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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945820
Clone id YMU02A01NGRL0010_I19
Library
Length 287
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_I19. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCAAGTTCTTCTCTAAGCTTGCGGAGAAGAAGATCAAAGAGGCTGGTGGTGCTGTCCTTC
TCACTGCTTGAGAGGTCAGATCTGCCCTTCTAGTAACGTTTAGGCGGATACCGAGGCTTT
TTTTTTGCTTCTCAATTTAGTTGTAAAGGATTTTTATATGAGGACTTGCAGAGATGAGTT
TTGATGTCCTTACCATGGTGAATGTAGCCGACTCTTCCTTAATGCGAAGGCTCTCCATTT
TGCCCTCCCAGAATGGACTATTTTCTTATTCTTCTGAATAATCTTGT
■■Homology search results ■■ -
sp_hit_id P49637
Definition sp|P49637|R27A3_ARATH 60S ribosomal protein L27a-3 OS=Arabidopsis thaliana
Align length 22
Score (bit) 37.0
E-value 0.03
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945820|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_I19, 5'
         (287 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P49637|R27A3_ARATH 60S ribosomal protein L27a-3 OS=Arabidopsi...    37   0.030
sp|Q9LR33|R27A2_ARATH 60S ribosomal protein L27a-2 OS=Arabidopsi...    37   0.030
sp|P48160|RL27A_DICDI 60S ribosomal protein L27a OS=Dictyosteliu...    33   0.57 
sp|P41092|RL27A_DROME 60S ribosomal protein L27a OS=Drosophila m...    32   0.75 
sp|O15883|RL27A_TRYBB 60S ribosomal protein L27a OS=Trypanosoma ...    32   1.3  
sp|Q5REY2|RL27A_PONAB 60S ribosomal protein L27a OS=Pongo abelii...    31   1.7  
sp|P46776|RL27A_HUMAN 60S ribosomal protein L27a OS=Homo sapiens...    31   1.7  
sp|O01358|RL27A_OSCBR 60S ribosomal protein L27a OS=Oscheius bre...    31   2.2  
sp|P47830|RL27A_XENLA 60S ribosomal protein L27a OS=Xenopus laev...    30   2.8  
sp|P18445|RL27A_RAT 60S ribosomal protein L27a OS=Rattus norvegi...    30   2.8  
sp|P14115|RL27A_MOUSE 60S ribosomal protein L27a OS=Mus musculus...    30   2.8  
sp|Q4R723|RL27A_MACFA 60S ribosomal protein L27a OS=Macaca fasci...    30   2.8  
sp|Q56K03|RL27A_BOVIN 60S ribosomal protein L27a OS=Bos taurus G...    30   2.8  
sp|Q00454|RL27A_TETTH 60S ribosomal protein L27a OS=Tetrahymena ...    30   4.8  
sp|Q5R1X0|RL27A_PANTR 60S ribosomal protein L27a OS=Pan troglody...    30   4.8  
sp|P02406|RL28_YEAST 60S ribosomal protein L28 OS=Saccharomyces ...    29   6.3  
sp|P78987|RL27A_ERYGR 60S ribosomal protein L27a OS=Erysiphe gra...    29   6.3  
sp|O88281|MEGF6_RAT Multiple epidermal growth factor-like domain...    29   6.3  
sp|Q80V70|MEGF6_MOUSE Multiple epidermal growth factor-like doma...    29   6.3  

>sp|P49637|R27A3_ARATH 60S ribosomal protein L27a-3 OS=Arabidopsis
           thaliana GN=RPL27AC PE=2 SV=2
          Length = 146

 Score = 37.0 bits (84), Expect = 0.030
 Identities = 18/22 (81%), Positives = 19/22 (86%)
 Frame = +3

Query: 3   KFFSKLAEKKIKEAGGAVLLTA 68
           K  SK AEKKIKEAGGAV+LTA
Sbjct: 125 KLISKTAEKKIKEAGGAVVLTA 146


>sp|Q9LR33|R27A2_ARATH 60S ribosomal protein L27a-2 OS=Arabidopsis
           thaliana GN=RPL27AB PE=2 SV=1
          Length = 146

 Score = 37.0 bits (84), Expect = 0.030
 Identities = 18/22 (81%), Positives = 19/22 (86%)
 Frame = +3

Query: 3   KFFSKLAEKKIKEAGGAVLLTA 68
           K  SK AEKKIKEAGGAV+LTA
Sbjct: 125 KLISKTAEKKIKEAGGAVVLTA 146


>sp|P48160|RL27A_DICDI 60S ribosomal protein L27a OS=Dictyostelium
           discoideum GN=rpl27a PE=3 SV=1
          Length = 148

 Score = 32.7 bits (73), Expect = 0.57
 Identities = 14/22 (63%), Positives = 18/22 (81%)
 Frame = +3

Query: 3   KFFSKLAEKKIKEAGGAVLLTA 68
           ++FSK+AEKKIK  GGA +L A
Sbjct: 127 RYFSKVAEKKIKAVGGACILVA 148


>sp|P41092|RL27A_DROME 60S ribosomal protein L27a OS=Drosophila
           melanogaster GN=RpL27A PE=2 SV=2
          Length = 149

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 15/22 (68%), Positives = 18/22 (81%)
 Frame = +3

Query: 3   KFFSKLAEKKIKEAGGAVLLTA 68
           K+FSK AE KIK+AGG  LL+A
Sbjct: 128 KYFSKKAEDKIKKAGGVCLLSA 149


>sp|O15883|RL27A_TRYBB 60S ribosomal protein L27a OS=Trypanosoma
           brucei brucei GN=RPL27A PE=2 SV=1
          Length = 145

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 14/22 (63%), Positives = 20/22 (90%)
 Frame = +3

Query: 3   KFFSKLAEKKIKEAGGAVLLTA 68
           ++ SKLA+KKI++AGGAV+L A
Sbjct: 124 RWVSKLADKKIRKAGGAVVLQA 145


>sp|Q5REY2|RL27A_PONAB 60S ribosomal protein L27a OS=Pongo abelii
           GN=RPL27A PE=2 SV=3
          Length = 148

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 14/22 (63%), Positives = 17/22 (77%)
 Frame = +3

Query: 3   KFFSKLAEKKIKEAGGAVLLTA 68
           KFFS+ AE+KIK  GGA +L A
Sbjct: 127 KFFSRRAEEKIKSVGGACVLVA 148


>sp|P46776|RL27A_HUMAN 60S ribosomal protein L27a OS=Homo sapiens
           GN=RPL27A PE=1 SV=2
          Length = 148

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 14/22 (63%), Positives = 17/22 (77%)
 Frame = +3

Query: 3   KFFSKLAEKKIKEAGGAVLLTA 68
           KFFS+ AE+KIK  GGA +L A
Sbjct: 127 KFFSRRAEEKIKSVGGACVLVA 148


>sp|O01358|RL27A_OSCBR 60S ribosomal protein L27a OS=Oscheius
           brevesophaga GN=rpl-27a PE=3 SV=1
          Length = 145

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 15/22 (68%), Positives = 16/22 (72%)
 Frame = +3

Query: 3   KFFSKLAEKKIKEAGGAVLLTA 68
           KFFS  AE KIK AGGA +L A
Sbjct: 124 KFFSHEAENKIKAAGGACILVA 145


>sp|P47830|RL27A_XENLA 60S ribosomal protein L27a OS=Xenopus laevis
           GN=rpl27a PE=2 SV=2
          Length = 148

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 14/22 (63%), Positives = 17/22 (77%)
 Frame = +3

Query: 3   KFFSKLAEKKIKEAGGAVLLTA 68
           KFFS+ AE+KIK  GGA +L A
Sbjct: 127 KFFSRKAEEKIKSVGGACVLGA 148


>sp|P18445|RL27A_RAT 60S ribosomal protein L27a OS=Rattus norvegicus
           GN=Rpl27a PE=1 SV=3
          Length = 148

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 14/22 (63%), Positives = 17/22 (77%)
 Frame = +3

Query: 3   KFFSKLAEKKIKEAGGAVLLTA 68
           KFFS+ AE+KIK  GGA +L A
Sbjct: 127 KFFSRRAEEKIKGVGGACVLVA 148
tr_hit_id A9U0C6
Definition tr|A9U0C6|A9U0C6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 22
Score (bit) 43.9
E-value 0.004
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945820|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_I19, 5'
         (287 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9U0C6|A9U0C6_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.004
tr|A9T2A5|A9T2A5_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.004
tr|A9S940|A9S940_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.004
tr|A9REA3|A9REA3_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.004
tr|A9RGH4|A9RGH4_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.005
tr|B7FQU7|B7FQU7_PHATR Predicted protein OS=Phaeodactylum tricor...    42   0.020
tr|A9SGW7|A9SGW7_PHYPA Predicted protein OS=Physcomitrella paten...    41   0.026
tr|Q7G142|Q7G142_PICMA Putative 60S ribosomal protein L27a (Frag...    39   0.099
tr|Q7G141|Q7G141_PICMA Putative 60S ribosomal protein L27a (Frag...    39   0.099
tr|O65089|O65089_PICMA Probable 60S ribosomal protein L27a (Frag...    39   0.099
tr|A9NWY0|A9NWY0_PICSI Putative uncharacterized protein OS=Picea...    39   0.099
tr|A9NT50|A9NT50_PICSI Putative uncharacterized protein OS=Picea...    39   0.099
tr|B8Y7G1|B8Y7G1_9APIC 60S ribosomal protein L27a OS=Babesia ori...    39   0.17 
tr|B7FMM6|B7FMM6_MEDTR Putative uncharacterized protein OS=Medic...    38   0.22 
tr|A9PD59|A9PD59_POPTR Putative uncharacterized protein OS=Popul...    38   0.22 
tr|A9PC30|A9PC30_POPTR Putative uncharacterized protein OS=Popul...    38   0.22 
tr|A9P931|A9P931_POPTR Putative uncharacterized protein OS=Popul...    38   0.22 
tr|A9P8T3|A9P8T3_POPTR Putative uncharacterized protein OS=Popul...    38   0.22 
tr|A9PAW0|A9PAW0_POPTR Putative uncharacterized protein OS=Popul...    38   0.29 
tr|A5C234|A5C234_VITVI Putative uncharacterized protein (Chromos...    38   0.29 
tr|A5BKX2|A5BKX2_VITVI Putative uncharacterized protein (Chromos...    38   0.29 
tr|A5BE36|A5BE36_VITVI Putative uncharacterized protein (Chromos...    38   0.29 
tr|A7ANT3|A7ANT3_BABBO Ribosomal protein L15, putative OS=Babesi...    37   0.38 
tr|Q7G923|Q7G923_ARATH 60S ribosomal protein L27A; 71521-71081 O...    37   0.49 
tr|B8BVY6|B8BVY6_THAPS RL17A, ribosomal protein 27A 60S large ri...    37   0.49 
tr|A1Z1S1|A1Z1S1_BRAJU Ribosomal large subunit structural protei...    37   0.49 
tr|Q9MAW6|Q9MAW6_PANGI 60S ribosomal protein L27a OS=Panax ginse...    37   0.64 
tr|Q84MQ4|Q84MQ4_ORYSJ Os03g0408300 protein OS=Oryza sativa subs...    37   0.64 
tr|Q6EUQ7|Q6EUQ7_ORYSJ Os02g0175600 protein OS=Oryza sativa subs...    37   0.64 
tr|B6SK14|B6SK14_MAIZE 60S ribosomal protein L27a-2 OS=Zea mays ...    37   0.64 

>tr|A9U0C6|A9U0C6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_172983 PE=3 SV=1
          Length = 146

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 21/22 (95%), Positives = 22/22 (100%)
 Frame = +3

Query: 3   KFFSKLAEKKIKEAGGAVLLTA 68
           KFFSKLAEKKIKEAGGAV+LTA
Sbjct: 125 KFFSKLAEKKIKEAGGAVILTA 146


>tr|A9T2A5|A9T2A5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_218230 PE=3 SV=1
          Length = 146

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 21/22 (95%), Positives = 22/22 (100%)
 Frame = +3

Query: 3   KFFSKLAEKKIKEAGGAVLLTA 68
           KFFSKLAEKKIKEAGGAV+LTA
Sbjct: 125 KFFSKLAEKKIKEAGGAVILTA 146


>tr|A9S940|A9S940_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_109835 PE=3 SV=1
          Length = 146

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 21/22 (95%), Positives = 22/22 (100%)
 Frame = +3

Query: 3   KFFSKLAEKKIKEAGGAVLLTA 68
           KFFSKLAEKKIKEAGGAV+LTA
Sbjct: 125 KFFSKLAEKKIKEAGGAVILTA 146


>tr|A9REA3|A9REA3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_112570 PE=3 SV=1
          Length = 146

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 21/22 (95%), Positives = 22/22 (100%)
 Frame = +3

Query: 3   KFFSKLAEKKIKEAGGAVLLTA 68
           KFFSKLAEKKIKEAGGAV+LTA
Sbjct: 125 KFFSKLAEKKIKEAGGAVILTA 146


>tr|A9RGH4|A9RGH4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_202144 PE=3 SV=1
          Length = 146

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 21/22 (95%), Positives = 22/22 (100%)
 Frame = +3

Query: 3   KFFSKLAEKKIKEAGGAVLLTA 68
           KFFSKLAEKKIKEAGGAV+LTA
Sbjct: 125 KFFSKLAEKKIKEAGGAVVLTA 146


>tr|B7FQU7|B7FQU7_PHATR Predicted protein OS=Phaeodactylum
           tricornutum CCAP 1055/1 GN=PHATRDRAFT_43162 PE=4 SV=1
          Length = 146

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 20/22 (90%), Positives = 21/22 (95%)
 Frame = +3

Query: 3   KFFSKLAEKKIKEAGGAVLLTA 68
           K+FSKLAEKKIKEAGGA LLTA
Sbjct: 125 KYFSKLAEKKIKEAGGACLLTA 146


>tr|A9SGW7|A9SGW7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_184822 PE=3 SV=1
          Length = 146

 Score = 41.2 bits (95), Expect = 0.026
 Identities = 20/22 (90%), Positives = 21/22 (95%)
 Frame = +3

Query: 3   KFFSKLAEKKIKEAGGAVLLTA 68
           KFFSKLAEKKIK AGGAV+LTA
Sbjct: 125 KFFSKLAEKKIKVAGGAVILTA 146


>tr|Q7G142|Q7G142_PICMA Putative 60S ribosomal protein L27a
           (Fragment) OS=Picea mariana GN=Sb72 PE=3 SV=1
          Length = 67

 Score = 39.3 bits (90), Expect = 0.099
 Identities = 19/22 (86%), Positives = 20/22 (90%)
 Frame = +3

Query: 3   KFFSKLAEKKIKEAGGAVLLTA 68
           K  SKLAEKKIKEAGGAV+LTA
Sbjct: 46  KLISKLAEKKIKEAGGAVMLTA 67


>tr|Q7G141|Q7G141_PICMA Putative 60S ribosomal protein L27a
           (Fragment) OS=Picea mariana GN=Sb72 PE=3 SV=1
          Length = 71

 Score = 39.3 bits (90), Expect = 0.099
 Identities = 19/22 (86%), Positives = 20/22 (90%)
 Frame = +3

Query: 3   KFFSKLAEKKIKEAGGAVLLTA 68
           K  SKLAEKKIKEAGGAV+LTA
Sbjct: 50  KLISKLAEKKIKEAGGAVMLTA 71


>tr|O65089|O65089_PICMA Probable 60S ribosomal protein L27a
           (Fragment) OS=Picea mariana GN=Sb72 PE=2 SV=1
          Length = 86

 Score = 39.3 bits (90), Expect = 0.099
 Identities = 19/22 (86%), Positives = 20/22 (90%)
 Frame = +3

Query: 3   KFFSKLAEKKIKEAGGAVLLTA 68
           K  SKLAEKKIKEAGGAV+LTA
Sbjct: 65  KLISKLAEKKIKEAGGAVMLTA 86