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NBDC - LSDB Archive
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DK945794
Clone id YMU02A01NGRL0010_H13
Library
Length 244
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_H13. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
AACTCAATTTTGATCAAACGGCTTTGGGGCGTTTACCTCCTCCCGCCTCTGAAGATGTTT
CAATTCAATTAGTTTTGAATTCAAGAAATTCTTTTAGGAGATAAATCTTGAGAACAAGAA
AACTTGGCACCCAAGTCATAATTTGCCACACAAATTACCTGCTCAAATAATTTTTTGGAT
AATCTGTCTGCTCAAAAACTGTCGAATAAAGATCAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA
■■Homology search results ■■ -
sp_hit_id Q85FH1
Definition sp|Q85FH1|NDHI_ADICA NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Adiantum capillus-veneris
Align length 33
Score (bit) 68.2
E-value 1.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945794|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_H13, 5'
         (214 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q85FH1|NDHI_ADICA NAD(P)H-quinone oxidoreductase subunit I, c...    68   1e-11
sp|A6MMH3|NDHI_CHLSC NAD(P)H-quinone oxidoreductase subunit I, c...    35   0.12 
sp|Q06FQ0|NDHI_PELHO NAD(P)H-quinone oxidoreductase subunit I, c...    35   0.15 
sp|Q70XW0|NDHI_AMBTC NAD(P)H-quinone oxidoreductase subunit I, c...    35   0.15 
sp|Q32S03|NDHI_STAPU NAD(P)H-quinone oxidoreductase subunit I, c...    34   0.20 
sp|A4GYX0|NDHI_POPTR NAD(P)H-quinone oxidoreductase subunit I, c...    33   0.44 
sp|Q14FA4|NDHI_POPAL NAD(P)H-quinone oxidoreductase subunit I, c...    33   0.44 
sp|Q9M3I7|NDHI_SPIOL NAD(P)H-quinone oxidoreductase subunit I, c...    33   0.58 
sp|Q2L959|NDHI_GOSHI NAD(P)H-quinone oxidoreductase subunit I, c...    33   0.58 
sp|A0ZZ89|NDHI_GOSBA NAD(P)H-quinone oxidoreductase subunit I, c...    33   0.58 
sp|Q09MC2|NDHI_CITSI NAD(P)H-quinone oxidoreductase subunit I, c...    33   0.58 
sp|Q0ZIW4|NDHI_VITVI NAD(P)H-quinone oxidoreductase subunit I, c...    32   0.75 
sp|A4QJY6|NDHI_OLIPU NAD(P)H-quinone oxidoreductase subunit I, c...    32   0.75 
sp|Q9MTH8|NDHI_OENEH NAD(P)H-quinone oxidoreductase subunit I, c...    32   0.75 
sp|A4QLY9|NDHI_NASOF NAD(P)H-quinone oxidoreductase subunit I, c...    32   0.75 
sp|Q09WW4|NDHI_MORIN NAD(P)H-quinone oxidoreductase subunit I, c...    32   0.75 
sp|A4QLQ1|NDHI_LOBMA NAD(P)H-quinone oxidoreductase subunit I, c...    32   0.75 
sp|A4QLG3|NDHI_LEPVR NAD(P)H-quinone oxidoreductase subunit I, c...    32   0.75 
sp|A4QKY8|NDHI_CRUWA NAD(P)H-quinone oxidoreductase subunit I, c...    32   0.75 
sp|A4QKG1|NDHI_BARVE NAD(P)H-quinone oxidoreductase subunit I, c...    32   0.75 
sp|A4QJQ4|NDHI_AETGR NAD(P)H-quinone oxidoreductase subunit I, c...    32   0.75 
sp|A4QKP9|NDHI_CAPBU NAD(P)H-quinone oxidoreductase subunit I, c...    32   0.98 
sp|A4QJH0|NDHI_AETCO NAD(P)H-quinone oxidoreductase subunit I, c...    32   0.98 
sp|Q32RK1|NDHI_ZYGCR NAD(P)H-quinone oxidoreductase subunit I, c...    32   1.3  
sp|A6MM91|NDHI_BUXMI NAD(P)H-quinone oxidoreductase subunit I, c...    32   1.3  
sp|A6MMQ9|NDHI_DIOEL NAD(P)H-quinone oxidoreductase subunit I, c...    31   1.7  
sp|A1EA63|NDHI_AGRST NAD(P)H-quinone oxidoreductase subunit I, c...    31   1.7  
sp|Q8HVM2|NDHI_PSIGN NAD(P)H-quinone oxidoreductase subunit I, c...    31   2.2  
sp|Q8HVM4|NDHI_PSAAN NAD(P)H-quinone oxidoreductase subunit I, c...    31   2.2  
sp|Q06GK9|NDHI_PIPCE NAD(P)H-quinone oxidoreductase subunit I, c...    31   2.2  

>sp|Q85FH1|NDHI_ADICA NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic OS=Adiantum capillus-veneris GN=ndhI PE=2
           SV=2
          Length = 167

 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 33/33 (100%), Positives = 33/33 (100%)
 Frame = +3

Query: 3   LNFDQTALGRLPPPASEDVSIQLVLNSRNSFRR 101
           LNFDQTALGRLPPPASEDVSIQLVLNSRNSFRR
Sbjct: 135 LNFDQTALGRLPPPASEDVSIQLVLNSRNSFRR 167


>sp|A6MMH3|NDHI_CHLSC NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic OS=Chloranthus spicatus GN=ndhI PE=3 SV=1
          Length = 180

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 16/27 (59%), Positives = 20/27 (74%)
 Frame = +3

Query: 3   LNFDQTALGRLPPPASEDVSIQLVLNS 83
           LN++Q ALGRLP    ED +IQ +LNS
Sbjct: 135 LNYNQIALGRLPMSVIEDYTIQTILNS 161


>sp|Q06FQ0|NDHI_PELHO NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic OS=Pelargonium hortorum GN=ndhI PE=3 SV=1
          Length = 167

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 14/26 (53%), Positives = 20/26 (76%)
 Frame = +3

Query: 3   LNFDQTALGRLPPPASEDVSIQLVLN 80
           LN++QTALGRLP P  +D +I+ + N
Sbjct: 135 LNYNQTALGRLPMPVIDDYTIRTIFN 160


>sp|Q70XW0|NDHI_AMBTC NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic OS=Amborella trichopoda GN=ndhI PE=3 SV=1
          Length = 180

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = +3

Query: 3   LNFDQTALGRLPPPASEDVSIQLVLNSRNS 92
           LN++Q ALGRLP P   D +IQ ++NS  +
Sbjct: 135 LNYNQIALGRLPIPVVGDYTIQTIMNSNQT 164


>sp|Q32S03|NDHI_STAPU NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic OS=Staurastrum punctulatum GN=ndhI PE=3
           SV=1
          Length = 181

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 15/25 (60%), Positives = 19/25 (76%)
 Frame = +3

Query: 3   LNFDQTALGRLPPPASEDVSIQLVL 77
           LN+DQ ALGRLP PAS+D  +  +L
Sbjct: 132 LNYDQVALGRLPNPASKDPLVHPIL 156


>sp|A4GYX0|NDHI_POPTR NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic OS=Populus trichocarpa GN=ndhI PE=3 SV=1
          Length = 176

 Score = 33.1 bits (74), Expect = 0.44
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = +3

Query: 3   LNFDQTALGRLPPPASEDVSIQLVLNSRNS 92
           LN++Q ALGRLP    +D +I+ +LNS  S
Sbjct: 135 LNYNQIALGRLPMSVIDDYTIRTILNSPQS 164


>sp|Q14FA4|NDHI_POPAL NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic OS=Populus alba GN=ndhI PE=3 SV=1
          Length = 176

 Score = 33.1 bits (74), Expect = 0.44
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = +3

Query: 3   LNFDQTALGRLPPPASEDVSIQLVLNSRNS 92
           LN++Q ALGRLP    +D +I+ +LNS  S
Sbjct: 135 LNYNQIALGRLPMSVIDDYTIRTILNSPQS 164


>sp|Q9M3I7|NDHI_SPIOL NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic OS=Spinacia oleracea GN=ndhI PE=3 SV=1
          Length = 170

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 14/27 (51%), Positives = 21/27 (77%)
 Frame = +3

Query: 3   LNFDQTALGRLPPPASEDVSIQLVLNS 83
           LN++Q ALGRLP   ++D +I+ +LNS
Sbjct: 135 LNYNQIALGRLPISITDDYTIRTILNS 161


>sp|Q2L959|NDHI_GOSHI NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic OS=Gossypium hirsutum GN=ndhI PE=3 SV=1
          Length = 167

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = +3

Query: 3   LNFDQTALGRLPPPASEDVSIQLVLNS 83
           LN++Q ALGRLP    +D +I+ VLNS
Sbjct: 135 LNYNQIALGRLPMSVIDDYTIRTVLNS 161


>sp|A0ZZ89|NDHI_GOSBA NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic OS=Gossypium barbadense GN=ndhI PE=3 SV=1
          Length = 167

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = +3

Query: 3   LNFDQTALGRLPPPASEDVSIQLVLNS 83
           LN++Q ALGRLP    +D +I+ VLNS
Sbjct: 135 LNYNQIALGRLPMSVIDDYTIRTVLNS 161
tr_hit_id B7T341
Definition tr|B7T341|B7T341_9ROSI NADH-plastoquinone oxidoreductase subunit I OS=Geranium carolinianum
Align length 38
Score (bit) 38.9
E-value 0.13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945794|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_H13, 5'
         (214 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7T341|B7T341_9ROSI NADH-plastoquinone oxidoreductase subunit...    39   0.13 
tr|B7T445|B7T445_9ROSI NADH-plastoquinone oxidoreductase subunit...    38   0.29 
tr|A9QBP4|A9QBP4_PASBI NADH-plastoquinone oxidoreductase subunit...    37   0.38 
tr|B7T2X0|B7T2X0_EROTE NADH-plastoquinone oxidoreductase subunit...    37   0.66 
tr|B7T3Q3|B7T3Q3_9ROSI NADH-plastoquinone oxidoreductase subunit...    36   0.86 
tr|B7T3B1|B7T3B1_9ROSI NADH-plastoquinone oxidoreductase subunit...    35   1.9  
tr|B7T3I2|B7T3I2_9ROSI NADH-plastoquinone oxidoreductase subunit...    35   2.5  
tr|B7T3X4|B7T3X4_9ROSI NADH-plastoquinone oxidoreductase subunit...    34   4.3  

>tr|B7T341|B7T341_9ROSI NADH-plastoquinone oxidoreductase subunit I
           OS=Geranium carolinianum GN=ndhI PE=4 SV=1
          Length = 173

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 19/38 (50%), Positives = 27/38 (71%)
 Frame = +3

Query: 3   LNFDQTALGRLPPPASEDVSIQLVLNSRNSFRR*ILRT 116
           LN++Q ALGRLP P  ED +I+ +LNS  + +R I +T
Sbjct: 135 LNYNQIALGRLPMPVIEDYTIRTILNSPTNKKRKIGKT 172


>tr|B7T445|B7T445_9ROSI NADH-plastoquinone oxidoreductase subunit I
           OS=Pelargonium cotyledonis GN=ndhI PE=4 SV=1
          Length = 173

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 16/27 (59%), Positives = 22/27 (81%)
 Frame = +3

Query: 3   LNFDQTALGRLPPPASEDVSIQLVLNS 83
           LN++QTALGRLP P  +D +I+ +LNS
Sbjct: 135 LNYNQTALGRLPMPVIDDYTIRTILNS 161


>tr|A9QBP4|A9QBP4_PASBI NADH-plastoquinone oxidoreductase subunit I
           (Fragment) OS=Passiflora biflora GN=ndhI PE=3 SV=1
          Length = 163

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 17/27 (62%), Positives = 22/27 (81%)
 Frame = +3

Query: 3   LNFDQTALGRLPPPASEDVSIQLVLNS 83
           LN++Q ALGRLP  ASED +I+ +LNS
Sbjct: 135 LNYNQIALGRLPMSASEDYTIRTILNS 161


>tr|B7T2X0|B7T2X0_EROTE NADH-plastoquinone oxidoreductase subunit I
           OS=Erodium texanum GN=ndhI PE=4 SV=1
          Length = 171

 Score = 36.6 bits (83), Expect = 0.66
 Identities = 15/27 (55%), Positives = 22/27 (81%)
 Frame = +3

Query: 3   LNFDQTALGRLPPPASEDVSIQLVLNS 83
           LN++Q +LGRLP P  ED +I+++LNS
Sbjct: 135 LNYNQISLGRLPMPVIEDYTIRIILNS 161


>tr|B7T3Q3|B7T3Q3_9ROSI NADH-plastoquinone oxidoreductase subunit I
           OS=Monsonia speciosa GN=ndhI PE=4 SV=1
          Length = 175

 Score = 36.2 bits (82), Expect = 0.86
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = +3

Query: 3   LNFDQTALGRLPPPASEDVSIQLVLNSRNSFRR 101
           LN++Q ALGRLP P  ED +I+ + NS   + +
Sbjct: 135 LNYNQIALGRLPMPVIEDYTIRTIYNSATKYNK 167


>tr|B7T3B1|B7T3B1_9ROSI NADH-plastoquinone oxidoreductase subunit I
           OS=Geranium macrorrhizum GN=ndhI PE=4 SV=1
          Length = 173

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 16/33 (48%), Positives = 23/33 (69%)
 Frame = +3

Query: 3   LNFDQTALGRLPPPASEDVSIQLVLNSRNSFRR 101
           LN +Q +LGRLP P  ED +I+ +LNS  + +R
Sbjct: 135 LNSNQISLGRLPMPVIEDYTIRTILNSPTNTKR 167


>tr|B7T3I2|B7T3I2_9ROSI NADH-plastoquinone oxidoreductase subunit I
           OS=Geranium palmatum GN=ndhI PE=4 SV=1
          Length = 173

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 16/27 (59%), Positives = 20/27 (74%)
 Frame = +3

Query: 3   LNFDQTALGRLPPPASEDVSIQLVLNS 83
           LN +Q ALGRLP P  ED +I+ +LNS
Sbjct: 135 LNSNQIALGRLPMPVIEDYTIRTILNS 161


>tr|B7T3X4|B7T3X4_9ROSI NADH-plastoquinone oxidoreductase subunit I
           OS=Monsonia vanderietiae GN=ndhI PE=4 SV=1
          Length = 176

 Score = 33.9 bits (76), Expect = 4.3
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +3

Query: 3   LNFDQTALGRLPPPASEDVSIQLVLNSRNSFRR 101
           LN++Q ALGRLP    ED +I+ + NS   +++
Sbjct: 135 LNYNQIALGRLPMSVIEDYTIRAIFNSPTKYKK 167