DK945849
Clone id YMU02A01NGRL0010_K09
Library
Length 590
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_K09. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
ACACCTTTTCGAACGAAAGAGTTGGGAAGGGAGTACAGCTCTCTGCACACACTCGTTCAC
CTCTTTTGCTGATTCCTCCCTCACGCAGAGAGTGCTTGGAAGGAACCATGGCAGCCGTGT
CAGCCACCGTTACACCGGCCCTCGTTCCGAACACCTGCGTGTCGAAGTCTCTCAGCTCCT
CCAGCGCTAGGCCCGCTGCAGGTCTGCCGGCCCTGAGGAAGATGAATGTTTCTTGCTCTT
TGAAGGAGGAACATGAGTCAAGGAAGGTTGAGCCGGCGGCTGCAGGTGCACTTGCAGCCT
CCATCATGGCTGTTGCCCATCCTGCGCTTGCCCTTGTGGATGATCGCCTTAGCACCGAGG
GTACTGGACTTTCTCTTGGTGTGAGCAACCCCCTAATTGTCTGGATTCTTCTCGGCGTCG
CAACACTAATCTGGGCTCTCTTCTTCGTATATGCATCTTCACTGAAGGAAGATGATGACT
CTGGGCTCGCGTTGTAAGAGCTGTGAATCGAGCTTCTGTATTGTATATTCAATTCTGATC
AATGTCAAAAGTTGTCTCAAGTTTTTTGGTGAGTTCAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q41387
Definition sp|Q41387|PSBW_SPIOL Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea
Align length 56
Score (bit) 82.8
E-value 1.0e-15
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945849|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_K09, 5'
(576 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q41387|PSBW_SPIOL Photosystem II reaction center W protein, c... 83 1e-15
sp|Q5ZBY9|PSBW_ORYSJ Photosystem II reaction center W protein, c... 81 3e-15
sp|Q39194|PSBW_ARATH Photosystem II reaction center W protein, c... 81 4e-15
sp|Q9SPI9|PSBW_CHLRE Photosystem II reaction center W protein, c... 59 2e-08
sp|P55967|PSBW_WHEAT Photosystem II reaction center W protein (F... 37 0.092
sp|O60069|SWF1_SCHPO Palmitoyltransferase swf1 OS=Schizosaccharo... 31 3.9
sp|Q5T749|KPRP_HUMAN Keratinocyte proline-rich protein OS=Homo s... 31 5.1
sp|Q9TTK4|LYST_BOVIN Lysosomal-trafficking regulator OS=Bos taur... 30 8.6

>sp|Q41387|PSBW_SPIOL Photosystem II reaction center W protein,
chloroplastic OS=Spinacia oleracea GN=psbW PE=1 SV=1
Length = 137

Score = 82.8 bits (203), Expect = 1e-15
Identities = 38/56 (67%), Positives = 48/56 (85%)
Frame = +3

Query: 318 HPALALVDDRLSTEGTGLSLGVSNPLIVWILLGVATLIWALFFVYASSLKEDDDSG 485
+PA+ALVD+R+STEGTGL G+SN L+ WIL GV LIWAL+FVYAS L+ED++SG
Sbjct: 79 NPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFVYASGLEEDEESG 134


>sp|Q5ZBY9|PSBW_ORYSJ Photosystem II reaction center W protein,
chloroplastic OS=Oryza sativa subsp. japonica GN=PSBW
PE=2 SV=1
Length = 124

Score = 81.3 bits (199), Expect = 3e-15
Identities = 37/55 (67%), Positives = 48/55 (87%)
Frame = +3

Query: 321 PALALVDDRLSTEGTGLSLGVSNPLIVWILLGVATLIWALFFVYASSLKEDDDSG 485
PA+ALVD+R+STEGTGLSLG+SN L+ WILLGV LIW+L+ +Y S L+ED++SG
Sbjct: 66 PAMALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTIYTSDLEEDEESG 120


>sp|Q39194|PSBW_ARATH Photosystem II reaction center W protein,
chloroplastic OS=Arabidopsis thaliana GN=PSBW PE=1 SV=2
Length = 133

Score = 80.9 bits (198), Expect = 4e-15
Identities = 37/56 (66%), Positives = 46/56 (82%)
Frame = +3

Query: 318 HPALALVDDRLSTEGTGLSLGVSNPLIVWILLGVATLIWALFFVYASSLKEDDDSG 485
+PA+ALVD+R+STEGTGL G+SN L+ WIL GV LIW FFVY SSL+ED++SG
Sbjct: 75 NPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFFFVYTSSLEEDEESG 130


>sp|Q9SPI9|PSBW_CHLRE Photosystem II reaction center W protein,
chloroplastic OS=Chlamydomonas reinhardtii GN=psbW PE=1
SV=1
Length = 115

Score = 58.9 bits (141), Expect = 2e-08
Identities = 24/55 (43%), Positives = 40/55 (72%)
Frame = +3

Query: 318 HPALALVDDRLSTEGTGLSLGVSNPLIVWILLGVATLIWALFFVYASSLKEDDDS 482
HPA ALVD+R++ +GTG GV++P++ W+LLGV +WA++F+ L + +D+
Sbjct: 55 HPAFALVDERMNGDGTGRPFGVNDPVLGWVLLGVFGTMWAIWFIGQKDLGDFEDA 109


>sp|P55967|PSBW_WHEAT Photosystem II reaction center W protein
(Fragment) OS=Triticum aestivum GN=psbW PE=1 SV=1
Length = 20

Score = 36.6 bits (83), Expect = 0.092
Identities = 16/19 (84%), Positives = 19/19 (100%)
Frame = +3

Query: 333 LVDDRLSTEGTGLSLGVSN 389
LVD+R+STEGTGLSLG+SN
Sbjct: 1 LVDERMSTEGTGLSLGLSN 19


>sp|O60069|SWF1_SCHPO Palmitoyltransferase swf1
OS=Schizosaccharomyces pombe GN=swf1 PE=2 SV=1
Length = 356

Score = 31.2 bits (69), Expect = 3.9
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = +3

Query: 339 DDRLSTEGTGLS---LGVSNPLIVWILLGVATLIWALFFVYASSLKE 470
D R S LS L +NPL+V++ L + T+ A FF+Y SSL +
Sbjct: 58 DGRCSAAMRSLSNYVLYKNNPLVVFLYLALITIGIASFFIYGSSLTQ 104


>sp|Q5T749|KPRP_HUMAN Keratinocyte proline-rich protein OS=Homo
sapiens GN=KPRP PE=1 SV=1
Length = 579

Score = 30.8 bits (68), Expect = 5.1
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +1

Query: 100 KEPWQPCQPPLHRPSFRTPACRSLSAPPALGPLQVCRP 213
+ P Q C PP RP R C SL P P Q+ P
Sbjct: 393 ESPLQRCPPPAPRPRLRPEPCISLEPRPRPLPRQLSEP 430


>sp|Q9TTK4|LYST_BOVIN Lysosomal-trafficking regulator OS=Bos taurus
GN=LYST PE=1 SV=1
Length = 3796

Score = 30.0 bits (66), Expect = 8.6
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = -2

Query: 530 EYTIQKLDSQLLQREPRVIIFLQ*RCIYEEESPD*CCDAEKNPDN*GVAHTKRKSSTLGA 351
E +Q +++L QR R+ +F R +Y+E +PD D P++ + T + +
Sbjct: 2624 ENPVQATETELAQRLQRLTVFAVNRIVYQEFNPD-IIDILSTPESTTQSRTSASQTEISE 2682

Query: 350 KAIIHK 333
+ I H+
Sbjct: 2683 ENIHHE 2688


tr_hit_id A9PJA9
Definition tr|A9PJA9|A9PJA9_POPJC Putative uncharacterized protein OS=Populus jackii
Align length 55
Score (bit) 87.0
E-value 7.0e-16
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945849|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_K09, 5'
(576 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9PJA9|A9PJA9_POPJC Putative uncharacterized protein OS=Popul... 87 7e-16
tr|A9SEQ6|A9SEQ6_PHYPA Predicted protein (Fragment) OS=Physcomit... 85 2e-15
tr|A9SEQ5|A9SEQ5_PHYPA Predicted protein OS=Physcomitrella paten... 85 2e-15
tr|A9PEP9|A9PEP9_POPTR Putative uncharacterized protein OS=Popul... 84 4e-15
tr|B6TMB3|B6TMB3_MAIZE Photosystem II reaction center W protein ... 83 9e-15
tr|Q9AXN9|Q9AXN9_PHYPA PSII subunit PsbW (Fragment) OS=Physcomit... 82 2e-14
tr|A9T8Y1|A9T8Y1_PHYPA Predicted protein (Fragment) OS=Physcomit... 82 2e-14
tr|B7E500|B7E500_ORYSJ cDNA clone:001-011-D03, full insert seque... 81 4e-14
tr|B6TM37|B6TM37_MAIZE Photosystem II reaction center W protein ... 81 4e-14
tr|B6T2W4|B6T2W4_MAIZE Photosystem II reaction center W protein ... 81 4e-14
tr|B6SMK2|B6SMK2_MAIZE Photosystem II reaction center W protein ... 81 4e-14
tr|B4FUI4|B4FUI4_MAIZE Photosystem II reaction center W protein ... 81 4e-14
tr|A9NL01|A9NL01_PICSI Putative uncharacterized protein OS=Picea... 81 4e-14
tr|A2WVK4|A2WVK4_ORYSI Putative uncharacterized protein OS=Oryza... 81 4e-14
tr|B7FHC2|B7FHC2_MEDTR Putative uncharacterized protein OS=Medic... 81 5e-14
tr|A9NLC2|A9NLC2_PICSI Putative uncharacterized protein OS=Picea... 81 5e-14
tr|A7QVP6|A7QVP6_VITVI Chromosome chr14 scaffold_190, whole geno... 81 5e-14
tr|A5C3A9|A5C3A9_VITVI Putative uncharacterized protein OS=Vitis... 81 5e-14
tr|A7PUM2|A7PUM2_VITVI Chromosome chr7 scaffold_31, whole genome... 80 6e-14
tr|A1YMY4|A1YMY4_BRACM Component of 6.1 kDa polypeptide of photo... 80 6e-14
tr|Q41908|Q41908_ARATH Photosystem II 7kD protein OS=Arabidopsis... 80 1e-13
tr|A3B5P7|A3B5P7_ORYSJ Putative uncharacterized protein OS=Oryza... 79 2e-13
tr|Q8W536|Q8W536_9FABA Photosystem II reaction center (Fragment)... 78 4e-13
tr|Q9AXP0|Q9AXP0_PHYPA PSII subunit PsbW (Fragment) OS=Physcomit... 69 2e-10
tr|Q9AXN8|Q9AXN8_PHYPA PSII subunit PsbW (Fragment) OS=Physcomit... 67 7e-10
tr|A8JFQ7|A8JFQ7_CHLRE Photosystem II reaction center W protein ... 59 2e-07
tr|A2SY30|A2SY30_MESVI Photosystem II reaction center W protein ... 54 8e-06
tr|Q944K9|Q944K9_ARATH At2g30570/T6B20.8 OS=Arabidopsis thaliana... 53 1e-05
tr|B5A4J5|B5A4J5_GYMST Photosystem II reaction center W protein ... 52 3e-05
tr|Q7XYI4|Q7XYI4_BIGNA Photosystem II protein PsbW OS=Bigelowiel... 49 2e-04

>tr|A9PJA9|A9PJA9_POPJC Putative uncharacterized protein OS=Populus
jackii PE=2 SV=1
Length = 133

Score = 87.0 bits (214), Expect = 7e-16
Identities = 41/55 (74%), Positives = 47/55 (85%)
Frame = +3

Query: 321 PALALVDDRLSTEGTGLSLGVSNPLIVWILLGVATLIWALFFVYASSLKEDDDSG 485
PALALVD+RLSTEGTGL G+SN L+VWILLGV IW+L+FVY SSL ED+DSG
Sbjct: 76 PALALVDERLSTEGTGLPFGLSNNLLVWILLGVFAFIWSLYFVYTSSLDEDEDSG 130


>tr|A9SEQ6|A9SEQ6_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_128580 PE=4 SV=1
Length = 142

Score = 85.1 bits (209), Expect = 2e-15
Identities = 39/57 (68%), Positives = 47/57 (82%), Gaps = 1/57 (1%)
Frame = +3

Query: 318 HPALALVDDRLSTEGTGLSLGVSNPLIVWILLGVATLIWALFFVYASSLKE-DDDSG 485
HP ALVD+RLSTEGTGL LGVSNP + WIL+GV L+WA++F Y+S+L E DDDSG
Sbjct: 83 HPVFALVDERLSTEGTGLGLGVSNPKLTWILVGVTALVWAVYFTYSSTLPEGDDDSG 139


>tr|A9SEQ5|A9SEQ5_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_232256 PE=4 SV=1
Length = 64

Score = 85.1 bits (209), Expect = 2e-15
Identities = 39/57 (68%), Positives = 47/57 (82%), Gaps = 1/57 (1%)
Frame = +3

Query: 318 HPALALVDDRLSTEGTGLSLGVSNPLIVWILLGVATLIWALFFVYASSLKE-DDDSG 485
HP ALVD+RLSTEGTGL LGVSNP + WIL+GV L+WA++F Y+S+L E DDDSG
Sbjct: 5 HPVFALVDERLSTEGTGLGLGVSNPKLTWILVGVTALVWAVYFTYSSTLPEGDDDSG 61


>tr|A9PEP9|A9PEP9_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=2 SV=1
Length = 134

Score = 84.3 bits (207), Expect = 4e-15
Identities = 38/55 (69%), Positives = 48/55 (87%)
Frame = +3

Query: 321 PALALVDDRLSTEGTGLSLGVSNPLIVWILLGVATLIWALFFVYASSLKEDDDSG 485
PALALVD+R+STEGTGL G+SN L+VWILLGV LIWAL+F Y ++L+ED++SG
Sbjct: 77 PALALVDERMSTEGTGLPFGLSNNLLVWILLGVFALIWALYFTYTATLEEDEESG 131


>tr|B6TMB3|B6TMB3_MAIZE Photosystem II reaction center W protein
OS=Zea mays PE=2 SV=1
Length = 127

Score = 83.2 bits (204), Expect = 9e-15
Identities = 40/55 (72%), Positives = 47/55 (85%)
Frame = +3

Query: 321 PALALVDDRLSTEGTGLSLGVSNPLIVWILLGVATLIWALFFVYASSLKEDDDSG 485
P LALVD+R+STEGTGLSLG+SN L+ WILLGV LIW+L+ VY S+L EDDDSG
Sbjct: 70 PXLALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTVYTSTLDEDDDSG 124


>tr|Q9AXN9|Q9AXN9_PHYPA PSII subunit PsbW (Fragment)
OS=Physcomitrella patens PE=2 SV=1
Length = 69

Score = 82.4 bits (202), Expect = 2e-14
Identities = 39/57 (68%), Positives = 46/57 (80%), Gaps = 1/57 (1%)
Frame = +3

Query: 318 HPALALVDDRLSTEGTGLSLGVSNPLIVWILLGVATLIWALFFVYASSLKE-DDDSG 485
HP ALVD+RLSTEGTGL LG+SN + WIL+GV LIWAL+F Y+S+L E DDDSG
Sbjct: 10 HPVFALVDERLSTEGTGLGLGISNTKLTWILVGVTALIWALYFSYSSTLPEGDDDSG 66


>tr|A9T8Y1|A9T8Y1_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_9752 PE=4 SV=1
Length = 67

Score = 82.4 bits (202), Expect = 2e-14
Identities = 39/57 (68%), Positives = 46/57 (80%), Gaps = 1/57 (1%)
Frame = +3

Query: 318 HPALALVDDRLSTEGTGLSLGVSNPLIVWILLGVATLIWALFFVYASSLKE-DDDSG 485
HP ALVD+RLSTEGTGL LG+SN + WIL+GV LIWAL+F Y+S+L E DDDSG
Sbjct: 8 HPVFALVDERLSTEGTGLGLGISNTKLTWILVGVTALIWALYFSYSSTLPEGDDDSG 64


>tr|B7E500|B7E500_ORYSJ cDNA clone:001-011-D03, full insert sequence
OS=Oryza sativa subsp. japonica PE=2 SV=1
Length = 124

Score = 81.3 bits (199), Expect = 4e-14
Identities = 37/55 (67%), Positives = 48/55 (87%)
Frame = +3

Query: 321 PALALVDDRLSTEGTGLSLGVSNPLIVWILLGVATLIWALFFVYASSLKEDDDSG 485
PA+ALVD+R+STEGTGLSLG+SN L+ WILLGV LIW+L+ +Y S L+ED++SG
Sbjct: 66 PAMALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTIYTSDLEEDEESG 120


>tr|B6TM37|B6TM37_MAIZE Photosystem II reaction center W protein
OS=Zea mays PE=2 SV=1
Length = 127

Score = 81.3 bits (199), Expect = 4e-14
Identities = 38/55 (69%), Positives = 47/55 (85%)
Frame = +3

Query: 321 PALALVDDRLSTEGTGLSLGVSNPLIVWILLGVATLIWALFFVYASSLKEDDDSG 485
PALALVD+R+STEGTGLSLG+SN L+ WILLGV LIW+L+ +Y S L ED++SG
Sbjct: 69 PALALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTIYTSDLDEDEESG 123


>tr|B6T2W4|B6T2W4_MAIZE Photosystem II reaction center W protein
OS=Zea mays PE=2 SV=1
Length = 131

Score = 81.3 bits (199), Expect = 4e-14
Identities = 38/55 (69%), Positives = 47/55 (85%)
Frame = +3

Query: 321 PALALVDDRLSTEGTGLSLGVSNPLIVWILLGVATLIWALFFVYASSLKEDDDSG 485
PALALVD+R+STEGTGLSLG+SN L+ WILLGV LIW+L+ +Y S L ED++SG
Sbjct: 73 PALALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTIYTSDLDEDEESG 127