NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945821
Clone id YMU02A01NGRL0010_I21
Library
Length 414
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_I21. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TCTTTCTCTGGCGCGTGAGATGCATGAAGGCAGAGGCCCCTTCTGTGTTCTTCTATTTCG
CGCGTGTCCGCGTCCCGATTCAAGGGGCTGTGGACCTGGTCTTCTGCCGTCTCTCGCTCG
TGGAGGCTCCTTGCTGGCGGTGGTGCAGGGAATGAAGTCGACGCTGATTGCGATGGAAGG
TTCGGTCTCTACAGCCTGTGTGACGACGCCATGCTGTGCCAATTCTCCCCAGATTGCTTC
GGTGGAGTTGGCTCATCATTGCGTGATGCAGTTGCATGTGATTCCCAAATCTGGCTATGG
ACTGCAAGGGCTTTAAATTCACCATTTCTAAGGTTGTAATTGTCGACTGTTTTCGAGGCC
TGCGTGTAAGGTGTTGCTCTCTTACNAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q54XG7
Definition sp|Q54XG7|DIMA_DICDI Basic-leucine zipper transcription factor A OS=Dictyostelium discoideum
Align length 67
Score (bit) 32.3
E-value 0.76
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945821|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_I21, 5'
         (386 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q54XG7|DIMA_DICDI Basic-leucine zipper transcription factor A...    32   0.76 
sp|O18745|HSP1_ANTLA Sperm protamine-P1 OS=Antechinomys laniger ...    32   1.00 
sp|P67846|HSP1_THYCY Sperm protamine-P1 OS=Thylacinus cynocephal...    32   1.3  
sp|Q71UF8|HSP1_SMIYO Sperm protamine-P1 OS=Sminthopsis youngsoni...    32   1.3  
sp|Q71UF9|HSP1_SMIVI Sperm protamine-P1 OS=Sminthopsis virginiae...    32   1.3  
sp|Q71UG0|HSP1_SMIPS Sperm protamine-P1 OS=Sminthopsis psammophi...    32   1.3  
sp|Q71UG1|HSP1_SMIOO Sperm protamine-P1 OS=Sminthopsis ooldea GN...    32   1.3  
sp|Q71VP9|HSP1_SMIMU Sperm protamine-P1 OS=Sminthopsis murina GN...    32   1.3  
sp|Q71VP8|HSP1_SMIMA Sperm protamine-P1 OS=Sminthopsis macroura ...    32   1.3  
sp|Q9TUC2|HSP1_SMILO Sperm protamine-P1 OS=Sminthopsis longicaud...    32   1.3  
sp|Q71UG2|HSP1_SMILE Sperm protamine-P1 OS=Sminthopsis leucopus ...    32   1.3  
sp|Q71UG3|HSP1_SMIHI Sperm protamine-P1 OS=Sminthopsis hirtipes ...    32   1.3  
sp|Q9TUC3|HSP1_SMIGR Sperm protamine-P1 OS=Sminthopsis griseoven...    32   1.3  
sp|Q71UG5|HSP1_SMIGI Sperm protamine-P1 OS=Sminthopsis gilberti ...    32   1.3  
sp|Q71UG4|HSP1_SMIGA Sperm protamine-P1 OS=Sminthopsis granulipe...    32   1.3  
sp|Q71UG6|HSP1_SMIDO Sperm protamine-P1 OS=Sminthopsis douglasi ...    32   1.3  
sp|Q71UG7|HSP1_SMIDL Sperm protamine-P1 OS=Sminthopsis dolichura...    32   1.3  
sp|P67844|HSP1_SMICR Sperm protamine-P1 OS=Sminthopsis crassicau...    32   1.3  
sp|Q9TUC4|HSP1_SMIBI Sperm protamine-P1 OS=Sminthopsis bindi GN=...    32   1.3  
sp|Q71UG8|HSP1_SMIAR Sperm protamine-P1 OS=Sminthopsis archeri G...    32   1.3  
sp|Q71UG9|HSP1_SMIAI Sperm protamine-P1 OS=Sminthopsis aitkeni G...    32   1.3  
sp|Q71VP4|HSP1_PLAMM Sperm protamine-P1 OS=Planigale maculata ma...    32   1.3  
sp|P67847|HSP1_PHATA Sperm protamine-P1 OS=Phascogale tapoatafa ...    32   1.3  
sp|Q71V10|HSP1_PHACL Sperm protamine-P1 OS=Phascogale calura GN=...    32   1.3  
sp|Q71VP6|HSP1_NINYV Sperm protamine-P1 OS=Ningaui yvonnae GN=PR...    32   1.3  
sp|Q71VP5|HSP1_NINTI Sperm protamine-P1 OS=Ningaui timealeyi GN=...    32   1.3  
sp|Q71VP7|HSP1_NINRI Sperm protamine-P1 OS=Ningaui ridei GN=PRM1...    32   1.3  
sp|P67845|HSP1_MYRFA Sperm protamine-P1 OS=Myrmecobius fasciatus...    32   1.3  
sp|Q71V11|HSP1_MURRO Sperm protamine-P1 OS=Murexia rothschildi G...    32   1.3  
sp|P67848|HSP1_MURLO Sperm protamine-P1 OS=Murexia longicaudata ...    32   1.3  

>sp|Q54XG7|DIMA_DICDI Basic-leucine zipper transcription factor A
           OS=Dictyostelium discoideum GN=dimA PE=2 SV=2
          Length = 1230

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -2

Query: 280 HMQ-LHHAMMSQLHRSNLGRIGTAWRRHTGCRDRTFHRNQRRLHSLHHRQQGASTSERRQ 104
           H+Q LH A + Q H S L +   A +     + + FH+   + H   ++QQ      ++Q
Sbjct: 386 HVQSLHQAQVQQAHMSQLQQQQLAQQAFQQAQQQQFHQQNIQQHQNQNQQQLQLPQPQQQ 445

Query: 103 KTRSTAP 83
           + +ST P
Sbjct: 446 QHKSTPP 452


>sp|O18745|HSP1_ANTLA Sperm protamine-P1 OS=Antechinomys laniger
           GN=PRM1 PE=2 SV=3
          Length = 62

 Score = 32.0 bits (71), Expect = 1.00
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 211 WRRHTGCRDRTFHRNQRRLHSLHHRQQGASTSERRQKTR 95
           +RRH+  R R+ +R +RR  S HH ++    S R  + R
Sbjct: 4   YRRHSRSRSRSRYRRRRRRRSRHHNRRTYRRSRRHSRRR 42


>sp|P67846|HSP1_THYCY Sperm protamine-P1 OS=Thylacinus cynocephalus
           GN=PRM1 PE=2 SV=2
          Length = 63

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 211 WRRHTGCRDRTFHRNQRRLHSLHHRQQGASTSERRQKTR 95
           +RRH+  R R+ +R +RR  S HH ++      RR   R
Sbjct: 4   YRRHSRSRSRSRYRRRRRRRSRHHNRRRTYRRSRRHSRR 42


>sp|Q71UF8|HSP1_SMIYO Sperm protamine-P1 OS=Sminthopsis youngsoni
           GN=PRM1 PE=2 SV=3
          Length = 63

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 211 WRRHTGCRDRTFHRNQRRLHSLHHRQQGASTSERRQKTR 95
           +RRH+  R R+ +R +RR  S HH ++      RR   R
Sbjct: 4   YRRHSRSRSRSRYRRRRRRRSRHHNRRRTYRRSRRHSRR 42


>sp|Q71UF9|HSP1_SMIVI Sperm protamine-P1 OS=Sminthopsis virginiae
           GN=PRM1 PE=2 SV=3
          Length = 63

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 211 WRRHTGCRDRTFHRNQRRLHSLHHRQQGASTSERRQKTR 95
           +RRH+  R R+ +R +RR  S HH ++      RR   R
Sbjct: 4   YRRHSRSRSRSRYRRRRRRRSRHHNRRRTYRRSRRHSRR 42


>sp|Q71UG0|HSP1_SMIPS Sperm protamine-P1 OS=Sminthopsis psammophila
           GN=PRM1 PE=2 SV=3
          Length = 63

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 211 WRRHTGCRDRTFHRNQRRLHSLHHRQQGASTSERRQKTR 95
           +RRH+  R R+ +R +RR  S HH ++      RR   R
Sbjct: 4   YRRHSRSRSRSRYRRRRRRRSRHHNRRRTYRRSRRHSRR 42


>sp|Q71UG1|HSP1_SMIOO Sperm protamine-P1 OS=Sminthopsis ooldea
           GN=PRM1 PE=2 SV=3
          Length = 63

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 211 WRRHTGCRDRTFHRNQRRLHSLHHRQQGASTSERRQKTR 95
           +RRH+  R R+ +R +RR  S HH ++      RR   R
Sbjct: 4   YRRHSRSRSRSRYRRRRRRRSRHHNRRRTYRRSRRHSRR 42


>sp|Q71VP9|HSP1_SMIMU Sperm protamine-P1 OS=Sminthopsis murina
           GN=PRM1 PE=2 SV=3
          Length = 63

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 211 WRRHTGCRDRTFHRNQRRLHSLHHRQQGASTSERRQKTR 95
           +RRH+  R R+ +R +RR  S HH ++      RR   R
Sbjct: 4   YRRHSRSRSRSRYRRRRRRRSRHHNRRRTYRRSRRHSRR 42


>sp|Q71VP8|HSP1_SMIMA Sperm protamine-P1 OS=Sminthopsis macroura
           GN=PRM1 PE=2 SV=3
          Length = 63

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 211 WRRHTGCRDRTFHRNQRRLHSLHHRQQGASTSERRQKTR 95
           +RRH+  R R+ +R +RR  S HH ++      RR   R
Sbjct: 4   YRRHSRSRSRSRYRRRRRRRSRHHNRRRTYRRSRRHSRR 42


>sp|Q9TUC2|HSP1_SMILO Sperm protamine-P1 OS=Sminthopsis longicaudata
           GN=PRM1 PE=2 SV=3
          Length = 62

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 211 WRRHTGCRDRTFHRNQRRLHSLHHRQQGASTSERRQKTR 95
           +RRH+  R R+ +R +RR  S HH ++      RR   R
Sbjct: 4   YRRHSRSRSRSRYRRRRRRRSRHHNRRRTYRRSRRHSRR 42
tr_hit_id A9GJ56
Definition tr|A9GJ56|A9GJ56_SORC5 Putative uncharacterized protein OS=Sorangium cellulosum (strain So ce56)
Align length 107
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945821|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_I21, 5'
         (386 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9GJ56|A9GJ56_SORC5 Putative uncharacterized protein OS=Soran...    35   1.4  
tr|Q08VD8|Q08VD8_STIAU Putative uncharacterized protein (Fragmen...    34   3.2  
tr|A8N3M3|A8N3M3_COPC7 Putative uncharacterized protein OS=Copri...    34   3.2  
tr|Q4CVE1|Q4CVE1_TRYCR Putative uncharacterized protein OS=Trypa...    33   7.2  
tr|A8XW25|A8XW25_CAEBR Putative uncharacterized protein OS=Caeno...    33   9.3  
tr|A2R7A5|A2R7A5_ASPNC Contig An16c0100, complete genome. OS=Asp...    33   9.3  

>tr|A9GJ56|A9GJ56_SORC5 Putative uncharacterized protein
           OS=Sorangium cellulosum (strain So ce56) GN=sce3199 PE=4
           SV=1
          Length = 922

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 14/107 (13%)
 Frame = +1

Query: 37  PLLCSSISRVSASRFKGLWTWSSAVSRSWR-----LLAGGGAGNEVDADCDGRFG--LYS 195
           P L  + +R S +  +GLW WS A+  S R      LA G    E +A      G  L  
Sbjct: 616 PRLSEAAARWSPAAVRGLWAWSEALPPSERHMVLARLASGLPAEEREAGASEALGLALSL 675

Query: 196 LCDDAM-------LCQFSPDCFGGVGSSLRDAVACDSQIWLWTARAL 315
           L  DA+       +C  +P    G  S+L  A A  + + L   +A+
Sbjct: 676 LAGDALPPDACWSICALAPHAPAGAASALVQACAAAAGLHLPVVKAV 722


>tr|Q08VD8|Q08VD8_STIAU Putative uncharacterized protein (Fragment)
           OS=Stigmatella aurantiaca DW4/3-1 GN=STIAU_4494 PE=4
           SV=1
          Length = 173

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = -2

Query: 280 HMQLHHAMMSQLHRSNLGRIGTAWRRH----TGCRDRTFHRNQRRLHSLHH 140
           H Q H     QLH  + G  GTA  +H     G RD    R Q+RLH L H
Sbjct: 84  HHQRHAEQQRQLHVGDRGADGTAAIQHHLDVDGRRDGVRQRRQQRLHPLDH 134


>tr|A8N3M3|A8N3M3_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_00668 PE=4 SV=1
          Length = 837

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +1

Query: 70  ASRFKGLWTWSSAVSRSWRLLAGGGAGNEVDAD 168
           A  F+GL  W  A  + W +LAGGG G  VDA+
Sbjct: 630 AEAFEGLEKWKDA-RKDWEILAGGGGGGWVDAN 661


>tr|Q4CVE1|Q4CVE1_TRYCR Putative uncharacterized protein
            OS=Trypanosoma cruzi GN=Tc00.1047053507933.10 PE=4 SV=1
          Length = 2323

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 13/92 (14%)
 Frame = -2

Query: 370  LTRRPRKQSTITTLEMVNLKPLQSIARFGNHMQLHH-------------AMMSQLHRSNL 230
            LT    +Q+T +T  +   + LQS  R  N  QL               A  ++LHRSN+
Sbjct: 1865 LTEELERQNTQSTAYLKEREQLQSALR-ENTSQLERVARKATADLETALAKTNELHRSNI 1923

Query: 229  GRIGTAWRRHTGCRDRTFHRNQRRLHSLHHRQ 134
             ++ TA RR             R L SL  RQ
Sbjct: 1924 EKLETALRREQQAAQEVRTARDRALESLEERQ 1955


>tr|A8XW25|A8XW25_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG19634 PE=4 SV=2
          Length = 342

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -2

Query: 250 QLHRSNLGRIGTAWRRHTGCRDRTFHRNQRRLHSLH-HRQQGASTSERRQKTRSTAP*IG 74
           ++H+S+  R   ++R+ +  RDR   R + R    H  R +  S S  R + RS +P  G
Sbjct: 258 KVHKSSRERDRESYRKRSSSRDRKRDRKRSRSRDRHDRRDRKKSRSRSRDRRRSRSPPRG 317

Query: 73  TRTR 62
            R R
Sbjct: 318 ERRR 321


>tr|A2R7A5|A2R7A5_ASPNC Contig An16c0100, complete genome.
           OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
           GN=An16g02850 PE=3 SV=1
          Length = 363

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
 Frame = -1

Query: 377 ATPYTQASKTVDNYNLRNGEFKALAVHSQIWESHATASRND------EPTPPKQSGENWH 216
           A PYT   + V  ++   G+  + + HS  WES    S N          PPK   E W+
Sbjct: 229 AGPYTMVVQKVRVHDFHTGKEYSYSDHSGSWESIKVVSGNSTTVEQLNKPPPKSLSERWN 288

Query: 215 SMAS 204
            + S
Sbjct: 289 ELPS 292