NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945761
Clone id YMU02A01NGRL0010_F19
Library
Length 524
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_F19. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GAAGCAGTGGTATCAACGCAGAGTGGCCATTACGGCCGGGAAGCAGTGGTATCAACGCAG
AGTGGCCATTACGGCCGGGAATCCAACTACCTCTGGAGATAGTAGGACGTTTGGGCAATT
GCCCATGGAAAATATTGTGGGTAGAGTTGTTTATGCATGTCGCTCCTCTGATGACCATGC
ACATGTGATGAACAGTGAGGAGGCTATGCGGGAAGATTCACCCATCTTGGCAATCGAGCT
CGATGTGAACGAATTGTCACAACATGACAAGCAATAAAGGACGAGCTCTGGATCAATGAT
GTTCGCTCTCAGTCCACAATAGGATGAAACTTCTTGTACGTGGAGGTGATTTACTATAAT
TAAGCTCTAGGACAAGAGCATGGATTCTCCAAAAAGGTTTGGAGAGCAATAGGGTGTTGA
AATCAAAACAAAGTTGGTTGCAGAAAGGATAGTGCCCAGTGTGTGTAAATACAAGACAAA
GATCTCTTTTGTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id O04348
Definition sp|O04348|TPP1_ARATH Thylakoidal processing peptidase 1, chloroplastic OS=Arabidopsis thaliana
Align length 25
Score (bit) 30.4
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945761|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_F19, 5'
         (416 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O04348|TPP1_ARATH Thylakoidal processing peptidase 1, chlorop...    30   2.9  
sp|A8I5S8|ACYP_AZOC5 Acylphosphatase OS=Azorhizobium caulinodans...    30   3.8  
sp|A0RQ72|KAD_CAMFF Adenylate kinase OS=Campylobacter fetus subs...    30   4.9  
sp|Q8H0W1|PLSP1_ARATH Chloroplast processing peptidase OS=Arabid...    29   6.4  
sp|Q9Z282|GP132_MOUSE Probable G-protein coupled receptor 132 OS...    29   8.4  
sp|P36120|DBP7_YEAST ATP-dependent RNA helicase DBP7 OS=Saccharo...    29   8.4  
sp|A6ZZY8|DBP7_YEAS7 ATP-dependent RNA helicase DBP7 OS=Saccharo...    29   8.4  

>sp|O04348|TPP1_ARATH Thylakoidal processing peptidase 1,
           chloroplastic OS=Arabidopsis thaliana GN=TPP1 PE=2 SV=2
          Length = 340

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +1

Query: 1   NPTTSGDSRTFGQLPMENIVGRVVY 75
           N   S DS  +G LP+ENIVGR V+
Sbjct: 290 NRNKSFDSHNWGPLPIENIVGRSVF 314


>sp|A8I5S8|ACYP_AZOC5 Acylphosphatase OS=Azorhizobium caulinodans
           (strain ATCC 43989 / DSM 5975 / ORS 571) GN=acyP PE=3
           SV=1
          Length = 93

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 58  VGRVVYACRSSDDHAHVMNSEEAMREDSP 144
           V  ++ ACRS   HAHV   EEA+ E  P
Sbjct: 54  VAAMLEACRSGPAHAHVERIEEALAEAPP 82


>sp|A0RQ72|KAD_CAMFF Adenylate kinase OS=Campylobacter fetus subsp.
           fetus (strain 82-40) GN=adk PE=3 SV=1
          Length = 191

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 14/59 (23%)
 Frame = +1

Query: 40  LPMENIVGRVVYACRSSDDHAHVMN----SEEAMREDSPILA----------IELDVNE 174
           +P+E +V  ++ A RSSD +  +++    SEE MRE   +LA          IE+DV+E
Sbjct: 62  VPLEVVVNTIISAIRSSDKNYILIDGYPRSEEQMRELDRVLASQSEVKLDGVIEVDVSE 120


>sp|Q8H0W1|PLSP1_ARATH Chloroplast processing peptidase
           OS=Arabidopsis thaliana GN=PLSP1 PE=2 SV=2
          Length = 291

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 1   NPTTSGDSRTFGQLPMENIVGRVVY 75
           N   S DS  +G LP++NI+GR V+
Sbjct: 245 NRNNSYDSHVWGPLPLKNIIGRSVF 269


>sp|Q9Z282|GP132_MOUSE Probable G-protein coupled receptor 132
           OS=Mus musculus GN=Gpr132 PE=1 SV=1
          Length = 382

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 13/85 (15%)
 Frame = -1

Query: 254 EVSSYCGLRANIIDPELVLYCLSCCDNSFTSSSIAKMG------ESSRI-------ASSL 114
           ++ + C   + +    +V  CLS   NS     I  +G      E SRI       ++  
Sbjct: 273 DMDAVCAFESRLYTVSMVFLCLSTV-NSVADPIIYVLGTDHSRQEVSRIHTGWKKWSTKT 331

Query: 113 FITCAWSSEERHA*TTLPTIFSMGN 39
           ++TC+  SEE H  T L   ++  N
Sbjct: 332 YVTCSKDSEETHLPTELSNTYTFPN 356


>sp|P36120|DBP7_YEAST ATP-dependent RNA helicase DBP7
           OS=Saccharomyces cerevisiae GN=DBP7 PE=1 SV=1
          Length = 742

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -1

Query: 230 RANIIDPELVLYCLSCCDNSFTSSSIAKMGESSRIASSLFITCAWSSE 87
           R  I+ P+L L  L+   N+ T   IA   +S  + + +F++C+ S E
Sbjct: 393 RITIVPPKLRLVTLAATLNNITKDFIASGQQSKTLRTIVFVSCSDSVE 440


>sp|A6ZZY8|DBP7_YEAS7 ATP-dependent RNA helicase DBP7
           OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP7 PE=3
           SV=1
          Length = 742

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -1

Query: 230 RANIIDPELVLYCLSCCDNSFTSSSIAKMGESSRIASSLFITCAWSSE 87
           R  I+ P+L L  L+   N+ T   IA   +S  + + +F++C+ S E
Sbjct: 393 RITIVPPKLRLVTLAATLNNITKDFIASGQQSKTLRTIVFVSCSDSVE 440
tr_hit_id A9S4D6
Definition tr|A9S4D6|A9S4D6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 60
Score (bit) 76.6
E-value 6.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945761|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_F19, 5'
         (416 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9S4D6|A9S4D6_PHYPA Predicted protein OS=Physcomitrella paten...    77   6e-13
tr|A9SEI7|A9SEI7_PHYPA Predicted protein (Fragment) OS=Physcomit...    74   3e-12
tr|Q7XTB4|Q7XTB4_ORYSJ cDNA clone:006-205-A03, full insert seque...    72   1e-11
tr|Q01N45|Q01N45_ORYSA OSIGBa0123D13.4 protein OS=Oryza sativa G...    72   1e-11
tr|A2XPI9|A2XPI9_ORYSI Putative uncharacterized protein OS=Oryza...    72   1e-11
tr|Q8W476|Q8W476_ARATH Putative uncharacterized protein At1g0620...    71   2e-11
tr|A7Q1S5|A7Q1S5_VITVI Chromosome chr7 scaffold_44, whole genome...    70   5e-11
tr|B6T4I0|B6T4I0_MAIZE Putative uncharacterized protein OS=Zea m...    69   2e-10
tr|Q84VZ6|Q84VZ6_ARATH At2g31140 (Putative uncharacterized prote...    67   3e-10
tr|B4FFD7|B4FFD7_MAIZE Putative uncharacterized protein OS=Zea m...    67   6e-10
tr|B7FH08|B7FH08_MEDTR Putative uncharacterized protein OS=Medic...    66   8e-10
tr|Q9LNC7|Q9LNC7_ARATH F9P14.6 protein OS=Arabidopsis thaliana G...    59   9e-08
tr|Q00YZ7|Q00YZ7_OSTTA Mitochondrial inner membrane protease, su...    45   0.001
tr|A8JBK8|A8JBK8_CHLRE Predicted protein OS=Chlamydomonas reinha...    44   0.005
tr|A4S4P3|A4S4P3_OSTLU Predicted protein OS=Ostreococcus lucimar...    42   0.012
tr|O82270|O82270_ARATH Putative uncharacterized protein At2g3114...    38   0.22 
tr|Q684E7|Q684E7_9VIRU Putative uncharacterized protein OS=Sulfo...    33   5.4  
tr|A9NV99|A9NV99_PICSI Putative uncharacterized protein OS=Picea...    33   5.4  
tr|A3B931|A3B931_ORYSJ Putative uncharacterized protein OS=Oryza...    33   7.1  
tr|Q4WMA5|Q4WMA5_ASPFU Ubiquitin-protein ligase (Asi3), putative...    33   7.1  
tr|B0Y8A2|B0Y8A2_ASPFC Ubiquitin-protein ligase (Asi3), putative...    33   7.1  
tr|Q2NH68|Q2NH68_METST Predicted phosphohydrolase OS=Methanospha...    33   9.2  

>tr|A9S4D6|A9S4D6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_208572 PE=4 SV=1
          Length = 203

 Score = 76.6 bits (187), Expect = 6e-13
 Identities = 35/60 (58%), Positives = 45/60 (75%)
 Frame = +1

Query: 1   NPTTSGDSRTFGQLPMENIVGRVVYACRSSDDHAHVMNSEEAMREDSPILAIELDVNELS 180
           +P  S DSR+FG LP+ NIVGR +Y  RS  DH  V+NS++AM  DSP+LA+ELDV EL+
Sbjct: 141 SPKESRDSRSFGPLPLSNIVGRAIYGTRSPVDHGFVVNSDDAMHADSPVLAVELDVEELT 200


>tr|A9SEI7|A9SEI7_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_128504 PE=4 SV=1
          Length = 178

 Score = 74.3 bits (181), Expect = 3e-12
 Identities = 32/59 (54%), Positives = 45/59 (76%)
 Frame = +1

Query: 1   NPTTSGDSRTFGQLPMENIVGRVVYACRSSDDHAHVMNSEEAMREDSPILAIELDVNEL 177
           +P  S DSR+FG LP+ NI+GR +Y  RS+ DH  V+NS++AM  DSP+LA+ELDV ++
Sbjct: 116 SPKESRDSRSFGPLPLSNIIGRAIYGIRSAVDHGFVVNSDDAMHVDSPVLAVELDVEDM 174


>tr|Q7XTB4|Q7XTB4_ORYSJ cDNA clone:006-205-A03, full insert sequence
           OS=Oryza sativa subsp. japonica GN=OSJNBa0068L06.9 PE=2
           SV=2
          Length = 206

 Score = 72.0 bits (175), Expect = 1e-11
 Identities = 32/63 (50%), Positives = 48/63 (76%)
 Frame = +1

Query: 4   PTTSGDSRTFGQLPMENIVGRVVYACRSSDDHAHVMNSEEAMREDSPILAIELDVNELSQ 183
           P  + DSR FG +PM +I+GRV+Y+ R++ DH  V NS  AM +DSP+LA+ELDV E+++
Sbjct: 143 PKEARDSRLFGPVPMTDILGRVIYSLRTAVDHGPVENSRMAMNQDSPVLAVELDVEEMAK 202

Query: 184 HDK 192
           ++K
Sbjct: 203 NNK 205


>tr|Q01N45|Q01N45_ORYSA OSIGBa0123D13.4 protein OS=Oryza sativa
           GN=OSIGBa0123D13.4 PE=4 SV=1
          Length = 206

 Score = 72.0 bits (175), Expect = 1e-11
 Identities = 32/63 (50%), Positives = 48/63 (76%)
 Frame = +1

Query: 4   PTTSGDSRTFGQLPMENIVGRVVYACRSSDDHAHVMNSEEAMREDSPILAIELDVNELSQ 183
           P  + DSR FG +PM +I+GRV+Y+ R++ DH  V NS  AM +DSP+LA+ELDV E+++
Sbjct: 143 PKEARDSRLFGPVPMTDILGRVIYSLRTAVDHGPVENSRMAMNQDSPVLAVELDVEEMAK 202

Query: 184 HDK 192
           ++K
Sbjct: 203 NNK 205


>tr|A2XPI9|A2XPI9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_14504 PE=4 SV=1
          Length = 206

 Score = 72.0 bits (175), Expect = 1e-11
 Identities = 32/63 (50%), Positives = 48/63 (76%)
 Frame = +1

Query: 4   PTTSGDSRTFGQLPMENIVGRVVYACRSSDDHAHVMNSEEAMREDSPILAIELDVNELSQ 183
           P  + DSR FG +PM +I+GRV+Y+ R++ DH  V NS  AM +DSP+LA+ELDV E+++
Sbjct: 143 PKEARDSRLFGPVPMTDILGRVIYSLRTAVDHGPVENSRMAMNQDSPVLAVELDVEEMAK 202

Query: 184 HDK 192
           ++K
Sbjct: 203 NNK 205


>tr|Q8W476|Q8W476_ARATH Putative uncharacterized protein At1g06200;
           F9P14.6 (Putative uncharacterized protein At1g06200)
           OS=Arabidopsis thaliana GN=At1g06200/ F9P14.6 PE=2 SV=1
          Length = 206

 Score = 71.2 bits (173), Expect = 2e-11
 Identities = 35/58 (60%), Positives = 44/58 (75%)
 Frame = +1

Query: 19  DSRTFGQLPMENIVGRVVYACRSSDDHAHVMNSEEAMREDSPILAIELDVNELSQHDK 192
           DSRTFG + M +IVGR +Y  R++ DH  V NSE AM EDSPILA+ELDV+EL++  K
Sbjct: 147 DSRTFGPISMADIVGRAIYCLRTAVDHGPVSNSEFAMDEDSPILAVELDVDELAKGHK 204


>tr|A7Q1S5|A7Q1S5_VITVI Chromosome chr7 scaffold_44, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00028579001
           PE=4 SV=1
          Length = 77

 Score = 70.1 bits (170), Expect = 5e-11
 Identities = 31/60 (51%), Positives = 45/60 (75%)
 Frame = +1

Query: 13  SGDSRTFGQLPMENIVGRVVYACRSSDDHAHVMNSEEAMREDSPILAIELDVNELSQHDK 192
           + DSR FG +PM +IVGRV+Y  R++ DH  V NS  +MR+D+P+L IELDV+E+++  K
Sbjct: 17  ANDSRIFGPVPMSDIVGRVIYCLRTAVDHGRVQNSHFSMRKDTPVLEIELDVDEMARRHK 76


>tr|B6T4I0|B6T4I0_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 207

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 31/63 (49%), Positives = 47/63 (74%)
 Frame = +1

Query: 4   PTTSGDSRTFGQLPMENIVGRVVYACRSSDDHAHVMNSEEAMREDSPILAIELDVNELSQ 183
           P  + DSR FG +PM +I+GRV+Y+ R++ DH  V NS  AM++D P+LA+ELDV E+++
Sbjct: 144 PKEARDSRLFGPVPMTDILGRVIYSLRTAVDHGLVENSGMAMKQDGPVLAVELDVEEMAK 203

Query: 184 HDK 192
           + K
Sbjct: 204 NIK 206


>tr|Q84VZ6|Q84VZ6_ARATH At2g31140 (Putative uncharacterized protein
           At2g31140) OS=Arabidopsis thaliana GN=At2g31140 PE=2
           SV=1
          Length = 205

 Score = 67.4 bits (163), Expect = 3e-10
 Identities = 31/58 (53%), Positives = 44/58 (75%)
 Frame = +1

Query: 19  DSRTFGQLPMENIVGRVVYACRSSDDHAHVMNSEEAMREDSPILAIELDVNELSQHDK 192
           DSRTFG +   +IVGR +Y  R++ DH  V NS+ AM +DSPILA+ELDV+E++++ K
Sbjct: 147 DSRTFGPVSTADIVGRAIYCLRTAVDHGPVRNSQTAMGQDSPILAVELDVDEMAKNHK 204


>tr|B4FFD7|B4FFD7_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 206

 Score = 66.6 bits (161), Expect = 6e-10
 Identities = 31/63 (49%), Positives = 46/63 (73%)
 Frame = +1

Query: 4   PTTSGDSRTFGQLPMENIVGRVVYACRSSDDHAHVMNSEEAMREDSPILAIELDVNELSQ 183
           P  + DSR FG +PM +I+GRV+Y+ R++ DH  V NS  A + D P+LA+ELDV EL++
Sbjct: 143 PKEARDSRLFGPVPMTDILGRVIYSLRTAVDHGLVENSGMATKLDGPVLAVELDVEELAK 202

Query: 184 HDK 192
           ++K
Sbjct: 203 NNK 205