRVLGLDAXRQVQVSGFLVQKP 570
            YP+ + R++G D  RQVQ   FL  KP
Sbjct: 148 AYPDYFNRIIGFDNTRQVQCISFLTYKP 175


>sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1
          Length = 178

 Score =  177 bits (448), Expect = 5e-44
 Identities = 84/157 (53%), Positives = 111/157 (70%), Gaps = 4/157 (2%)
 Frame = +1

Query: 118 LSKSFSGLKATTLF-APKSPNPLA--ISNGSRVSAMLVWKPCDNKKFETLSYLPPLSSEQ 288
           L+  F+GLK++  F   K  N +    SNGSRV+ M VW P   KKFETLSYLPPL+ EQ
Sbjct: 21  LATPFTGLKSSAGFPVTKKNNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQ 80

Query: 289 IAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLR 465
           + K+V++++RKGW PC+EF+ + G V+R++    GYYDGRYW MW+LP+FG  DAA VL+
Sbjct: 81  LLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVLK 140

Query: 466 EIAECAKEYPEAYIRVLGLDAXRQVQVSGFLVQKPSV 576
           E+AEC  EYPEA+IR++G D  RQVQ   F+   P V
Sbjct: 141 EVAECKAEYPEAFIRIIGFDNVRQVQCISFIASTPKV 177


>sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1
          Length = 183

 Score =  176 bits (447), Expect = 7e-44
 Identities = 84/152 (55%), Positives = 110/152 (72%), Gaps = 4/152 (2%)
 Frame = +1

Query: 130 FSGLKATTLF--APKSPNPLAI-SNGSRVSAMLVWKPCDNKKFETLSYLPPLSSEQIAKQ 300
           F+GLK+++ F    KS +  +I SNG RV  M VW P   KKFETLSYLPPLSSE +AK+
Sbjct: 30  FNGLKSSSAFPVTRKSNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKE 89

Query: 301 VDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 477
           VD+++RK W PC+EF+ + G VYRE+    GYYDGRYW MWKLPMFGC D++ VL+E+ E
Sbjct: 90  VDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEE 149

Query: 478 CAKEYPEAYIRVLGLDAXRQVQVSGFLVQKPS 573
             K YP+++IR++G D  RQVQ   F+  KP+
Sbjct: 150 AKKAYPQSFIRIIGFDNVRQVQCISFIAYKPA 181


>sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1
          Length = 178

 Score =  176 bits (447), Expect = 7e-44
 Identities = 83/151 (54%), Positives = 107/151 (70%), Gaps = 4/151 (2%)
 Frame = +1

Query: 130 FSGLKATTLF-APKSPNPLAI--SNGSRVSAMLVWKPCDNKKFETLSYLPPLSSEQIAKQ 300
           F+GLK+   F   K  N  +   SNG RV  M VW P   KK+ETLSYLPPL+  Q+AK+
Sbjct: 25  FTGLKSNAAFPTTKKANDFSTLPSNGGRVQCMKVWPPLGLKKYETLSYLPPLTETQLAKE 84

Query: 301 VDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 477
           VD+++RK W PC+EF+ + G VYRE+    GYYDGRYW MWKLPMFGC D+A V++E+AE
Sbjct: 85  VDYLLRKKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELAE 144

Query: 478 CAKEYPEAYIRVLGLDAXRQVQVSGFLVQKP 570
           C KEYP+A+IR++G D  RQVQ   F+  +P
Sbjct: 145 CKKEYPQAWIRIIGFDNVRQVQCIMFIASRP 175


>sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small chain
           1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A
           PE=1 SV=2
          Length = 180

 Score =  176 bits (447), Expect = 7e-44
 Identities = 82/152 (53%), Positives = 107/152 (70%), Gaps = 5/152 (3%)
 Frame = +1

Query: 130 FSGLKATTLFAP--KSPNPLA--ISNGSRVSAMLVWKPCDNKKFETLSYLPPLSSEQIAK 297
           F+GLK++  F    K+ N +    SNG RV+ M VW P   KKFETLSYLP L+  ++AK
Sbjct: 24  FNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPDLTDSELAK 83

Query: 298 QVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIA 474
           +VD+++R  W PC+EF+ + G VYREH +  GYYDGRYW MWKLP+FGC D+A VL+E+ 
Sbjct: 84  EVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVE 143

Query: 475 ECAKEYPEAYIRVLGLDAXRQVQVSGFLVQKP 570
           EC KEYP A+IR++G D  RQVQ   F+  KP
Sbjct: 144 ECKKEYPNAFIRIIGFDNTRQVQCISFIAYKP 175


>sp|Q40004|RBS_HORVU Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Hordeum vulgare PE=2 SV=1
          Length = 174

 Score =  176 bits (446), Expect = 9e-44
 Identities = 80/150 (53%), Positives = 102/150 (68%), Gaps = 3/150 (2%)
 Frame = +1

Query: 130 FSGLKATT---LFAPKSPNPLAISNGSRVSAMLVWKPCDNKKFETLSYLPPLSSEQIAKQ 300
           F GLK+T    +    + +  ++SNG R+  M VW     KKFETLSYLPPLS+E + KQ
Sbjct: 16  FQGLKSTAGLPVSRRSNASSASVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQ 75

Query: 301 VDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAEC 480
           VD+++R  W PC+EF K+G ++REH    GYYDGRYW MWKLPMFGC DA  VL E+ E 
Sbjct: 76  VDYLIRSKWVPCLEFSKVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEV 135

Query: 481 AKEYPEAYIRVLGLDAXRQVQVSGFLVQKP 570
            KEYP+AY+R++G D  RQVQ   F+  KP
Sbjct: 136 KKEYPDAYVRIIGFDNMRQVQCVSFIAFKP 165


>sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1
          Length = 171

 Score =  176 bits (445), Expect = 1e-43
 Identities = 84/156 (53%), Positives = 106/156 (67%), Gaps = 8/156 (5%)
 Frame = +1

Query: 127 SFSGLKATTLFAP--KSPNPLA------ISNGSRVSAMLVWKPCDNKKFETLSYLPPLSS 282
           +F+GLK+T  F    K  N  A       SNG RV  M VW P  N KFETLSYLP L+ 
Sbjct: 15  AFTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETLSYLPTLTE 74

Query: 283 EQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVL 462
           EQ+ K+V++++R  W PC+EFD  GS+ R++    GYYDGRYWVMWKLPMFGC +A+ V+
Sbjct: 75  EQLVKEVEYLLRNKWVPCLEFDLEGSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVI 134

Query: 463 REIAECAKEYPEAYIRVLGLDAXRQVQVSGFLVQKP 570
            E+ ECAK YP+A+IRV+G D  RQVQ   F+V KP
Sbjct: 135 NEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170
tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 152
Score (bit) 280.0
E-value 6.0e-74
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945759|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_F17, 5'
         (616 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...   280   6e-74
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c...   199   8e-50
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c...   196   7e-49
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c...   196   1e-48
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...   196   1e-48
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c...   196   1e-48
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c...   193   8e-48
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c...   187   3e-46
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c...   187   4e-46
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c...   187   4e-46
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c...   186   9e-46
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c...   185   2e-45
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c...   184   3e-45
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c...   184   4e-45
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c...   184   5e-45
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c...   183   6e-45
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c...   182   1e-44
tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c...   182   1e-44
tr|A9S8M9|A9S8M9_PHYPA Ribulose bisphosphate carboxylase small c...   182   1e-44
tr|A9S8M6|A9S8M6_PHYPA Ribulose bisphosphate carboxylase small c...   182   1e-44
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c...   181   2e-44
tr|A9RG04|A9RG04_PHYPA Ribulose bisphosphate carboxylase small c...   181   2e-44
tr|A9PI67|A9PI67_POPTR Ribulose bisphosphate carboxylase small c...   179   9e-44
tr|Q5I8Y4|Q5I8Y4_9FABA Ribulose bisphosphate carboxylase small c...   179   2e-43
tr|A9U377|A9U377_PHYPA Ribulose bisphosphate carboxylase small c...   178   3e-43
tr|A7Q6D7|A7Q6D7_VITVI Ribulose bisphosphate carboxylase small c...   178   3e-43
tr|Q6RWD8|Q6RWD8_CAPAN Ribulose bisphosphate carboxylase small c...   177   3e-43
tr|Q9ZWG3|Q9ZWG3_9POAL Ribulose bisphosphate carboxylase small c...   177   4e-43
tr|A7LIT5|A7LIT5_9ROSI Ribulose bisphosphate carboxylase small c...   177   6e-43
tr|A5PJI4|A5PJI4_BOVIN Putative uncharacterized protein OS=Bos t...   177   6e-43

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score =  280 bits (715), Expect = 6e-74
 Identities = 130/152 (85%), Positives = 142/152 (93%)
 Frame = +1

Query: 118 LSKSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPCDNKKFETLSYLPPLSSEQIAK 297
           LSKSFSGLKA TLFAPK  NPLAISNGSR+SAMLVWKP DNKKFETLSYLPPL+++QIAK
Sbjct: 22  LSKSFSGLKANTLFAPKCANPLAISNGSRISAMLVWKPYDNKKFETLSYLPPLTNDQIAK 81

Query: 298 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 477
           QV++MVRKGWTPCIEFD IGSVYREHFHGSGYYDGRYW+MWKLPMFGC D+ +VLREIAE
Sbjct: 82  QVEYMVRKGWTPCIEFDTIGSVYREHFHGSGYYDGRYWIMWKLPMFGCTDSGSVLREIAE 141

Query: 478 CAKEYPEAYIRVLGLDAXRQVQVSGFLVQKPS 573
           CAKEYP A+IRVLG DA RQVQV+GFLV+KPS
Sbjct: 142 CAKEYPTAFIRVLGFDAKRQVQVAGFLVKKPS 173


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87740 PE=3 SV=1
          Length = 179

 Score =  199 bits (507), Expect = 8e-50
 Identities = 93/153 (60%), Positives = 114/153 (74%), Gaps = 3/153 (1%)
 Frame = +1

Query: 124 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPCDNKKFETLSYLPPLSSEQIAKQV 303
           K FSGLK+TTLFA K+    ++ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 27  KQFSGLKSTTLFASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 304 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 474
           DFM+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D+A VLREI 
Sbjct: 87  DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQ 146

Query: 475 ECAKEYPEAYIRVLGLDAXRQVQVSGFLVQKPS 573
           EC + +P  ++RVLG D+ +QVQ+ GFLV +P+
Sbjct: 147 ECKQSFPSCWVRVLGFDSKKQVQICGFLVARPN 179


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87752 PE=3 SV=1
          Length = 179

 Score =  196 bits (499), Expect = 7e-49
 Identities = 92/153 (60%), Positives = 113/153 (73%), Gaps = 3/153 (1%)
 Frame = +1

Query: 124 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPCDNKKFETLSYLPPLSSEQIAKQV 303
           K FSGLK+TTL A K+    ++ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 27  KQFSGLKSTTLSASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 304 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 474
           DFM+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D+A VLREI 
Sbjct: 87  DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQ 146

Query: 475 ECAKEYPEAYIRVLGLDAXRQVQVSGFLVQKPS 573
           EC + +P  ++RVLG D+ +QVQ+ GFLV +P+
Sbjct: 147 ECKQSFPSCWVRVLGFDSKKQVQICGFLVARPN 179


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
          Length = 214

 Score =  196 bits (497), Expect = 1e-48
 Identities = 89/153 (58%), Positives = 114/153 (74%), Gaps = 3/153 (1%)
 Frame = +1

Query: 124 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPCDNKKFETLSYLPPLSSEQIAKQV 303
           K+FSGLK+ TLF+ K+    ++ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 62  KAFSGLKSATLFSGKTQKLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 121

Query: 304 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 474
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 122 DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 181

Query: 475 ECAKEYPEAYIRVLGLDAXRQVQVSGFLVQKPS 573
           EC  ++P  ++RVLG D+ +QVQ+ GFLV +P+
Sbjct: 182 ECKSQFPSCWVRVLGFDSKKQVQICGFLVSRPN 214


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
           PE=2 SV=1
          Length = 184

 Score =  196 bits (497), Expect = 1e-48
 Identities = 90/153 (58%), Positives = 112/153 (73%), Gaps = 3/153 (1%)
 Frame = +1

Query: 124 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPCDNKKFETLSYLPPLSSEQIAKQV 303
           K+FSGLK+ TLF  KS    ++ NGSRV  M VW P    KFET SYLPPLS +QIA+QV
Sbjct: 32  KAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLSDDQIARQV 91

Query: 304 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 474
           D+M+++   PCIEFD +G+V R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 92  DYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 475 ECAKEYPEAYIRVLGLDAXRQVQVSGFLVQKPS 573
           EC   YP  ++RVLG D+ +QVQ+ GFLV +P+
Sbjct: 152 ECKTSYPSCWVRVLGFDSKKQVQICGFLVARPN 184


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_221004 PE=3 SV=1
          Length = 184

 Score =  196 bits (497), Expect = 1e-48
 Identities = 90/153 (58%), Positives = 113/153 (73%), Gaps = 3/153 (1%)
 Frame = +1

Query: 124 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPCDNKKFETLSYLPPLSSEQIAKQV 303
           K+FSGLK  TLF+ K+    A+ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 32  KAFSGLKPATLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 91

Query: 304 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 474
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 92  DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 475 ECAKEYPEAYIRVLGLDAXRQVQVSGFLVQKPS 573
           EC  ++P  ++RVLG D+ +QVQ+ GFLV +P+
Sbjct: 152 ECKSQFPSCWVRVLGFDSKKQVQICGFLVSRPN 184


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_225236 PE=3 SV=1
          Length = 183

 Score =  193 bits (490), Expect = 8e-48
 Identities = 87/153 (56%), Positives = 114/153 (74%), Gaps = 3/153 (1%)
 Frame = +1

Query: 124 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPCDNKKFETLSYLPPLSSEQIAKQV 303
           K+FSGLK+ TLF+ ++    ++ NGSRV  M VW P    KFET SYLPPL+ ++IAKQV
Sbjct: 31  KAFSGLKSATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDEIAKQV 90

Query: 304 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 474
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 91  DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 150

Query: 475 ECAKEYPEAYIRVLGLDAXRQVQVSGFLVQKPS 573
           EC  ++P  ++RVLG D+ +QVQ+ GFLV +P+
Sbjct: 151 ECKTQFPSCWVRVLGFDSKKQVQICGFLVSRPN 183


>tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_115069 PE=3 SV=1
          Length = 181

 Score =  187 bits (476), Expect = 3e-46
 Identities = 85/150 (56%), Positives = 108/150 (72%)
 Frame = +1

Query: 124 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPCDNKKFETLSYLPPLSSEQIAKQV 303
           K+FSGLK+ T+F+ K+ N  ++ NGSRV  M VW P    KFET SYLPPLS + IAKQV
Sbjct: 32  KAFSGLKSATVFSGKAQNSSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 304 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECA 483
           ++M+++   PC+EFD    V R +    GYYDGRYW MWKLPMFGCQD+A VLREI EC 
Sbjct: 92  EYMIQQKLIPCLEFDNANGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECK 151

Query: 484 KEYPEAYIRVLGLDAXRQVQVSGFLVQKPS 573
           K +P  ++RVLG D  +QVQ+ GFLV +P+
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQICGFLVARPN 181


>tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_146969 PE=3 SV=1
          Length = 181

 Score =  187 bits (475), Expect = 4e-46
 Identities = 86/150 (57%), Positives = 108/150 (72%)
 Frame = +1

Query: 124 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPCDNKKFETLSYLPPLSSEQIAKQV 303
           K+FSGLK++TLF+ K+ +  ++ NGSRV  M VW P    KFET SYLPPLS + IAKQV
Sbjct: 32  KAFSGLKSSTLFSSKAQSLSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 304 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECA 483
           D+M+++   PC+EFD    V R +    GYYDGRYW MWKLPMFGCQD A VLREI EC 
Sbjct: 92  DYMIQQKLIPCLEFDNADGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDPAQVLREIEECK 151

Query: 484 KEYPEAYIRVLGLDAXRQVQVSGFLVQKPS 573
           K +P  ++RVLG D  +QVQ+ GFLV +P+
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQICGFLVARPN 181


>tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_123666 PE=3 SV=1
          Length = 181

 Score =  187 bits (475), Expect = 4e-46
 Identities = 86/150 (57%), Positives = 109/150 (72%)
 Frame = +1

Query: 124 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPCDNKKFETLSYLPPLSSEQIAKQV 303
           K+FSGLK+ TLF+ +S    ++ NGSRV+ M VW P    KFET SYLPPLS + IAKQV
Sbjct: 32  KAFSGLKSATLFSSQSQQLSSVQNGSRVNCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 304 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECA 483
           ++M+++   PC+EFD    V RE+    GYYDGRYW MWKLPMFGCQD+A VLREI EC 
Sbjct: 92  EYMIQQKLIPCLEFDNSKGVTRENNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECK 151

Query: 484 KEYPEAYIRVLGLDAXRQVQVSGFLVQKPS 573
           K +P  ++RVLG D  +QVQ+ GFLV +P+
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQICGFLVARPN 181