DK945786 |
Clone id |
YMU02A01NGRL0010_H03 |
Library |
YMU02 |
Length |
475 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_H03. 5' end sequence. |
Accession |
DK945786 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL353Contig1 |
Sequence |
GAAAGAGGGGGGGAAGAAACAACTCGTGTCATATATTCTAGGAACCAAATTAGTTTCCAA TAAACAAATCAGACTTGCCTTAACCCAAATCTTTGGAATTGGACCCAAAAAAGCCACTTG GATTTGTGATCAATTAGGTCTCAGCGATAACACCAAGGTTAATAATCTGACTCGGCACCA AATTAACTGGATTAGCAAAATAGTACGACGAAAAAAGAAACTAGTTGATTCAGAATTAAA GAGAGGCATTCAAGAAAATATCAAACGATTAATTAATATTTGCTGTTACCGTGGATTTCG CCACAAAGCAGGATTGCCATTACGTGGTCAACGAACCCACAGCAATGCCAAAACCTTTCG CAAGTTAAGAATTCCAATCAATCAACGGAAAAAGGAGAATAATTCGCGTCTTTTCAAAGG CAAGAATAGAGGAAGGCAAGACGACNAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P26872 |
Definition |
sp|P26872|RT13_MARPO Ribosomal protein S13, mitochondrial OS=Marchantia polymorpha |
Align length |
115 |
Score (bit) |
160.0 |
E-value |
2.0e-39 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK945786|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0010_H03, 5' (446 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P26872|RT13_MARPO Ribosomal protein S13, mitochondrial OS=Mar... 160 2e-39 sp|P23209|RT13_DAUCA Ribosomal protein S13, mitochondrial OS=Dau... 124 2e-28 sp|P05488|RT13_TOBAC Ribosomal protein S13, mitochondrial OS=Nic... 116 5e-26 sp|P08977|RT13_MAIZE Ribosomal protein S13, mitochondrial OS=Zea... 109 6e-24 sp|P07924|RT13_WHEAT Ribosomal protein S13, mitochondrial OS=Tri... 108 1e-23 sp|Q2RQY2|RS13_RHORT 30S ribosomal protein S13 OS=Rhodospirillum... 107 2e-23 sp|P15758|RT13_OENBE Ribosomal protein S13, mitochondrial OS=Oen... 107 2e-23 sp|A5FZU3|RS13_ACICJ 30S ribosomal protein S13 OS=Acidiphilium c... 105 7e-23 sp|A7HM27|RS13_FERNB 30S ribosomal protein S13 OS=Fervidobacteri... 104 1e-22 sp|Q0BUM8|RS13_GRABC 30S ribosomal protein S13 OS=Granulibacter ... 104 2e-22 sp|A0LIL4|RS13_SYNFM 30S ribosomal protein S13 OS=Syntrophobacte... 102 1e-21 sp|A5D5E5|RS13_PELTS 30S ribosomal protein S13 OS=Pelotomaculum ... 102 1e-21 sp|A6LLN8|RS13_THEM4 30S ribosomal protein S13 OS=Thermosipho me... 100 4e-21 sp|A8F4T6|RS13_THELT 30S ribosomal protein S13 OS=Thermotoga let... 100 4e-21 sp|Q8R7X9|RS13_THETN 30S ribosomal protein S13 OS=Thermoanaeroba... 100 5e-21 sp|Q5FU05|RS13_GLUOX 30S ribosomal protein S13 OS=Gluconobacter ... 99 8e-21 sp|Q2G5A8|RS13_NOVAD 30S ribosomal protein S13 OS=Novosphingobiu... 99 1e-20 sp|Q0ANS2|RS13_MARMM 30S ribosomal protein S13 OS=Maricaulis mar... 99 1e-20 sp|Q5HAU3|RS13_EHRRW 30S ribosomal protein S13 OS=Ehrlichia rumi... 99 1e-20 sp|Q5FFR9|RS13_EHRRG 30S ribosomal protein S13 OS=Ehrlichia rumi... 99 1e-20 sp|Q2LQD2|RS13_SYNAS 30S ribosomal protein S13 OS=Syntrophus aci... 98 1e-20 sp|A7HWT3|RS13_PARL1 30S ribosomal protein S13 OS=Parvibaculum l... 98 1e-20 sp|Q3ZZP9|RS13_DEHSC 30S ribosomal protein S13 OS=Dehalococcoide... 98 1e-20 sp|A5FRW9|RS13_DEHSB 30S ribosomal protein S13 OS=Dehalococcoide... 98 1e-20 sp|Q6MJ33|RS13_BDEBA 30S ribosomal protein S13 OS=Bdellovibrio b... 98 1e-20 sp|A5USG5|RS13_ROSS1 30S ribosomal protein S13 OS=Roseiflexus sp... 98 2e-20 sp|Q2GH35|RS13_EHRCR 30S ribosomal protein S13 OS=Ehrlichia chaf... 98 2e-20 sp|Q5NQ42|RS13_ZYMMO 30S ribosomal protein S13 OS=Zymomonas mobi... 97 2e-20 sp|A7NR39|RS13_ROSCS 30S ribosomal protein S13 OS=Roseiflexus ca... 97 2e-20 sp|Q3YRN0|RS13_EHRCJ 30S ribosomal protein S13 OS=Ehrlichia cani... 97 2e-20
>sp|P26872|RT13_MARPO Ribosomal protein S13, mitochondrial OS=Marchantia polymorpha GN=RPS13 PE=3 SV=2 Length = 120
Score = 160 bits (406), Expect = 2e-39 Identities = 82/115 (71%), Positives = 96/115 (83%) Frame = +2
Query: 26 VSYILGTKLVSNKQIRLALTQIFGIGPKKATWICDQLGLSDNTKVNNLTRHQINWISKIV 205 +SYILGT L SNKQ+++ALT+IFGIGPKKA +CDQLGLSD KVN LT++Q + I KI+ Sbjct: 1 MSYILGTNLNSNKQVKIALTRIFGIGPKKAIQVCDQLGLSDTIKVNKLTKYQFDQILKII 60
Query: 206 RRKKKLVDSELKRGIQENIKRLINICCYRGFRHKAGLPLRGQRTHSNAKTFRKLR 370 + LVDSELKR IQ +IKRLI+I CYRGFRH AGLPLRGQRTH+NAKT RKLR Sbjct: 61 SQNY-LVDSELKRVIQRDIKRLISIGCYRGFRHNAGLPLRGQRTHTNAKTCRKLR 114
>sp|P23209|RT13_DAUCA Ribosomal protein S13, mitochondrial OS=Daucus carota GN=RPS13 PE=3 SV=1 Length = 116
Score = 124 bits (311), Expect = 2e-28 Identities = 59/111 (53%), Positives = 87/111 (78%) Frame = +2
Query: 32 YILGTKLVSNKQIRLALTQIFGIGPKKATWICDQLGLSDNTKVNNLTRHQINWISKIVRR 211 YI G +LV++KQ+R+ALT+++GIGPKKA +C +LG+S N K+ LT++QI+ + +++ Sbjct: 3 YISGARLVADKQVRIALTKMYGIGPKKAIQVCYRLGISGNIKIKELTKYQIDQMEQMI-G 61
Query: 212 KKKLVDSELKRGIQENIKRLINICCYRGFRHKAGLPLRGQRTHSNAKTFRK 364 + +V ELKRG + +I+R I+I CYRG RH+ GLPLRGQRTH+NA+T RK Sbjct: 62 QDHVVHWELKRGERADIERFISISCYRGIRHQDGLPLRGQRTHTNARTCRK 112
>sp|P05488|RT13_TOBAC Ribosomal protein S13, mitochondrial OS=Nicotiana tabacum GN=RPS13 PE=3 SV=2 Length = 116
Score = 116 bits (290), Expect = 5e-26 Identities = 59/112 (52%), Positives = 84/112 (75%) Frame = +2
Query: 32 YILGTKLVSNKQIRLALTQIFGIGPKKATWICDQLGLSDNTKVNNLTRHQINWISKIVRR 211 YI G +LV ++Q+R+A T+I GIGPKKA + +LG+S N K+ LT++QI+ I +++ + Sbjct: 3 YISGARLVGDEQVRIASTKIDGIGPKKAIQVRYRLGISGNIKIKELTKYQIDQIEQMIGQ 62
Query: 212 KKKLVDSELKRGIQENIKRLINICCYRGFRHKAGLPLRGQRTHSNAKTFRKL 367 +V ELKRG + +I+RLI+I CYRG RH+ G PLRGQRTH+NA+T RKL Sbjct: 63 DH-VVHWELKRGERADIERLISISCYRGIRHQDGSPLRGQRTHTNARTCRKL 113
>sp|P08977|RT13_MAIZE Ribosomal protein S13, mitochondrial OS=Zea mays GN=RPS13 PE=3 SV=2 Length = 129
Score = 109 bits (272), Expect = 6e-24 Identities = 61/131 (46%), Positives = 91/131 (69%) Frame = +2
Query: 26 VSYILGTKLVSNKQIRLALTQIFGIGPKKATWICDQLGLSDNTKVNNLTRHQINWISKIV 205 +SYI G + + ++Q+R+A T++ GIGPKKA + +LG+S N K++ LT++QI+ I +++ Sbjct: 1 MSYISGARSLPDEQVRIASTKMDGIGPKKAIQLRYRLGISGNIKIHELTKYQIDQIEQMI 60
Query: 206 RRKKKLVDSELKRGIQENIKRLINICCYRGFRHKAGLPLRGQRTHSNAKTFRKLRIPINQ 385 + +V ELKRG + +I+RLI+I YRG RH+ G PLRGQRTH+NA+T RK Q Sbjct: 61 AQDH-VVHWELKRGERADIERLISISRYRGIRHQDGSPLRGQRTHTNARTARK------Q 113
Query: 386 RKKENNSRLFK 418 +K N RL K Sbjct: 114 IRKGNERRLPK 124
>sp|P07924|RT13_WHEAT Ribosomal protein S13, mitochondrial OS=Triticum aestivum GN=RPS13 PE=3 SV=2 Length = 116
Score = 108 bits (270), Expect = 1e-23 Identities = 56/113 (49%), Positives = 84/113 (74%) Frame = +2
Query: 26 VSYILGTKLVSNKQIRLALTQIFGIGPKKATWICDQLGLSDNTKVNNLTRHQINWISKIV 205 +SYI G + + ++Q+R+A T++ GIGPKKA + +LG+S N K+N LT++QI+ I +++ Sbjct: 1 MSYISGARSLPDEQVRIASTKMDGIGPKKAIQLRYRLGISGNIKMNELTKYQIDQIEQMI 60
Query: 206 RRKKKLVDSELKRGIQENIKRLINICCYRGFRHKAGLPLRGQRTHSNAKTFRK 364 + +V ELKRG + +I+RLI+I YRG RH+ G PLRGQRTH+NA+T RK Sbjct: 61 AQDH-VVHWELKRGERADIERLISISRYRGIRHQDGSPLRGQRTHTNARTARK 112
>sp|Q2RQY2|RS13_RHORT 30S ribosomal protein S13 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=rpsM PE=3 SV=1 Length = 122
Score = 107 bits (268), Expect = 2e-23 Identities = 53/120 (44%), Positives = 85/120 (70%) Frame = +2
Query: 35 ILGTKLVSNKQIRLALTQIFGIGPKKATWICDQLGLSDNTKVNNLTRHQINWISKIVRRK 214 I G + SNK++ +ALT I+GIG KA IC++ G+++N +VN+L+ ++ I +I+ + Sbjct: 4 IAGVNIPSNKRVCIALTYIYGIGRTKAGEICERTGIAENRRVNDLSDDEVVRIREIIDSE 63
Query: 215 KKLVDSELKRGIQENIKRLINICCYRGFRHKAGLPLRGQRTHSNAKTFRKLRIPINQRKK 394 K V+ +L+R + NIKR++++ CYRG RH+ GLP+RGQRTH+NA+T + PI +KK Sbjct: 64 YK-VEGDLRREVAMNIKRIMDLGCYRGLRHRKGLPVRGQRTHTNARTRKGPAKPIAGKKK 122
>sp|P15758|RT13_OENBE Ribosomal protein S13, mitochondrial OS=Oenothera bertiana GN=RPS13 PE=3 SV=2 Length = 114
Score = 107 bits (267), Expect = 2e-23 Identities = 57/113 (50%), Positives = 83/113 (73%) Frame = +2
Query: 26 VSYILGTKLVSNKQIRLALTQIFGIGPKKATWICDQLGLSDNTKVNNLTRHQINWISKIV 205 +SYI G +LV+++Q+R+A T++ GIGPKKA + +LG N K LT++QI+ I ++ Sbjct: 1 MSYISGARLVADEQVRIASTKMDGIGPKKAIQVRSRLG--GNIKRKELTKYQIDQIEQM- 57
Query: 206 RRKKKLVDSELKRGIQENIKRLINICCYRGFRHKAGLPLRGQRTHSNAKTFRK 364 R + +V ELKRG + +I+R I+I CYRG RH+ GLPLRGQR+H+NA+T RK Sbjct: 58 RGQDHVVHWELKRGERADIERFISISCYRGIRHQDGLPLRGQRSHTNARTSRK 110
>sp|A5FZU3|RS13_ACICJ 30S ribosomal protein S13 OS=Acidiphilium cryptum (strain JF-5) GN=rpsM PE=3 SV=1 Length = 125
Score = 105 bits (263), Expect = 7e-23 Identities = 51/120 (42%), Positives = 81/120 (67%) Frame = +2
Query: 35 ILGTKLVSNKQIRLALTQIFGIGPKKATWICDQLGLSDNTKVNNLTRHQINWISKIVRRK 214 I G + SNK++ ++L I+GIGP KA IC L + ++ +VN L+ +I I +++ R Sbjct: 4 IAGVNIPSNKRVLISLRYIYGIGPAKAREICQSLEIGEDKRVNQLSEDEIMKIRELIDRD 63
Query: 215 KKLVDSELKRGIQENIKRLINICCYRGFRHKAGLPLRGQRTHSNAKTFRKLRIPINQRKK 394 + V+ +L+R + NIKRL+++ CYRG RH+ GLP+RGQRTH+NA+T + + I +KK Sbjct: 64 YR-VEGDLRREVAMNIKRLVDLGCYRGLRHRKGLPVRGQRTHTNARTRKGKAVAIAGKKK 122
>sp|A7HM27|RS13_FERNB 30S ribosomal protein S13 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=rpsM PE=3 SV=1 Length = 123
Score = 104 bits (260), Expect = 1e-22 Identities = 54/120 (45%), Positives = 80/120 (66%) Frame = +2
Query: 35 ILGTKLVSNKQIRLALTQIFGIGPKKATWICDQLGLSDNTKVNNLTRHQINWISKIVRRK 214 I+G ++ SNK++ +AL ++GIGP +A IC G+ + +V LT +I+ I+ +++ Sbjct: 4 IVGVEIPSNKKVHIALRYLYGIGPTRAMEICKNTGVDPDKRVKELTEDEISKIASFIQQN 63
Query: 215 KKLVDSELKRGIQENIKRLINICCYRGFRHKAGLPLRGQRTHSNAKTFRKLRIPINQRKK 394 K V+ EL+ + NIKRL++I CYRG RHK GLP+RGQRT SNA+T RK P +KK Sbjct: 64 YK-VEGELRTEVMRNIKRLMDIGCYRGLRHKLGLPVRGQRTRSNART-RKGPRPSRIKKK 121
>sp|Q0BUM8|RS13_GRABC 30S ribosomal protein S13 OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rpsM PE=3 SV=2 Length = 125
Score = 104 bits (259), Expect = 2e-22 Identities = 50/120 (41%), Positives = 82/120 (68%) Frame = +2
Query: 35 ILGTKLVSNKQIRLALTQIFGIGPKKATWICDQLGLSDNTKVNNLTRHQINWISKIVRRK 214 I G + +NK++ ++L I+GIGP +A IC +L + D +VN L+ +I I +++ R+ Sbjct: 4 IAGVNIPTNKRVAISLRYIYGIGPAQAQKICTELSIPDERRVNQLSDDEILRIRELIDRE 63
Query: 215 KKLVDSELKRGIQENIKRLINICCYRGFRHKAGLPLRGQRTHSNAKTFRKLRIPINQRKK 394 + V+ +L+R + NIKRL+++ CYRG RH+ GLP+RGQRTH+NA+T + + I +KK Sbjct: 64 YR-VEGDLRREVAMNIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGKAVAIAGKKK 122
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q1XG94 |
Definition |
tr|Q1XG94|Q1XG94_PHYPA Ribosomal protein S13 OS=Physcomitrella patens |
Align length |
122 |
Score (bit) |
156.0 |
E-value |
5.0e-37 |
Report |
|