DK945811 |
Clone id |
YMU02A01NGRL0010_I08 |
Library |
YMU02 |
Length |
597 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_I08. 5' end sequence. |
Accession |
DK945811 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL4168Contig1 |
Sequence |
AGCTGGAGCACTATTATGAGGTTGACAGAGAGGCCAAAAGAATACTGGAGGCATGTTACA GTCGAGCACAAAAGATTGTGGAAAGGAATGAAGTGCTGATAAAGGAGTTGGCGGATCTCT TGATGGATGCCAAAGTTGTGAAGAAAGAGGATTTCTGGATACTGGCGGAGCAACACGGCA ACTTTCTAGAGCTTCCCCCTCTACTTGTGGATATTCGCCGAAAGAAGCTAGAAGAGTTTA GAGAGCAAATGATTACGGAGAAAAGGGCAGTTTTGCCGTAACGATAAGACAAAAGAATCT AGGTACACAATTTTTGTAGCAGGAACGTAAACCCCACTTTGGATCGGGCGGAGCAACAGG CAGCTGAGAGTCGGTGTCGATAACTAGCATGTTTTTCTGAAGAGGGCAGTTGGGTGGCCC TTATTTCAGAAGATGGATGCAGACATGAGCAGGGTGCATATGTACTGTAGCCTGCTGATA CAAGGGAACTTCTCATGGAAAACAGCTCANATCATTGCCCCAATTAAGAGGGCTACTAGC TTTGGGGTGCTTGGAAGTGGTAGTTTGGAATAAGTTGTTTAGGTCTACAGAGTTCCT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P51327 |
Definition |
sp|P51327|FTSH_PORPU Cell division protease ftsH homolog OS=Porphyra purpurea |
Align length |
52 |
Score (bit) |
41.2 |
E-value |
0.004 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK945811|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0010_I08, 5' (597 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P51327|FTSH_PORPU Cell division protease ftsH homolog OS=Porp... 41 0.004 sp|P73179|FTSH2_SYNY3 Cell division protease ftsH homolog 2 OS=S... 41 0.005 sp|Q1XDF9|FSTH_PORYE Cell division protease ftsH homolog OS=Porp... 39 0.020 sp|P37476|FTSH_BACSU Cell division protease ftsH homolog OS=Baci... 39 0.026 sp|O78516|FTSH_GUITH Cell division protease ftsH homolog OS=Guil... 37 0.058 sp|Q5Z974|FTSH1_ORYSJ Cell division protease ftsH homolog 1, chl... 37 0.058 sp|Q9BAE0|FTSH_MEDSA Cell division protease ftsH homolog, chloro... 35 0.37 sp|O82150|FTSH_TOBAC Cell division protease ftsH homolog, chloro... 34 0.49 sp|P94304|FTSH_BACPF Cell division protease ftsH homolog OS=Baci... 34 0.49 sp|Q39102|FTSH1_ARATH Cell division protease ftsH homolog 1, chl... 34 0.49 sp|P49825|FTSH_ODOSI Cell division protease ftsH homolog OS=Odon... 33 0.83 sp|O67077|FTSH_AQUAE Cell division protease ftsH homolog OS=Aqui... 33 1.1 sp|Q6AXT4|CJ096_RAT UPF0628 protein C10orf96 homolog OS=Rattus n... 32 1.9 sp|Q8NAB5|YC005_HUMAN Putative uncharacterized protein FLJ35645 ... 32 2.4 sp|Q55700|FTSH1_SYNY3 Cell division protease ftsH homolog 1 OS=S... 32 2.4 sp|Q9NQ11|AT132_HUMAN Probable cation-transporting ATPase 13A2 O... 32 2.5 sp|A2A8T7|CA223_MOUSE Uncharacterized protein C1orf223 homolog O... 31 4.2 sp|Q98PE4|FTSH_MYCPU Cell division protease ftsH homolog OS=Myco... 31 5.4 sp|Q810N9|CJ096_MOUSE UPF0628 protein C10orf96 homolog OS=Mus mu... 31 5.4 sp|Q63618|ESPN_RAT Espin OS=Rattus norvegicus GN=Espn PE=1 SV=2 30 7.1 sp|Q9ET47|ESPN_MOUSE Espin OS=Mus musculus GN=Espn PE=1 SV=2 30 7.1 sp|Q47YH9|ZIPA_COLP3 Cell division protein zipA homolog OS=Colwe... 30 7.1 sp|Q76KD6|SPERI_HUMAN Speriolin OS=Homo sapiens GN=SPATC1 PE=2 SV=2 30 7.1 sp|Q74ZX0|CSF1_ASHGO Protein CSF1 OS=Ashbya gossypii GN=CSF1 PE=... 30 7.1 sp|P0C7P5|BNP_TRIFL Bradykinin-potentiating and C-type natriuret... 30 7.1
>sp|P51327|FTSH_PORPU Cell division protease ftsH homolog OS=Porphyra purpurea GN=ftsH PE=3 SV=1 Length = 628
Score = 41.2 bits (95), Expect = 0.004 Identities = 15/52 (28%), Positives = 34/52 (65%) Frame = +3
Query: 21 VDREAKRILEACYSRAQKIVERNEVLIKELADLLMDAKVVKKEDFWILAEQH 176 +D++ + I+ CY A+KIV+ N V++ L DLL++ + ++ +F + +++ Sbjct: 564 IDKQVREIVSECYKEAKKIVKDNRVVMDRLVDLLIEKETIEGNEFRHIVKEY 615
>sp|P73179|FTSH2_SYNY3 Cell division protease ftsH homolog 2 OS=Synechocystis sp. (strain PCC 6803) GN=slr1390 PE=3 SV=1 Length = 665
Score = 40.8 bits (94), Expect = 0.005 Identities = 21/61 (34%), Positives = 34/61 (55%) Frame = +3
Query: 21 VDREAKRILEACYSRAQKIVERNEVLIKELADLLMDAKVVKKEDFWILAEQHGNFLELPP 200 +DRE + I+ A + RA +I+E N L+ L D L+D + ++ E F L E + + P Sbjct: 602 IDREIQAIVTAAHQRATRIIEENRNLMDLLVDALIDQETIEGEHFRQLVESYQQSQKQPA 661
Query: 201 L 203 L Sbjct: 662 L 662
>sp|Q1XDF9|FSTH_PORYE Cell division protease ftsH homolog OS=Porphyra yezoensis GN=ftsH PE=3 SV=1 Length = 628
Score = 38.9 bits (89), Expect = 0.020 Identities = 14/52 (26%), Positives = 34/52 (65%) Frame = +3
Query: 21 VDREAKRILEACYSRAQKIVERNEVLIKELADLLMDAKVVKKEDFWILAEQH 176 +D++ + I+ CY++A+ I+ N V+I L DLL++ + ++ +F + +++ Sbjct: 564 IDKQVREIVSECYAQAKHIIIDNRVVIDRLVDLLIEKETIEGNEFRDIVKEY 615
>sp|P37476|FTSH_BACSU Cell division protease ftsH homolog OS=Bacillus subtilis GN=ftsH PE=3 SV=1 Length = 637
Score = 38.5 bits (88), Expect = 0.026 Identities = 19/59 (32%), Positives = 34/59 (57%) Frame = +3
Query: 15 YEVDREAKRILEACYSRAQKIVERNEVLIKELADLLMDAKVVKKEDFWILAEQHGNFLE 191 YE+D+E +RI++ CY RA++I+ N ++ +A L+ + + E L + HG E Sbjct: 551 YEIDQEIQRIIKECYERAKQILTENRDKLELIAQTLLKVETLDAEQIKHLID-HGTLPE 608
>sp|O78516|FTSH_GUITH Cell division protease ftsH homolog OS=Guillardia theta GN=ftsH PE=3 SV=1 Length = 631
Score = 37.4 bits (85), Expect = 0.058 Identities = 16/59 (27%), Positives = 36/59 (61%) Frame = +3
Query: 21 VDREAKRILEACYSRAQKIVERNEVLIKELADLLMDAKVVKKEDFWILAEQHGNFLELP 197 +D + + I++ C++ +I++ N V+I +L DLL++ + + ++F + G+F LP Sbjct: 564 IDMQVRAIIQHCHTETVQIIKDNRVVIDKLVDLLIEKETIDGDEFRQIV---GDFTSLP 619
>sp|Q5Z974|FTSH1_ORYSJ Cell division protease ftsH homolog 1, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH1 PE=2 SV=1 Length = 686
Score = 37.4 bits (85), Expect = 0.058 Identities = 18/48 (37%), Positives = 30/48 (62%) Frame = +3
Query: 21 VDREAKRILEACYSRAQKIVERNEVLIKELADLLMDAKVVKKEDFWIL 164 VD E + ++E YSRA +I+ + ++ +LA LLM+ + V E+F L Sbjct: 628 VDAEVRELVEKAYSRATQIITTHIDILHKLAQLLMEKETVDGEEFMSL 675
>sp|Q9BAE0|FTSH_MEDSA Cell division protease ftsH homolog, chloroplastic OS=Medicago sativa GN=FTSH PE=2 SV=1 Length = 706
Score = 34.7 bits (78), Expect = 0.37 Identities = 15/48 (31%), Positives = 30/48 (62%) Frame = +3
Query: 21 VDREAKRILEACYSRAQKIVERNEVLIKELADLLMDAKVVKKEDFWIL 164 VD+E + +++ Y RA +I+ + ++ +LA LL++ + V E+F L Sbjct: 648 VDKEVRELVDKAYERATQIINTHIDILHKLAQLLIEKETVDGEEFMSL 695
>sp|O82150|FTSH_TOBAC Cell division protease ftsH homolog, chloroplastic OS=Nicotiana tabacum GN=FTSH PE=2 SV=2 Length = 714
Score = 34.3 bits (77), Expect = 0.49 Identities = 16/48 (33%), Positives = 29/48 (60%) Frame = +3
Query: 21 VDREAKRILEACYSRAQKIVERNEVLIKELADLLMDAKVVKKEDFWIL 164 VD E + ++E Y RA +I+ + ++ +LA LL++ + V E+F L Sbjct: 649 VDAEVRELVERAYERATEIITTHIDILHKLAQLLIEKETVDGEEFMSL 696
>sp|P94304|FTSH_BACPF Cell division protease ftsH homolog OS=Bacillus pseudofirmus GN=ftsH PE=3 SV=1 Length = 679
Score = 34.3 bits (77), Expect = 0.49 Identities = 15/53 (28%), Positives = 31/53 (58%) Frame = +3
Query: 15 YEVDREAKRILEACYSRAQKIVERNEVLIKELADLLMDAKVVKKEDFWILAEQ 173 +E+D E +RI++ CY+R ++I+ N+ + +A L+D + + E L + Sbjct: 556 HEIDLEVQRIIKECYARCKQILLENKDSLDLVAKTLLDMETLDAEQIKSLVHE 608
>sp|Q39102|FTSH1_ARATH Cell division protease ftsH homolog 1, chloroplastic OS=Arabidopsis thaliana GN=FTSH1 PE=1 SV=2 Length = 716
Score = 34.3 bits (77), Expect = 0.49 Identities = 16/48 (33%), Positives = 29/48 (60%) Frame = +3
Query: 21 VDREAKRILEACYSRAQKIVERNEVLIKELADLLMDAKVVKKEDFWIL 164 VD E + ++E Y RA +I+ + ++ +LA LL++ + V E+F L Sbjct: 658 VDAEVRELVEKAYKRATEIITTHIDILHKLAQLLIEKETVDGEEFMSL 705
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7P762 |
Definition |
tr|A7P762|A7P762_VITVI Chromosome chr9 scaffold_7, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
86 |
Score (bit) |
73.2 |
E-value |
1.0e-11 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK945811|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0010_I08, 5' (597 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7P762|A7P762_VITVI Chromosome chr9 scaffold_7, whole genome ... 73 1e-11 tr|A9SCI8|A9SCI8_PHYPA Predicted protein OS=Physcomitrella paten... 63 1e-08 tr|A8MPR5|A8MPR5_ARATH Uncharacterized protein At3g16290.1 OS=Ar... 62 2e-08 tr|Q3AFJ8|Q3AFJ8_CARHZ Cell division protein FtsH OS=Carboxydoth... 46 0.001 tr|Q9ZGE1|Q9ZGE1_HELMO ATP-dependent zinc metallopeptidase FtsH ... 45 0.002 tr|B6FPP8|B6FPP8_9CLOT Putative uncharacterized protein OS=Clost... 45 0.003 tr|B0NEV6|B0NEV6_EUBSP Putative uncharacterized protein OS=Clost... 44 0.005 tr|B3PLQ3|B3PLQ3_CELJU Cell division protein FtsH OS=Cellvibrio ... 44 0.007 tr|Q251Q2|Q251Q2_DESHY Putative uncharacterized protein OS=Desul... 44 0.009 tr|A6BI46|A6BI46_9FIRM Putative uncharacterized protein OS=Dorea... 44 0.009 tr|Q6B8Y9|Q6B8Y9_GRATL FtsH protease homolog OS=Gracilaria tenui... 44 0.009 tr|B8FZD0|B8FZD0_DESHD ATP-dependent metalloprotease FtsH OS=Des... 43 0.016 tr|A3XG20|A3XG20_9FLAO Putative transmembrane AAA-metalloproteas... 43 0.016 tr|Q2JQW6|Q2JQW6_SYNJA Metalloprotease, ATP-dependent, FtsH fami... 42 0.020 tr|Q10ZF7|Q10ZF7_TRIEI FtsH peptidase homologue, chloroplast. Me... 42 0.020 tr|Q1VXE4|Q1VXE4_9FLAO Putative transmembrane AAA-metalloproteas... 42 0.020 tr|B7JX36|B7JX36_SYNP8 ATP-dependent metalloprotease FtsH OS=Syn... 42 0.020 tr|B4C2Y2|B4C2Y2_9CHRO ATP-dependent metalloprotease FtsH OS=Cya... 42 0.020 tr|Q0VSS8|Q0VSS8_ALCBS Cell division protein FtsH OS=Alcanivorax... 42 0.027 tr|B0CEU6|B0CEU6_ACAM1 ATP-dependent metalloprotease FtsH-like p... 42 0.027 tr|Q26BJ7|Q26BJ7_9BACT AAA-metalloprotease FtsH OS=Flavobacteria... 42 0.027 tr|A4CPA1|A4CPA1_9FLAO Putative transmembrane AAA-metalloproteas... 42 0.027 tr|B7T1V0|B7T1V0_VAULI Putative cell division protein FtsH OS=Va... 42 0.027 tr|B5CNR4|B5CNR4_9FIRM Putative uncharacterized protein OS=Rumin... 42 0.035 tr|A3IKL7|A3IKL7_9CHRO Cell division protein; FtsH OS=Cyanothece... 41 0.046 tr|Q2JHR8|Q2JHR8_SYNJB Metalloprotease, ATP-dependent, FtsH fami... 41 0.059 tr|A7Z0J2|A7Z0J2_BACA2 FtsH OS=Bacillus amyloliquefaciens (strai... 41 0.059 tr|B7BS18|B7BS18_9CLOT Putative uncharacterized protein OS=Clost... 41 0.059 tr|B0G9E6|B0G9E6_9FIRM Putative uncharacterized protein OS=Dorea... 41 0.059 tr|A7B667|A7B667_RUMGN Putative uncharacterized protein OS=Rumin... 41 0.059
>tr|A7P762|A7P762_VITVI Chromosome chr9 scaffold_7, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00034338001 PE=4 SV=1 Length = 830
Score = 73.2 bits (178), Expect = 1e-11 Identities = 33/86 (38%), Positives = 59/86 (68%) Frame = +3
Query: 18 EVDREAKRILEACYSRAQKIVERNEVLIKELADLLMDAKVVKKEDFWILAEQHGNFLELP 197 ++D EA RILE CY RA++I+++N L+ + D L+ K + K++F+ L E HG+ +P Sbjct: 741 DIDLEALRILEVCYERAKEILKQNRKLMDAVVDELVQKKSLTKQEFFRLVEVHGSLKPMP 800
Query: 198 PLLVDIRRKKLEEFREQMITEKRAVL 275 P ++DIR K +F+E+M++++ A + Sbjct: 801 PNILDIRAAKRIQFQERMMSQREAAV 826
>tr|A9SCI8|A9SCI8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_210834 PE=4 SV=1 Length = 802
Score = 62.8 bits (151), Expect = 1e-08 Identities = 31/89 (34%), Positives = 52/89 (58%) Frame = +3
Query: 6 EHYYEVDREAKRILEACYSRAQKIVERNEVLIKELADLLMDAKVVKKEDFWILAEQHGNF 185 E VD EA +I+ CY R + ++RN L+ ++ + L+ +V+++ +F L +GN Sbjct: 712 ESVQSVDVEALKIVNQCYDRVLEYLKRNRTLVNKMVEALVKDRVIRQVEFSQLVSTYGNL 771
Query: 186 LELPPLLVDIRRKKLEEFREQMITEKRAV 272 P V+IR + L F+E MITEKR++ Sbjct: 772 DPPPSTPVEIRDRSLAAFQEAMITEKRSI 800
>tr|A8MPR5|A8MPR5_ARATH Uncharacterized protein At3g16290.1 OS=Arabidopsis thaliana GN=At3g16290 PE=4 SV=1 Length = 876
Score = 62.0 bits (149), Expect = 2e-08 Identities = 28/79 (35%), Positives = 51/79 (64%) Frame = +3
Query: 18 EVDREAKRILEACYSRAQKIVERNEVLIKELADLLMDAKVVKKEDFWILAEQHGNFLELP 197 ++D EA RIL CY RA++I+ RN L+ E+ + L+ K + K++F+ L E +G+ +P Sbjct: 787 DIDVEALRILNMCYERAKEILGRNRTLMDEVVEKLVQKKSLTKQEFFTLVELYGSSKPMP 846
Query: 198 PLLVDIRRKKLEEFREQMI 254 P ++++R+ K E E ++ Sbjct: 847 PSILELRKIKRLELEEMVL 865
>tr|Q3AFJ8|Q3AFJ8_CARHZ Cell division protein FtsH OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=ftsH PE=4 SV=1 Length = 619
Score = 46.2 bits (108), Expect = 0.001 Identities = 18/55 (32%), Positives = 41/55 (74%) Frame = +3
Query: 15 YEVDREAKRILEACYSRAQKIVERNEVLIKELADLLMDAKVVKKEDFWILAEQHG 179 Y +D+E ++I+++CYSRA++I+++N ++ +A LM+ + ++ E+F L +++G Sbjct: 547 YTIDKEVRKIIDSCYSRAEEILKKNINVLHLVATKLMEVETMEGEEFEKLMKENG 601
>tr|Q9ZGE1|Q9ZGE1_HELMO ATP-dependent zinc metallopeptidase FtsH OS=Heliobacillus mobilis GN=ftsH PE=4 SV=1 Length = 601
Score = 45.4 bits (106), Expect = 0.002 Identities = 18/47 (38%), Positives = 32/47 (68%) Frame = +3
Query: 15 YEVDREAKRILEACYSRAQKIVERNEVLIKELADLLMDAKVVKKEDF 155 + +D+EA+RI+E CY +A+KI+E N + +A LMD + ++ +F Sbjct: 547 FSIDKEARRIIEECYGKAKKILESNADKLHLIAQTLMDKETIEASEF 593
>tr|B6FPP8|B6FPP8_9CLOT Putative uncharacterized protein OS=Clostridium nexile DSM 1787 GN=CLONEX_02115 PE=4 SV=1 Length = 605
Score = 45.1 bits (105), Expect = 0.003 Identities = 16/52 (30%), Positives = 38/52 (73%) Frame = +3
Query: 18 EVDREAKRILEACYSRAQKIVERNEVLIKELADLLMDAKVVKKEDFWILAEQ 173 ++DRE K+I++ CY+ A++I+++ +++ ADLL++ + + +E+F L ++ Sbjct: 549 KIDREVKKIIDECYANAKEIIQKYNHVLESCADLLLEKEKITREEFSALFDE 600
>tr|B0NEV6|B0NEV6_EUBSP Putative uncharacterized protein OS=Clostridium scindens ATCC 35704 GN=CLOSCI_01995 PE=4 SV=1 Length = 614
Score = 44.3 bits (103), Expect = 0.005 Identities = 16/45 (35%), Positives = 34/45 (75%) Frame = +3
Query: 21 VDREAKRILEACYSRAQKIVERNEVLIKELADLLMDAKVVKKEDF 155 +D+E KRI++ CYSRA+ I+++ + ++ A+LL++ + + +E+F Sbjct: 559 IDQEVKRIIDECYSRARHIIKKYDDVLHSCAELLLEKEKISREEF 603
>tr|B3PLQ3|B3PLQ3_CELJU Cell division protein FtsH OS=Cellvibrio japonicus (strain Ueda107) GN=ftsH PE=4 SV=1 Length = 637
Score = 43.9 bits (102), Expect = 0.007 Identities = 17/43 (39%), Positives = 31/43 (72%) Frame = +3
Query: 21 VDREAKRILEACYSRAQKIVERNEVLIKELADLLMDAKVVKKE 149 +D E +RI++ACY+RA+KI+E N +++ + D LM+ + + E Sbjct: 546 IDEEVRRIIDACYTRARKILEDNRDILEAMKDALMEYETIDAE 588
>tr|Q251Q2|Q251Q2_DESHY Putative uncharacterized protein OS=Desulfitobacterium hafniense (strain Y51) GN=DSY0201 PE=4 SV=1 Length = 657
Score = 43.5 bits (101), Expect = 0.009 Identities = 15/47 (31%), Positives = 33/47 (70%) Frame = +3
Query: 15 YEVDREAKRILEACYSRAQKIVERNEVLIKELADLLMDAKVVKKEDF 155 Y +D+EA+R+++ CY +AQ I++ N + +A+ LM+ + ++ ++F Sbjct: 546 YSIDKEARRMIDECYLKAQTIIQENMHKLNAIAETLMEKETIEAKEF 592
>tr|A6BI46|A6BI46_9FIRM Putative uncharacterized protein OS=Dorea longicatena DSM 13814 GN=DORLON_01975 PE=4 SV=1 Length = 510
Score = 43.5 bits (101), Expect = 0.009 Identities = 16/45 (35%), Positives = 32/45 (71%) Frame = +3
Query: 21 VDREAKRILEACYSRAQKIVERNEVLIKELADLLMDAKVVKKEDF 155 +D+E KRI++ CY RA+ I+ + + ++ ADLL++ + + +E+F Sbjct: 455 IDQEVKRIIDECYDRARHIIRKYDDVLHACADLLLEKEKISREEF 499
|