NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945783
Clone id YMU02A01NGRL0010_G21
Library
Length 301
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_G21. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCCAAGAGTGCAGTGTGCTCAACAGTAAGAGTACGACTTATGAAAGTCCAAGTGGGATTG
AAATTACATTTAAGTAGTTCTCCCCCCTCAACTGGTGTGAGGAACAGGTTTCTTTTAATA
GCTTGTCTTGCAGCGAATACTGCCTTGGATACATCCCATGGACATAACTGATGCTCATCA
CTCATCTTTAGACTAGATGGTGTGCCGTTAGGTTTTGAAGATGTGCTGGTATAAGATTTT
TGGGCGTGTATTGTAATTTGGGTACCATACTGTTTTATCATTTAAAAAGAACTTCTGATT
G
■■Homology search results ■■ -
sp_hit_id Q7ZTY4
Definition sp|Q7ZTY4|RBBP7_DANRE Histone-binding protein RBBP7 OS=Danio rerio
Align length 34
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945783|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_G21, 5'
         (301 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7ZTY4|RBBP7_DANRE Histone-binding protein RBBP7 OS=Danio rer...    31   2.2  
sp|Q6INH0|RBP4B_XENLA Histone-binding protein RBBP4-B OS=Xenopus...    30   3.8  
sp|O93377|RBP4A_XENLA Histone-binding protein RBBP4-A OS=Xenopus...    30   3.8  
sp|Q5M7K4|RBBP4_XENTR Histone-binding protein RBBP4 OS=Xenopus t...    30   3.8  
sp|P24996|NU2M_PISOC NADH-ubiquinone oxidoreductase chain 2 OS=P...    30   4.9  
sp|Q5RF92|RBBP4_PONAB Histone-binding protein RBBP4 OS=Pongo abe...    29   6.5  
sp|Q60972|RBBP4_MOUSE Histone-binding protein RBBP4 OS=Mus muscu...    29   6.5  
sp|Q09028|RBBP4_HUMAN Histone-binding protein RBBP4 OS=Homo sapi...    29   6.5  
sp|Q9W7I5|RBBP4_CHICK Histone-binding protein RBBP4 OS=Gallus ga...    29   6.5  
sp|Q3MHL3|RBBP4_BOVIN Histone-binding protein RBBP4 OS=Bos tauru...    29   6.5  
sp|Q24572|CAF1_DROME Probable histone-binding protein Caf1 OS=Dr...    29   6.5  
sp|Q6P3H7|RBBP4_DANRE Histone-binding protein RBBP4 OS=Danio rer...    29   8.4  
sp|Q3V0A6|CB078_MOUSE Uncharacterized protein C2orf78 homolog OS...    29   8.4  

>sp|Q7ZTY4|RBBP7_DANRE Histone-binding protein RBBP7 OS=Danio rerio
           GN=rbbp7 PE=2 SV=1
          Length = 426

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 242 QKSYTSTSSKPNGTPSSLKMSDEHQLCPWDVSKA 141
           QK     S  PN + + L  SD+H +C WD+S A
Sbjct: 177 QKEGYGLSWNPNLSGNLLSASDDHTICLWDISGA 210


>sp|Q6INH0|RBP4B_XENLA Histone-binding protein RBBP4-B OS=Xenopus
           laevis GN=rbbp4-B PE=1 SV=3
          Length = 425

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 242 QKSYTSTSSKPNGTPSSLKMSDEHQLCPWDVS 147
           QK     S  PN + + L  SD+H +C WD+S
Sbjct: 177 QKEGYGLSWNPNLSGNLLSASDDHTICLWDIS 208


>sp|O93377|RBP4A_XENLA Histone-binding protein RBBP4-A OS=Xenopus
           laevis GN=rbbp4-A PE=1 SV=3
          Length = 425

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 242 QKSYTSTSSKPNGTPSSLKMSDEHQLCPWDVS 147
           QK     S  PN + + L  SD+H +C WD+S
Sbjct: 177 QKEGYGLSWNPNLSGNLLSASDDHTICLWDIS 208


>sp|Q5M7K4|RBBP4_XENTR Histone-binding protein RBBP4 OS=Xenopus
           tropicalis GN=rbbp4 PE=2 SV=3
          Length = 425

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 242 QKSYTSTSSKPNGTPSSLKMSDEHQLCPWDVS 147
           QK     S  PN + + L  SD+H +C WD+S
Sbjct: 177 QKEGYGLSWNPNLSGNLLSASDDHTICLWDIS 208


>sp|P24996|NU2M_PISOC NADH-ubiquinone oxidoreductase chain 2
           OS=Pisaster ochraceus GN=ND2 PE=3 SV=1
          Length = 353

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +1

Query: 1   AKSAVCSTVRVRLMKVQVGLKLHLSSSPPSTGVRNRFLLIACLAANTAL 147
           A+   C+ V   ++ + +   L L   PP TG  N+F+ + CL +N  L
Sbjct: 231 ARLVYCNNVMGNVLVLVI---LSLGGLPPLTGFLNKFIALECLLSNNLL 276


>sp|Q5RF92|RBBP4_PONAB Histone-binding protein RBBP4 OS=Pongo abelii
           GN=RBBP4 PE=2 SV=3
          Length = 425

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 242 QKSYTSTSSKPNGTPSSLKMSDEHQLCPWDVS 147
           QK     S  PN +   L  SD+H +C WD+S
Sbjct: 177 QKEGYGLSWNPNLSGHLLSASDDHTICLWDIS 208


>sp|Q60972|RBBP4_MOUSE Histone-binding protein RBBP4 OS=Mus musculus
           GN=Rbbp4 PE=1 SV=4
          Length = 425

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 242 QKSYTSTSSKPNGTPSSLKMSDEHQLCPWDVS 147
           QK     S  PN +   L  SD+H +C WD+S
Sbjct: 177 QKEGYGLSWNPNLSGHLLSASDDHTICLWDIS 208


>sp|Q09028|RBBP4_HUMAN Histone-binding protein RBBP4 OS=Homo sapiens
           GN=RBBP4 PE=1 SV=3
          Length = 425

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 242 QKSYTSTSSKPNGTPSSLKMSDEHQLCPWDVS 147
           QK     S  PN +   L  SD+H +C WD+S
Sbjct: 177 QKEGYGLSWNPNLSGHLLSASDDHTICLWDIS 208


>sp|Q9W7I5|RBBP4_CHICK Histone-binding protein RBBP4 OS=Gallus
           gallus GN=RBBP4 PE=1 SV=3
          Length = 425

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 242 QKSYTSTSSKPNGTPSSLKMSDEHQLCPWDVS 147
           QK     S  PN +   L  SD+H +C WD+S
Sbjct: 177 QKEGYGLSWNPNLSGHLLSASDDHTICLWDIS 208


>sp|Q3MHL3|RBBP4_BOVIN Histone-binding protein RBBP4 OS=Bos taurus
           GN=RBBP4 PE=1 SV=3
          Length = 425

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 242 QKSYTSTSSKPNGTPSSLKMSDEHQLCPWDVS 147
           QK     S  PN +   L  SD+H +C WD+S
Sbjct: 177 QKEGYGLSWNPNLSGHLLSASDDHTICLWDIS 208
tr_hit_id A0JT83
Definition tr|A0JT83|A0JT83_ARTS2 Peptidase C60, sortase A and B OS=Arthrobacter sp. (strain FB24)
Align length 40
Score (bit) 32.7
E-value 9.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945783|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_G21, 5'
         (301 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A0JT83|A0JT83_ARTS2 Peptidase C60, sortase A and B OS=Arthrob...    33   9.1  

>tr|A0JT83|A0JT83_ARTS2 Peptidase C60, sortase A and B
           OS=Arthrobacter sp. (strain FB24) GN=Arth_0855 PE=4 SV=1
          Length = 299

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +1

Query: 7   SAVCSTVRVRLMKVQVGLKLHLSSSPPSTGVRNRFLLIAC 126
           S    T+R R+  V   +K  L  SP  TGV NR +LI+C
Sbjct: 240 STATGTMRYRVESVDTYVKSSLKDSPIWTGVPNRLVLISC 279