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NBDC - LSDB Archive
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DK945804
Clone id YMU02A01NGRL0010_I01
Library
Length 612
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_I01. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
ATATTTTTTTTTTCTTGCTTATACGAACCCATATTCTATTCCTCCCGTCTATCTCTAGCT
TAAATCTCCCTCCCTGATCTGAAATTGCGGTGCTGGTATACGCGAGAATCCCTCTCTGAT
CCGACTCCCGATTGTAGTAAATACCAGGACTCCTCAATATTTGACTGACTAAAACTCTAG
CGATCCCATTAATAATAAATGTTCCTCCGGAATTCATCCAAGGAATAGATCCGAGTCGTA
CATCTTCCTCTTGCACTATTTGGTCTTCCTTACAAATCAATTAAGCTGGTACATATGGGT
CAGCGGAATACGTAATACATTGATACGCGGCATCTCTCTCTTCGAGAGAAGGTTCTGTCA
ATTGGTACTGATTTCCAATAGATCAGAATTCTACTTCCTTATCTGTATCTTCAATTTTTG
GGAAATTTTCAAGTTCCTTAAGCAATTTTTGATGAACGAAACGACTAANACCTTTAAATT
GAATTTGTGCAAGTTCTGGCAGTACGGGCATACCTCCACTTCCTCCTAACGAAGTGATAC
ATCTAGACCTACCTCTGAATTAAATTTCACAGACCAGTCTGATCGTTCTAATAATATAAT
TTGCAAATTCCC
■■Homology search results ■■ -
sp_hit_id Q85FM7
Definition sp|Q85FM7|RPOB_ADICA DNA-directed RNA polymerase subunit beta OS=Adiantum capillus-veneris
Align length 165
Score (bit) 317.0
E-value 2.0e-86
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945804|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_I01, 5'
         (596 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q85FM7|RPOB_ADICA DNA-directed RNA polymerase subunit beta OS...   317   2e-86
sp|A2T324|RPOB_ANGEV DNA-directed RNA polymerase subunit beta OS...   207   4e-53
sp|A6H5F9|RPOB_CYCTA DNA-directed RNA polymerase subunit beta OS...   203   6e-52
sp|P06272|RPOB_MARPO DNA-directed RNA polymerase subunit beta OS...   201   3e-51
sp|Q85BW1|RPOB_ANTFO DNA-directed RNA polymerase subunit beta OS...   200   5e-51
sp|Q8WI24|RPOB_PSINU DNA-directed RNA polymerase subunit beta OS...   196   7e-50
sp|Q6EW56|RPOB_NYMAL DNA-directed RNA polymerase subunit beta OS...   192   1e-48
sp|Q5QA72|RPOB_ACOGR DNA-directed RNA polymerase subunit beta OS...   192   1e-48
sp|Q3V542|RPOB_ACOCL DNA-directed RNA polymerase subunit beta OS...   191   2e-48
sp|A9LYH7|RPOB_ACOAM DNA-directed RNA polymerase subunit beta OS...   191   2e-48
sp|P60282|RPOB_AMBTC DNA-directed RNA polymerase subunit beta OS...   190   4e-48
sp|A6MMJ9|RPOB_DIOEL DNA-directed RNA polymerase subunit beta OS...   189   1e-47
sp|Q09G54|RPOB_PLAOC DNA-directed RNA polymerase subunit beta OS...   187   3e-47
sp|Q0G9M7|RPOB_LIRTU DNA-directed RNA polymerase subunit beta OS...   187   5e-47
sp|Q9BBS9|RPOB_LOTJA DNA-directed RNA polymerase subunit beta OS...   186   8e-47
sp|A9L988|RPOB_LEMMI DNA-directed RNA polymerase subunit beta OS...   186   8e-47
sp|A6MMB4|RPOB_CHLSC DNA-directed RNA polymerase subunit beta OS...   186   8e-47
sp|A0A327|RPOB_COFAR DNA-directed RNA polymerase subunit beta OS...   185   1e-46
sp|Q06GR8|RPOB_PIPCE DNA-directed RNA polymerase subunit beta OS...   184   3e-46
sp|Q0ZJ28|RPOB_VITVI DNA-directed RNA polymerase subunit beta OS...   184   4e-46
sp|A7M958|RPOB_CUSRE DNA-directed RNA polymerase subunit beta OS...   183   7e-46
sp|Q09MI6|RPOB_CITSI DNA-directed RNA polymerase subunit beta OS...   183   7e-46
sp|A8SE86|RPOB_CERDE DNA-directed RNA polymerase subunit beta OS...   183   7e-46
sp|P11703|RPOB_SPIOL DNA-directed RNA polymerase subunit beta OS...   182   1e-45
sp|A4GYQ0|RPOB_POPTR DNA-directed RNA polymerase subunit beta OS...   182   1e-45
sp|Q14FG5|RPOB_POPAL DNA-directed RNA polymerase subunit beta OS...   182   1e-45
sp|Q06H05|RPOB_DRIGR DNA-directed RNA polymerase subunit beta OS...   182   1e-45
sp|A6MM28|RPOB_BUXMI DNA-directed RNA polymerase subunit beta OS...   182   1e-45
sp|A7Y3B9|RPOB_IPOPU DNA-directed RNA polymerase subunit beta OS...   182   1e-45
sp|Q0G9X0|RPOB_DAUCA DNA-directed RNA polymerase subunit beta OS...   182   1e-45

>sp|Q85FM7|RPOB_ADICA DNA-directed RNA polymerase subunit beta
           OS=Adiantum capillus-veneris GN=rpoB PE=2 SV=2
          Length = 1071

 Score =  317 bits (813), Expect = 2e-86
 Identities = 160/165 (96%), Positives = 160/165 (96%)
 Frame = -3

Query: 495 MPVLPELAQIQFKGXSRFVHQKLLKELENFPKIEDTDKEVEF*SIGNQYQLTEPSLEERD 316
           MPVLPELAQIQFKG SRFVHQKLLKELENFPKIEDTDKEVEF SIGNQYQLTEPSLEERD
Sbjct: 1   MPVLPELAQIQFKGFSRFVHQKLLKELENFPKIEDTDKEVEFRSIGNQYQLTEPSLEERD 60

Query: 315 AAYQCITYSADPYVPA*LICKEDQIVQEEDVRLGSIPWMNSGGTFIINGIARVLVSQILR 136
           AAYQCITYSAD YVPA LICKEDQIVQEEDVRLGSIPWMNSGGTFIINGIARVLVSQILR
Sbjct: 61  AAYQCITYSADLYVPAQLICKEDQIVQEEDVRLGSIPWMNSGGTFIINGIARVLVSQILR 120

Query: 135 SPGIYYNRESDQRGILAYTSTAISDQGGRFKLEIDGRNRIWVRIS 1
           SPGIYYNRESDQRGILAYTST ISDQGGRFKLEIDGRNRIWVRIS
Sbjct: 121 SPGIYYNRESDQRGILAYTSTVISDQGGRFKLEIDGRNRIWVRIS 165


>sp|A2T324|RPOB_ANGEV DNA-directed RNA polymerase subunit beta
           OS=Angiopteris evecta GN=rpoB PE=3 SV=1
          Length = 1070

 Score =  207 bits (526), Expect = 4e-53
 Identities = 102/165 (61%), Positives = 125/165 (75%)
 Frame = -3

Query: 495 MPVLPELAQIQFKGXSRFVHQKLLKELENFPKIEDTDKEVEF*SIGNQYQLTEPSLEERD 316
           M VLPE  +IQF+G  RF+HQ L++EL NFPKIED D+EVEF   G +Y+LTEP ++ERD
Sbjct: 9   MFVLPEFGRIQFEGFQRFIHQDLVEELTNFPKIEDIDQEVEFRLFGERYRLTEPCIKERD 68

Query: 315 AAYQCITYSADPYVPA*LICKEDQIVQEEDVRLGSIPWMNSGGTFIINGIARVLVSQILR 136
           A YQ  TYS+D YVPA L+ + +  +Q + V  GSIP MNS GTF+INGIARV+++QILR
Sbjct: 69  AVYQSFTYSSDLYVPAQLMRRRNGRIQRQTVHFGSIPLMNSQGTFVINGIARVVINQILR 128

Query: 135 SPGIYYNRESDQRGILAYTSTAISDQGGRFKLEIDGRNRIWVRIS 1
           SPGIYY+ E D  G   YT T ISD GGRFK EIDG+ RIWVR+S
Sbjct: 129 SPGIYYDSELDHNGNSIYTGTIISDWGGRFKSEIDGKKRIWVRLS 173


>sp|A6H5F9|RPOB_CYCTA DNA-directed RNA polymerase subunit beta
           OS=Cycas taitungensis GN=rpoB PE=3 SV=1
          Length = 1072

 Score =  203 bits (516), Expect = 6e-52
 Identities = 95/166 (57%), Positives = 129/166 (77%)
 Frame = -3

Query: 498 GMPVLPELAQIQFKGXSRFVHQKLLKELENFPKIEDTDKEVEF*SIGNQYQLTEPSLEER 319
           G   +PE  +IQF+G  RF+ Q L++EL+NFPKIEDTD+E+E    GN+Y+L EP ++ER
Sbjct: 8   GTSTIPEFGKIQFEGFCRFIDQGLIEELQNFPKIEDTDQEIESQLFGNKYELAEPLIKER 67

Query: 318 DAAYQCITYSADPYVPA*LICKEDQIVQEEDVRLGSIPWMNSGGTFIINGIARVLVSQIL 139
           +A YQ +TYS++ YVPA LI +  + +Q++ V +G++P MNS GTF++NGI+R++V+QIL
Sbjct: 68  NAVYQSLTYSSELYVPARLIQRNSRKIQKQTVLIGNLPLMNSQGTFVVNGISRIVVNQIL 127

Query: 138 RSPGIYYNRESDQRGILAYTSTAISDQGGRFKLEIDGRNRIWVRIS 1
           RSPGIYY+ E DQ GI  YTST ISD GGR KLEIDG+ RIW R+S
Sbjct: 128 RSPGIYYSSEPDQSGITLYTSTIISDWGGRSKLEIDGKTRIWARVS 173


>sp|P06272|RPOB_MARPO DNA-directed RNA polymerase subunit beta
           OS=Marchantia polymorpha GN=rpoB PE=3 SV=1
          Length = 1065

 Score =  201 bits (510), Expect = 3e-51
 Identities = 100/163 (61%), Positives = 123/163 (75%)
 Frame = -3

Query: 489 VLPELAQIQFKGXSRFVHQKLLKELENFPKIEDTDKEVEF*SIGNQYQLTEPSLEERDAA 310
           +LPE  +IQF+G +RF++Q L +EL NFP IED D+E EF   G QY+L EP L+ERDA 
Sbjct: 5   ILPEFGKIQFEGFNRFINQGLSEELSNFPIIEDIDQEFEFQIFGEQYKLAEPLLKERDAV 64

Query: 309 YQCITYSADPYVPA*LICKEDQIVQEEDVRLGSIPWMNSGGTFIINGIARVLVSQILRSP 130
           YQ ITYS+D YVPA L  K+   +Q++ V LGSIP MNS GTF++NG+ARV+++QILRSP
Sbjct: 65  YQSITYSSDVYVPAQLTQKKKGKIQKQIVFLGSIPLMNSQGTFVVNGVARVIINQILRSP 124

Query: 129 GIYYNRESDQRGILAYTSTAISDQGGRFKLEIDGRNRIWVRIS 1
           GIYYN E D  GI  YT T IS+ GGR KLEIDG+ RIW RIS
Sbjct: 125 GIYYNSELDHNGIPIYTGTLISNWGGRLKLEIDGKTRIWARIS 167


>sp|Q85BW1|RPOB_ANTFO DNA-directed RNA polymerase subunit beta
           OS=Anthoceros formosae GN=rpoB PE=2 SV=1
          Length = 1071

 Score =  200 bits (508), Expect = 5e-51
 Identities = 101/163 (61%), Positives = 122/163 (74%)
 Frame = -3

Query: 489 VLPELAQIQFKGXSRFVHQKLLKELENFPKIEDTDKEVEF*SIGNQYQLTEPSLEERDAA 310
           VLPE  +IQF+G  RF+   L+KEL +FPKIEDTD+E EF     QYQL EP +EERDA 
Sbjct: 11  VLPEFTEIQFEGFHRFIKYGLVKELNDFPKIEDTDQEFEFQLFSRQYQLAEPPIEERDAI 70

Query: 309 YQCITYSADPYVPA*LICKEDQIVQEEDVRLGSIPWMNSGGTFIINGIARVLVSQILRSP 130
           YQ ITYS+D YVPA L  ++   V+++ V LGSIP MNS GTF++NG+ARV+++QILRSP
Sbjct: 71  YQSITYSSDLYVPAQLTERKKGRVKKQIVFLGSIPLMNSQGTFVVNGVARVIINQILRSP 130

Query: 129 GIYYNRESDQRGILAYTSTAISDQGGRFKLEIDGRNRIWVRIS 1
           GIYYN E D+ GI  YT T ISD G R KLEIDG+ RIW RIS
Sbjct: 131 GIYYNSELDRNGIPIYTGTIISDWGRRLKLEIDGKTRIWARIS 173


>sp|Q8WI24|RPOB_PSINU DNA-directed RNA polymerase subunit beta
           OS=Psilotum nudum GN=rpoB PE=3 SV=1
          Length = 1066

 Score =  196 bits (498), Expect = 7e-50
 Identities = 96/166 (57%), Positives = 128/166 (77%)
 Frame = -3

Query: 498 GMPVLPELAQIQFKGXSRFVHQKLLKELENFPKIEDTDKEVEF*SIGNQYQLTEPSLEER 319
           GM  LP    IQ++G  RF++Q L++EL  FPKI+D D+EVEF  +G+QY+L EPS++E+
Sbjct: 8   GMFALPGFDLIQYEGFKRFINQGLMEELLKFPKIQDADQEVEFLLVGDQYKLREPSIKEK 67

Query: 318 DAAYQCITYSADPYVPA*LICKEDQIVQEEDVRLGSIPWMNSGGTFIINGIARVLVSQIL 139
           DA Y+C+TYS++ YVPA L  K ++ ++E+ + +GSIP M S GTFIING+ RVLV+QI+
Sbjct: 68  DAVYKCVTYSSELYVPARLTQKRNRRIREQILFMGSIPLMTSQGTFIINGVTRVLVNQIV 127

Query: 138 RSPGIYYNRESDQRGILAYTSTAISDQGGRFKLEIDGRNRIWVRIS 1
           RSPGI+Y+RE D + I  YT T IS+ GGRFKLEIDGR RIW RIS
Sbjct: 128 RSPGIFYSREPDHKRIPLYTGTIISNWGGRFKLEIDGRMRIWARIS 173


>sp|Q6EW56|RPOB_NYMAL DNA-directed RNA polymerase subunit beta
           OS=Nymphaea alba GN=rpoB PE=3 SV=1
          Length = 1071

 Score =  192 bits (487), Expect = 1e-48
 Identities = 95/170 (55%), Positives = 123/170 (72%)
 Frame = -3

Query: 510 GGSGGMPVLPELAQIQFKGXSRFVHQKLLKELENFPKIEDTDKEVEF*SIGNQYQLTEPS 331
           GG  GM  +P  +QIQF+G  RF+ Q L++EL  FPKIEDTD+E+EF   G  YQL EP 
Sbjct: 5   GGDEGMFTIPGFSQIQFEGFCRFIDQGLMEELHQFPKIEDTDQEIEFQLFGESYQLVEPL 64

Query: 330 LEERDAAYQCITYSADPYVPA*LICKEDQIVQEEDVRLGSIPWMNSGGTFIINGIARVLV 151
           ++ERDA Y+ ITYS++ YVPA LI +  + +QE+ V LG+IP MNS GT I+NGI R+++
Sbjct: 65  IKERDAVYESITYSSELYVPAGLIWRTGRNMQEQTVLLGNIPLMNSLGTSIVNGIYRIVI 124

Query: 150 SQILRSPGIYYNRESDQRGILAYTSTAISDQGGRFKLEIDGRNRIWVRIS 1
           +QIL+SPGIYY+   D  GI  YT T ISD GGR +LEID + RIW R+S
Sbjct: 125 NQILQSPGIYYSTGLDHNGISVYTGTIISDWGGRSELEIDRKERIWARVS 174


>sp|Q5QA72|RPOB_ACOGR DNA-directed RNA polymerase subunit beta
           OS=Acorus gramineus GN=rpoB PE=3 SV=1
          Length = 1071

 Score =  192 bits (487), Expect = 1e-48
 Identities = 94/169 (55%), Positives = 125/169 (73%)
 Frame = -3

Query: 507 GSGGMPVLPELAQIQFKGXSRFVHQKLLKELENFPKIEDTDKEVEF*SIGNQYQLTEPSL 328
           G+ GM  +P  +QIQF+G  RFV Q L++E   FPKIEDTD+E+EF     +YQL EP +
Sbjct: 5   GNEGMFTIPGFSQIQFEGFCRFVDQGLMEEFHKFPKIEDTDQEIEFQLFVERYQLVEPLI 64

Query: 327 EERDAAYQCITYSADPYVPA*LICKEDQIVQEEDVRLGSIPWMNSGGTFIINGIARVLVS 148
           +ERDA Y+ +TYS++ YVPA LI K  + +QE+ + +G+IP MNS GTFI+NGI R++++
Sbjct: 65  KERDAVYESLTYSSELYVPAGLIWKTGRDMQEQTIFIGNIPLMNSLGTFIVNGIYRIVIN 124

Query: 147 QILRSPGIYYNRESDQRGILAYTSTAISDQGGRFKLEIDGRNRIWVRIS 1
           QIL+SPGIYY  E D  GI  YTST ISD GGR +LEID ++RIW R+S
Sbjct: 125 QILQSPGIYYRSELDHNGISVYTSTIISDWGGRSELEIDRKSRIWARVS 173


>sp|Q3V542|RPOB_ACOCL DNA-directed RNA polymerase subunit beta
           OS=Acorus calamus GN=rpoB PE=3 SV=2
          Length = 1071

 Score =  191 bits (486), Expect = 2e-48
 Identities = 93/169 (55%), Positives = 125/169 (73%)
 Frame = -3

Query: 507 GSGGMPVLPELAQIQFKGXSRFVHQKLLKELENFPKIEDTDKEVEF*SIGNQYQLTEPSL 328
           G+ GM  +P  +QIQF+G  RF+ Q L++E   FPKIEDTD+E+EF     +YQL EP +
Sbjct: 5   GNEGMFTIPGFSQIQFEGFCRFIDQGLMEEFHKFPKIEDTDQEIEFQLFVERYQLVEPLI 64

Query: 327 EERDAAYQCITYSADPYVPA*LICKEDQIVQEEDVRLGSIPWMNSGGTFIINGIARVLVS 148
           +ERDA Y+ +TYS++ YVPA LI K  + +QE+ + +G+IP MNS GTFI+NGI R++++
Sbjct: 65  KERDAVYESLTYSSELYVPAGLIWKTGRDMQEQTIFIGNIPLMNSLGTFIVNGIYRIVIN 124

Query: 147 QILRSPGIYYNRESDQRGILAYTSTAISDQGGRFKLEIDGRNRIWVRIS 1
           QIL+SPGIYY  E D  GI  YTST ISD GGR +LEID ++RIW R+S
Sbjct: 125 QILQSPGIYYRSELDHNGISVYTSTIISDWGGRSELEIDRKSRIWARVS 173


>sp|A9LYH7|RPOB_ACOAM DNA-directed RNA polymerase subunit beta
           OS=Acorus americanus GN=rpoB PE=3 SV=1
          Length = 1083

 Score =  191 bits (486), Expect = 2e-48
 Identities = 93/169 (55%), Positives = 125/169 (73%)
 Frame = -3

Query: 507 GSGGMPVLPELAQIQFKGXSRFVHQKLLKELENFPKIEDTDKEVEF*SIGNQYQLTEPSL 328
           G+ GM  +P  +QIQF+G  RF+ Q L++E   FPKIEDTD+E+EF     +YQL EP +
Sbjct: 17  GNEGMFTIPGFSQIQFEGFCRFIDQGLMEEFHKFPKIEDTDQEIEFQLFVERYQLVEPLI 76

Query: 327 EERDAAYQCITYSADPYVPA*LICKEDQIVQEEDVRLGSIPWMNSGGTFIINGIARVLVS 148
           +ERDA Y+ +TYS++ YVPA LI K  + +QE+ + +G+IP MNS GTFI+NGI R++++
Sbjct: 77  KERDAVYESLTYSSELYVPAGLIWKTGRDMQEQTIFIGNIPLMNSLGTFIVNGIYRIVIN 136

Query: 147 QILRSPGIYYNRESDQRGILAYTSTAISDQGGRFKLEIDGRNRIWVRIS 1
           QIL+SPGIYY  E D  GI  YTST ISD GGR +LEID ++RIW R+S
Sbjct: 137 QILQSPGIYYRSELDHNGISVYTSTIISDWGGRSELEIDRKSRIWARVS 185
tr_hit_id A9QB24
Definition tr|A9QB24|A9QB24_9SPER DNA-directed RNA polymerase (Fragment) OS=Cycas micronesica
Align length 166
Score (bit) 203.0
E-value 7.0e-51
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945804|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_I01, 5'
         (596 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9QB24|A9QB24_9SPER DNA-directed RNA polymerase (Fragment) OS...   203   7e-51
tr|B0YPL8|B0YPL8_ANEMR DNA-directed RNA polymerase OS=Aneura mir...   201   3e-50
tr|Q4FFX6|Q4FFX6_NUPAD DNA-directed RNA polymerase (Fragment) OS...   193   7e-48
tr|Q4FFX8|Q4FFX8_ACOAM DNA-directed RNA polymerase (Fragment) OS...   191   2e-47
tr|A9QBJ3|A9QBJ3_MUSAC DNA-directed RNA polymerase (Fragment) OS...   190   6e-47
tr|Q4FFX5|Q4FFX5_RANMC DNA-directed RNA polymerase (Fragment) OS...   189   8e-47
tr|Q4FFX4|Q4FFX4_TYPLA DNA-directed RNA polymerase (Fragment) OS...   188   2e-46
tr|Q4FFX7|Q4FFX7_GINBI DNA-directed RNA polymerase (Fragment) OS...   186   7e-46
tr|B5LMM4|B5LMM4_CICAR RNA polymerase beta subunit OS=Cicer arie...   185   1e-45
tr|B8R4A8|B8R4A8_TRISU RNA polymerase beta subunit OS=Trifolium ...   183   6e-45
tr|B1A927|B1A927_CARPA DNA-directed RNA polymerase OS=Carica pap...   183   6e-45
tr|B1NWE2|B1NWE2_MANES DNA-directed RNA polymerase OS=Manihot es...   183   7e-45
tr|B7T3U3|B7T3U3_9ROSI RNA polymerase beta subunit OS=Monsonia s...   182   1e-44
tr|Q4FFX3|Q4FFX3_9ASPA DNA-directed RNA polymerase (Fragment) OS...   182   2e-44
tr|B5AH00|B5AH00_9ROSI RNA polymerase beta subunit OS=Gonystylus...   181   4e-44
tr|B7ZIN8|B7ZIN8_KETDA RNA polymerase beta chain OS=Keteleeria d...   180   6e-44
tr|A9QAU7|A9QAU7_9APIA DNA-directed RNA polymerase (Fragment) OS...   179   8e-44
tr|Q8MA34|Q8MA34_CUSRE DNA-directed RNA polymerase beta subunit ...   179   1e-43
tr|Q7YJ40|Q7YJ40_NICSY RNA polymerase beta subunit (Fragment) OS...   178   2e-43
tr|B0Z5C7|B0Z5C7_OENPA DNA-directed RNA polymerase OS=Oenothera ...   178   2e-43
tr|B0Z543|B0Z543_OENGL DNA-directed RNA polymerase OS=Oenothera ...   178   2e-43
tr|B0Z4M5|B0Z4M5_OENAR DNA-directed RNA polymerase OS=Oenothera ...   178   2e-43
tr|A9QBR7|A9QBR7_PASBI DNA-directed RNA polymerase (Fragment) OS...   178   2e-43
tr|A9QBA0|A9QBA0_ELAOL DNA-directed RNA polymerase (Fragment) OS...   178   2e-43
tr|B2XWP1|B2XWP1_FAGEA RNA polymerase beta subunit OS=Fagopyrum ...   177   3e-43
tr|B0Z4V9|B0Z4V9_OENBI DNA-directed RNA polymerase OS=Oenothera ...   177   3e-43
tr|B2ZE99|B2ZE99_9POAL RNA polymerase beta subunit OS=Phyllostac...   176   1e-42
tr|B7T414|B7T414_9ROSI RNA polymerase beta subunit OS=Monsonia v...   175   2e-42
tr|B8Y2W4|B8Y2W4_FESAR RNA polymerase beta subunit OS=Festuca ar...   175   2e-42
tr|Q0DJF2|Q0DJF2_ORYSJ Os05g0293600 protein OS=Oryza sativa subs...   174   3e-42

>tr|A9QB24|A9QB24_9SPER DNA-directed RNA polymerase (Fragment)
           OS=Cycas micronesica GN=rpoB PE=3 SV=1
          Length = 1066

 Score =  203 bits (516), Expect = 7e-51
 Identities = 95/166 (57%), Positives = 129/166 (77%)
 Frame = -3

Query: 498 GMPVLPELAQIQFKGXSRFVHQKLLKELENFPKIEDTDKEVEF*SIGNQYQLTEPSLEER 319
           G   +PE  +IQF+G  RF+ Q L++EL+NFPKIEDTD+E+E    GN+Y+L EP ++ER
Sbjct: 8   GTSTIPEFGKIQFEGFCRFIDQGLIEELQNFPKIEDTDQEIESQLFGNKYELAEPLIKER 67

Query: 318 DAAYQCITYSADPYVPA*LICKEDQIVQEEDVRLGSIPWMNSGGTFIINGIARVLVSQIL 139
           +A YQ +TYS++ YVPA LI +  + +Q++ V +G++P MNS GTF++NGI+R++V+QIL
Sbjct: 68  NAVYQSLTYSSELYVPARLIQRNSRKIQKQTVLIGNLPLMNSQGTFVVNGISRIVVNQIL 127

Query: 138 RSPGIYYNRESDQRGILAYTSTAISDQGGRFKLEIDGRNRIWVRIS 1
           RSPGIYY+ E DQ GI  YTST ISD GGR KLEIDG+ RIW R+S
Sbjct: 128 RSPGIYYSSEPDQSGITLYTSTIISDWGGRSKLEIDGKTRIWARVS 173


>tr|B0YPL8|B0YPL8_ANEMR DNA-directed RNA polymerase OS=Aneura
           mirabilis GN=rpoB PE=3 SV=1
          Length = 1065

 Score =  201 bits (511), Expect = 3e-50
 Identities = 99/163 (60%), Positives = 126/163 (77%)
 Frame = -3

Query: 489 VLPELAQIQFKGXSRFVHQKLLKELENFPKIEDTDKEVEF*SIGNQYQLTEPSLEERDAA 310
           VLPE  +IQF+G +RF+ Q L +EL NFPKIEDT++E++F   G++Y LTEP  EE++A 
Sbjct: 5   VLPEFGRIQFEGFNRFITQGLSEELTNFPKIEDTERELQFRIFGDEYILTEPLFEEKNAV 64

Query: 309 YQCITYSADPYVPA*LICKEDQIVQEEDVRLGSIPWMNSGGTFIINGIARVLVSQILRSP 130
           YQ +TYS+D YVPA L+ +    V+ + V LGSIP MNS GTFI+NGIARV+V+QILRSP
Sbjct: 65  YQSVTYSSDLYVPARLLYRRGGEVRRQTVFLGSIPLMNSQGTFIVNGIARVIVNQILRSP 124

Query: 129 GIYYNRESDQRGILAYTSTAISDQGGRFKLEIDGRNRIWVRIS 1
           GIYYN ESD+ G+  YT T IS+ GGR KLEIDG+ R+W RIS
Sbjct: 125 GIYYNSESDRNGVSVYTGTFISNWGGRLKLEIDGKARVWARIS 167


>tr|Q4FFX6|Q4FFX6_NUPAD DNA-directed RNA polymerase (Fragment)
           OS=Nuphar advena GN=rpoB PE=3 SV=1
          Length = 1071

 Score =  193 bits (490), Expect = 7e-48
 Identities = 95/170 (55%), Positives = 122/170 (71%)
 Frame = -3

Query: 510 GGSGGMPVLPELAQIQFKGXSRFVHQKLLKELENFPKIEDTDKEVEF*SIGNQYQLTEPS 331
           GG  GM  +P  +QIQF+G  RF+ Q L++EL  FPKIEDTD+E+EF   G  YQL EP 
Sbjct: 5   GGDEGMFTIPGFSQIQFEGFCRFIDQGLMEELHQFPKIEDTDQEIEFKLFGESYQLVEPL 64

Query: 330 LEERDAAYQCITYSADPYVPA*LICKEDQIVQEEDVRLGSIPWMNSGGTFIINGIARVLV 151
           ++ERDA Y+ ITYS++ YVPA LI +  + +QE+ V LG+IP MNS GT I+NGI R+++
Sbjct: 65  IKERDAVYESITYSSELYVPAGLIWRTGRNMQEQTVLLGNIPLMNSSGTSIVNGIYRIVI 124

Query: 150 SQILRSPGIYYNRESDQRGILAYTSTAISDQGGRFKLEIDGRNRIWVRIS 1
           +QIL+SPGIYY    D  GI  YT T ISD GGR +LEID + RIW R+S
Sbjct: 125 NQILQSPGIYYGTGLDHNGISVYTGTIISDWGGRSELEIDRKERIWARVS 174


>tr|Q4FFX8|Q4FFX8_ACOAM DNA-directed RNA polymerase (Fragment)
           OS=Acorus americanus GN=rpoB PE=3 SV=1
          Length = 1068

 Score =  191 bits (486), Expect = 2e-47
 Identities = 93/169 (55%), Positives = 125/169 (73%)
 Frame = -3

Query: 507 GSGGMPVLPELAQIQFKGXSRFVHQKLLKELENFPKIEDTDKEVEF*SIGNQYQLTEPSL 328
           G+ GM  +P  +QIQF+G  RF+ Q L++E   FPKIEDTD+E+EF     +YQL EP +
Sbjct: 2   GNEGMFTIPGFSQIQFEGFCRFIDQGLMEEFHKFPKIEDTDQEIEFQLFVERYQLVEPLI 61

Query: 327 EERDAAYQCITYSADPYVPA*LICKEDQIVQEEDVRLGSIPWMNSGGTFIINGIARVLVS 148
           +ERDA Y+ +TYS++ YVPA LI K  + +QE+ + +G+IP MNS GTFI+NGI R++++
Sbjct: 62  KERDAVYESLTYSSELYVPAGLIWKTGRDMQEQTIFIGNIPLMNSLGTFIVNGIYRIVIN 121

Query: 147 QILRSPGIYYNRESDQRGILAYTSTAISDQGGRFKLEIDGRNRIWVRIS 1
           QIL+SPGIYY  E D  GI  YTST ISD GGR +LEID ++RIW R+S
Sbjct: 122 QILQSPGIYYRSELDHNGISVYTSTIISDWGGRSELEIDRKSRIWARVS 170


>tr|A9QBJ3|A9QBJ3_MUSAC DNA-directed RNA polymerase (Fragment)
           OS=Musa acuminata GN=rpoB PE=3 SV=1
          Length = 1070

 Score =  190 bits (482), Expect = 6e-47
 Identities = 93/169 (55%), Positives = 123/169 (72%)
 Frame = -3

Query: 507 GSGGMPVLPELAQIQFKGXSRFVHQKLLKELENFPKIEDTDKEVEF*SIGNQYQLTEPSL 328
           G+ GM  +P  +QIQF+G  RF+++ L +E   FPKIEDTD+E+EF     +YQL EP +
Sbjct: 2   GNEGMSTIPGFSQIQFEGFCRFINEGLTEEFHKFPKIEDTDQEIEFKLFVERYQLVEPLI 61

Query: 327 EERDAAYQCITYSADPYVPA*LICKEDQIVQEEDVRLGSIPWMNSGGTFIINGIARVLVS 148
            ERDA Y+ +TYS++ YVPA LI K  + +QE+ V +G+IP MNS GTFI+NGI R++++
Sbjct: 62  NERDAVYESLTYSSELYVPAGLIWKTGRDMQEQTVFIGNIPLMNSLGTFIVNGIYRIVIN 121

Query: 147 QILRSPGIYYNRESDQRGILAYTSTAISDQGGRFKLEIDGRNRIWVRIS 1
           QIL+SPGIYY  E D  GI  YTST ISD GGR +LEID + RIW R+S
Sbjct: 122 QILQSPGIYYRSELDHNGISVYTSTIISDWGGRSELEIDRKARIWARVS 170


>tr|Q4FFX5|Q4FFX5_RANMC DNA-directed RNA polymerase (Fragment)
           OS=Ranunculus macranthus GN=rpoB PE=3 SV=1
          Length = 1070

 Score =  189 bits (481), Expect = 8e-47
 Identities = 94/169 (55%), Positives = 119/169 (70%)
 Frame = -3

Query: 507 GSGGMPVLPELAQIQFKGXSRFVHQKLLKELENFPKIEDTDKEVEF*SIGNQYQLTEPSL 328
           G+ GM  +P  +QIQF+G  RF+ Q L +EL  FPKIEDTD+E+EF      YQL EP +
Sbjct: 5   GNQGMSTIPGFSQIQFEGFCRFIDQGLAEELSKFPKIEDTDQEIEFQLFVETYQLVEPLI 64

Query: 327 EERDAAYQCITYSADPYVPA*LICKEDQIVQEEDVRLGSIPWMNSGGTFIINGIARVLVS 148
            ERDA Y+ +TYS++ YVPA LI K  +  QE+ + +G IP MNS GTFIINGI R++++
Sbjct: 65  NERDAVYESLTYSSELYVPAGLIWKNGRDTQEQTIFIGKIPLMNSFGTFIINGIYRIVIN 124

Query: 147 QILRSPGIYYNRESDQRGILAYTSTAISDQGGRFKLEIDGRNRIWVRIS 1
           QIL+SPGIYY  E D  GI  YT T ISD GGR +LEID + RIW R+S
Sbjct: 125 QILQSPGIYYRSELDHNGISVYTGTIISDWGGRSELEIDRKARIWARVS 173


>tr|Q4FFX4|Q4FFX4_TYPLA DNA-directed RNA polymerase (Fragment)
           OS=Typha latifolia GN=rpoB PE=3 SV=1
          Length = 1072

 Score =  188 bits (478), Expect = 2e-46
 Identities = 93/169 (55%), Positives = 123/169 (72%)
 Frame = -3

Query: 507 GSGGMPVLPELAQIQFKGXSRFVHQKLLKELENFPKIEDTDKEVEF*SIGNQYQLTEPSL 328
           G+ GM  +P  +QIQF+G  RF++Q L  E + FPKIEDTD+E+EF     +YQL EP +
Sbjct: 5   GNEGMSTIPGFSQIQFEGFCRFINQGLTAEFQKFPKIEDTDQEIEFKLFVERYQLVEPLI 64

Query: 327 EERDAAYQCITYSADPYVPA*LICKEDQIVQEEDVRLGSIPWMNSGGTFIINGIARVLVS 148
           +ERDA Y+ +TYS++ YVPA LI K  + +QE+ V +G+IP MNS GT I+NGI R++++
Sbjct: 65  KERDAVYESLTYSSELYVPAGLIWKTGRDMQEQTVFIGNIPLMNSLGTSIVNGIYRIVIN 124

Query: 147 QILRSPGIYYNRESDQRGILAYTSTAISDQGGRFKLEIDGRNRIWVRIS 1
           QIL+SPGIYY  E D  GI  YTST ISD GGR +LEID + RIW R+S
Sbjct: 125 QILQSPGIYYRSELDHNGISVYTSTIISDWGGRSELEIDRKARIWARVS 173


>tr|Q4FFX7|Q4FFX7_GINBI DNA-directed RNA polymerase (Fragment)
           OS=Ginkgo biloba GN=rpoB PE=3 SV=1
          Length = 1072

 Score =  186 bits (473), Expect = 7e-46
 Identities = 92/166 (55%), Positives = 120/166 (72%)
 Frame = -3

Query: 498 GMPVLPELAQIQFKGXSRFVHQKLLKELENFPKIEDTDKEVEF*SIGNQYQLTEPSLEER 319
           G   +P   QIQF+G  RF+ Q L++EL NFP+IE TD+E+E    G +Y+  EP +EER
Sbjct: 8   GTSTIPGFGQIQFEGFCRFIDQGLIEELSNFPEIEYTDQEIESRLSGKKYKSAEPLIEER 67

Query: 318 DAAYQCITYSADPYVPA*LICKEDQIVQEEDVRLGSIPWMNSGGTFIINGIARVLVSQIL 139
           +A YQ +TYS++ YVPA LI K  + +Q++ V LG+IP MNS GTF++NGI+R++V QIL
Sbjct: 68  NAVYQSLTYSSELYVPARLIQKNRRKIQKQTVFLGNIPLMNSRGTFVVNGISRIVVDQIL 127

Query: 138 RSPGIYYNRESDQRGILAYTSTAISDQGGRFKLEIDGRNRIWVRIS 1
           RSPGIYY+ E    GI  YT T ISD GGR KLEIDG+ RIW R+S
Sbjct: 128 RSPGIYYSSEPGHNGIAIYTGTIISDWGGRPKLEIDGKTRIWARVS 173


>tr|B5LMM4|B5LMM4_CICAR RNA polymerase beta subunit OS=Cicer
           arietinum GN=rpoB PE=4 SV=1
          Length = 1070

 Score =  185 bits (470), Expect = 1e-45
 Identities = 91/169 (53%), Positives = 123/169 (72%)
 Frame = -3

Query: 507 GSGGMPVLPELAQIQFKGXSRFVHQKLLKELENFPKIEDTDKEVEF*SIGNQYQLTEPSL 328
           G+ GM  LP L QIQF+G SRF+ + L +EL  FPKIEDTD+E+EF      YQL EP++
Sbjct: 5   GNEGMSTLPGLNQIQFEGFSRFIDRGLTEELLKFPKIEDTDQEIEFQLFVETYQLVEPAI 64

Query: 327 EERDAAYQCITYSADPYVPA*LICKEDQIVQEEDVRLGSIPWMNSGGTFIINGIARVLVS 148
           +E+DA Y+ +TYS++ Y+ A LI K  + +QE+ + +G+IP MNS GT I+NGI R++++
Sbjct: 65  KEKDAVYESLTYSSELYISAGLIWKNSRDIQEQIIFIGNIPLMNSLGTSIVNGIYRIVIN 124

Query: 147 QILRSPGIYYNRESDQRGILAYTSTAISDQGGRFKLEIDGRNRIWVRIS 1
           QIL+SPGIYY  E D  GI  YT+T ISD GGR +LEID + RIW R+S
Sbjct: 125 QILQSPGIYYRSELDHNGISVYTATIISDWGGRLELEIDRKARIWARVS 173


>tr|B8R4A8|B8R4A8_TRISU RNA polymerase beta subunit OS=Trifolium
           subterraneum GN=rpoB PE=4 SV=1
          Length = 1070

 Score =  183 bits (465), Expect = 6e-45
 Identities = 90/169 (53%), Positives = 121/169 (71%)
 Frame = -3

Query: 507 GSGGMPVLPELAQIQFKGXSRFVHQKLLKELENFPKIEDTDKEVEF*SIGNQYQLTEPSL 328
           G+ GM  LP L QIQF+G  RF+ + L +EL  FPK+EDTD+E+EF      YQL EPS+
Sbjct: 5   GNEGMSTLPGLNQIQFEGFCRFIDRGLTEELLKFPKVEDTDQEIEFQLFVETYQLVEPSI 64

Query: 327 EERDAAYQCITYSADPYVPA*LICKEDQIVQEEDVRLGSIPWMNSGGTFIINGIARVLVS 148
           +E+DA Y+ +TYS++ Y+ A LI K    +QE+ + +G+IP MNS GT I+NGI RV+++
Sbjct: 65  KEKDAVYESLTYSSEFYISAGLIWKNSSAIQEQIIFIGNIPLMNSLGTSIVNGIYRVVIN 124

Query: 147 QILRSPGIYYNRESDQRGILAYTSTAISDQGGRFKLEIDGRNRIWVRIS 1
           QIL+SPGIYY  E D  GI  YT+T ISD GGR +LE+D + RIW R+S
Sbjct: 125 QILQSPGIYYRSELDHNGISVYTATIISDWGGRLELEMDRKARIWARVS 173