DK945779
Clone id YMU02A01NGRL0010_G16
Library
Length 261
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_G16. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
GCAAGCTGGGCCTTAAGGTCAACCAGAACACCGACTGCACCAAGGCCTGTCTGCCCAAGC
CGAGATGCACTTAGGCCGGTGGAATCTTAATCTGCCATCCCGTTTTTTTGCCTTTCCTGT
CTATTTTCAACTGATCTTTAGTTTGTACGTTCCTTGCAGTAAGCTTAATTAAGTCTGTAT
CCACGTCCTTGTAACTTTGGTGATGAATAGTTTCGGAAATTGGTCAGGTTATCAAATATG
CACCTTTTCATTGTTATTGGC
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945779|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_G16, 5'
(261 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done

***** No hits found ******


tr_hit_id B7C3C6
Definition tr|B7C3C6|B7C3C6_9FIRM Putative uncharacterized protein OS=Roseburia intestinalis L1-82
Align length 47
Score (bit) 36.2
E-value 0.84
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945779|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_G16, 5'
(261 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B7C3C6|B7C3C6_9FIRM Putative uncharacterized protein OS=Roseb... 36 0.84

>tr|B7C3C6|B7C3C6_9FIRM Putative uncharacterized protein
OS=Roseburia intestinalis L1-82 GN=ROSINTL182_03524 PE=4
SV=1
Length = 387

Score = 36.2 bits (82), Expect = 0.84
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = -2

Query: 161 YCKERTN*RSVENRQERQKNGMAD*DSTGLSASRLGQTGLGAVGVLV 21
+C E N ++ E+QK A T +S +LG GLGA+GVLV
Sbjct: 107 WCLENQNDENIAKTAEKQKKNFA---GTEISGKKLGVIGLGAIGVLV 150