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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945865
Clone id YMU02A01NGRL0010_L05
Library
Length 485
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_L05. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
AGGGGAATCAATCAACGGAAAAAGGAGAATAATTCGCGTCTTTTTAAAGGCAAGAATAGA
GGAAGGCAAGACGCCAAAAAAAAACGAAACCGAAAAAAGGGAAATGAAGAATACAATTAC
GCAAAAGCAGCCTTTTAAGCACCAGCAACAACAGCACAGCCATCAACAGAAACAGGGAAA
ACACTACCAAAAGCCAAGAAAGTACTACAAGCCAAGAAAGCACTACAAGCTAAGAAAGCA
CCACGGTATTGCCCATATTCAATCAACTTATAGTAATACCAAAATTACTATAACAAATTG
CAAGGGAGAGAAAAGAACAGGGTCCTCTTCAGGGTGTTTAAGTGAGTTTAGGGGTTCCCG
TCGCTCGCGCTCGAATAAGTACGCAGCTCAAGCAACTGCGGAACGTGTCGCGCAAGCTGC
TACTCAACTTAAAATTGAGTCAGTCGAAGTGAAAACAAAAAAAAAAAAAAAAAAAAAAAA
AAAAA
■■Homology search results ■■ -
sp_hit_id Q3ZJ78
Definition sp|Q3ZJ78|RR11_PSEAK 30S ribosomal protein S11, chloroplastic OS=Pseudendoclonium akinetum
Align length 41
Score (bit) 46.6
E-value 5.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945865|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_L05, 5'
         (451 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3ZJ78|RR11_PSEAK 30S ribosomal protein S11, chloroplastic OS...    47   5e-05
sp|A7Z0R4|RS11_BACA2 30S ribosomal protein S11 OS=Bacillus amylo...    45   1e-04
sp|Q1XDJ4|RR11_PORYE 30S ribosomal protein S11, chloroplastic OS...    45   1e-04
sp|P51294|RR11_PORPU 30S ribosomal protein S11, chloroplastic OS...    45   1e-04
sp|P04969|RS11_BACSU 30S ribosomal protein S11 OS=Bacillus subti...    45   2e-04
sp|A8F9B1|RS11_BACP2 30S ribosomal protein S11 OS=Bacillus pumil...    45   2e-04
sp|Q81J19|RS11_BACCR 30S ribosomal protein S11 OS=Bacillus cereu...    44   2e-04
sp|Q6YQZ6|RS11_ONYPE 30S ribosomal protein S11 OS=Onion yellows ...    44   3e-04
sp|Q6HPN3|RS11_BACHK 30S ribosomal protein S11 OS=Bacillus thuri...    44   3e-04
sp|Q63H65|RS11_BACCZ 30S ribosomal protein S11 OS=Bacillus cereu...    44   3e-04
sp|Q73F70|RS11_BACC1 30S ribosomal protein S11 OS=Bacillus cereu...    44   3e-04
sp|Q81VQ5|RS11_BACAN 30S ribosomal protein S11 OS=Bacillus anthr...    44   3e-04
sp|A0R8K5|RS11_BACAH 30S ribosomal protein S11 OS=Bacillus thuri...    44   3e-04
sp|Q2NIY0|RS11_AYWBP 30S ribosomal protein S11 OS=Aster yellows ...    44   3e-04
sp|Q250K6|RS11_DESHY 30S ribosomal protein S11 OS=Desulfitobacte...    44   4e-04
sp|A7GK46|RS11_BACCN 30S ribosomal protein S11 OS=Bacillus cereu...    44   4e-04
sp|A5D5E6|RS11_PELTS 30S ribosomal protein S11 OS=Pelotomaculum ...    43   5e-04
sp|A4IJL3|RS11_GEOTN 30S ribosomal protein S11 OS=Geobacillus th...    43   5e-04
sp|A3DJJ9|RS11_CLOTH 30S ribosomal protein S11 OS=Clostridium th...    43   5e-04
sp|Q2LQD1|RS11_SYNAS 30S ribosomal protein S11 OS=Syntrophus aci...    43   7e-04
sp|Q7UIC6|RS11_RHOBA 30S ribosomal protein S11 OS=Rhodopirellula...    43   7e-04
sp|Q65P80|RS11_BACLD 30S ribosomal protein S11 OS=Bacillus liche...    43   7e-04
sp|P26870|RT11_MARPO Ribosomal protein S11, mitochondrial OS=Mar...    42   0.001
sp|Q98N34|RS11_RHILO 30S ribosomal protein S11 OS=Rhizobium loti...    42   0.001
sp|P59373|RS11_OCEIH 30S ribosomal protein S11 OS=Oceanobacillus...    42   0.001
sp|A4J137|RS11_DESRM 30S ribosomal protein S11 OS=Desulfotomacul...    42   0.001
sp|A0T0Z3|RR11_THAPS 30S ribosomal protein S11, chloroplastic OS...    42   0.001
sp|A0T0J9|RR11_PHATR 30S ribosomal protein S11, chloroplastic OS...    42   0.001
sp|Q1GVN5|RS11_SPHAL 30S ribosomal protein S11 OS=Sphingopyxis a...    42   0.001
sp|Q134V2|RS11_RHOPS 30S ribosomal protein S11 OS=Rhodopseudomon...    42   0.001

>sp|Q3ZJ78|RR11_PSEAK 30S ribosomal protein S11, chloroplastic
           OS=Pseudendoclonium akinetum GN=rps11 PE=3 SV=1
          Length = 130

 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 22/41 (53%), Positives = 32/41 (78%)
 Frame = +2

Query: 245 GIAHIQSTYSNTKITITNCKGEKRTGSSSGCLSEFRGSRRS 367
           G+ HIQST++NT +TITN KGE  + SS+G +  F+G+R+S
Sbjct: 20  GVVHIQSTFNNTIVTITNLKGEVISWSSAGAVG-FKGARKS 59


>sp|A7Z0R4|RS11_BACA2 30S ribosomal protein S11 OS=Bacillus
           amyloliquefaciens (strain FZB42) GN=rpsK PE=3 SV=1
          Length = 131

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 23/41 (56%), Positives = 31/41 (75%)
 Frame = +2

Query: 245 GIAHIQSTYSNTKITITNCKGEKRTGSSSGCLSEFRGSRRS 367
           GIAHI+ST++NT +TIT+  G   + SS+G L  FRGSR+S
Sbjct: 21  GIAHIRSTFNNTIVTITDTHGNALSWSSAGALG-FRGSRKS 60


>sp|Q1XDJ4|RR11_PORYE 30S ribosomal protein S11, chloroplastic
           OS=Porphyra yezoensis GN=rps11 PE=3 SV=1
          Length = 130

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 22/40 (55%), Positives = 31/40 (77%)
 Frame = +2

Query: 245 GIAHIQSTYSNTKITITNCKGEKRTGSSSGCLSEFRGSRR 364
           GI HI+ST++NT +TITN KGE  + SSSG  S F+G+++
Sbjct: 20  GITHIKSTFNNTIVTITNLKGETLSWSSSGA-SGFKGAKK 58


>sp|P51294|RR11_PORPU 30S ribosomal protein S11, chloroplastic
           OS=Porphyra purpurea GN=rps11 PE=3 SV=1
          Length = 130

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 22/40 (55%), Positives = 31/40 (77%)
 Frame = +2

Query: 245 GIAHIQSTYSNTKITITNCKGEKRTGSSSGCLSEFRGSRR 364
           GI HI+ST++NT +TITN KGE  + SSSG  S F+G+++
Sbjct: 20  GITHIKSTFNNTIVTITNLKGETLSWSSSGA-SGFKGAKK 58


>sp|P04969|RS11_BACSU 30S ribosomal protein S11 OS=Bacillus subtilis
           GN=rpsK PE=3 SV=1
          Length = 131

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 23/41 (56%), Positives = 31/41 (75%)
 Frame = +2

Query: 245 GIAHIQSTYSNTKITITNCKGEKRTGSSSGCLSEFRGSRRS 367
           GIAHI+ST++NT +TIT+  G   + SS+G L  FRGSR+S
Sbjct: 21  GIAHIRSTFNNTIVTITDTHGNAISWSSAGALG-FRGSRKS 60


>sp|A8F9B1|RS11_BACP2 30S ribosomal protein S11 OS=Bacillus pumilus
           (strain SAFR-032) GN=rpsK PE=3 SV=1
          Length = 131

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 23/41 (56%), Positives = 31/41 (75%)
 Frame = +2

Query: 245 GIAHIQSTYSNTKITITNCKGEKRTGSSSGCLSEFRGSRRS 367
           GIAHI+ST++NT +TIT+  G   + SS+G L  FRGSR+S
Sbjct: 21  GIAHIRSTFNNTIVTITDVHGNAISWSSAGALG-FRGSRKS 60


>sp|Q81J19|RS11_BACCR 30S ribosomal protein S11 OS=Bacillus cereus
           (strain ATCC 14579 / DSM 31) GN=rpsK PE=3 SV=1
          Length = 129

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 22/41 (53%), Positives = 31/41 (75%)
 Frame = +2

Query: 245 GIAHIQSTYSNTKITITNCKGEKRTGSSSGCLSEFRGSRRS 367
           GIAHI+ST++NT +T+T+  G   + SS+G L  FRGSR+S
Sbjct: 19  GIAHIRSTFNNTIVTLTDTHGNALSWSSAGALG-FRGSRKS 58


>sp|Q6YQZ6|RS11_ONYPE 30S ribosomal protein S11 OS=Onion yellows
           phytoplasma GN=rpsK PE=3 SV=1
          Length = 128

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 22/41 (53%), Positives = 30/41 (73%)
 Frame = +2

Query: 245 GIAHIQSTYSNTKITITNCKGEKRTGSSSGCLSEFRGSRRS 367
           GIAHI +T++NT +TIT+  G   T SS+G L  F+GSR+S
Sbjct: 18  GIAHIHTTFNNTIVTITDLNGNAVTWSSAGALG-FKGSRKS 57


>sp|Q6HPN3|RS11_BACHK 30S ribosomal protein S11 OS=Bacillus
           thuringiensis subsp. konkukian GN=rpsK PE=3 SV=1
          Length = 129

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 21/41 (51%), Positives = 31/41 (75%)
 Frame = +2

Query: 245 GIAHIQSTYSNTKITITNCKGEKRTGSSSGCLSEFRGSRRS 367
           G+AHI+ST++NT +T+T+  G   + SS+G L  FRGSR+S
Sbjct: 19  GVAHIRSTFNNTIVTLTDTHGNALSWSSAGALG-FRGSRKS 58


>sp|Q63H65|RS11_BACCZ 30S ribosomal protein S11 OS=Bacillus cereus
           (strain ZK / E33L) GN=rpsK PE=3 SV=1
          Length = 129

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 21/41 (51%), Positives = 31/41 (75%)
 Frame = +2

Query: 245 GIAHIQSTYSNTKITITNCKGEKRTGSSSGCLSEFRGSRRS 367
           G+AHI+ST++NT +T+T+  G   + SS+G L  FRGSR+S
Sbjct: 19  GVAHIRSTFNNTIVTLTDTHGNALSWSSAGALG-FRGSRKS 58
tr_hit_id Q1XG93
Definition tr|Q1XG93|Q1XG93_PHYPA Ribosomal protein S11 OS=Physcomitrella patens
Align length 69
Score (bit) 50.1
E-value 6.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945865|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_L05, 5'
         (451 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1XG93|Q1XG93_PHYPA Ribosomal protein S11 OS=Physcomitrella p...    50   6e-05
tr|Q7YDJ4|Q7YDJ4_9MAGN Small subunit ribosomal protein (Fragment...    49   2e-04
tr|Q7YDJ5|Q7YDJ5_9MAGN Small subunit ribosomal protein (Fragment...    48   3e-04
tr|Q7YDJ1|Q7YDJ1_9MAGN Small subunit ribosomal protein (Fragment...    48   3e-04
tr|Q7YDJ2|Q7YDJ2_ACHTR Small subunit ribosomal protein (Fragment...    47   4e-04
tr|Q7YDH1|Q7YDH1_HYDCA Small subunit ribosomal protein (Fragment...    47   4e-04
tr|Q7YDJ3|Q7YDJ3_CAUTH Small subunit ribosomal protein (Fragment...    47   6e-04
tr|Q7YDI3|Q7YDI3_AKEQU Small subunit ribosomal protein (Fragment...    47   6e-04
tr|Q7YAL5|Q7YAL5_CHAVU Ribosomal protein S11 OS=Chara vulgaris G...    47   6e-04
tr|Q8M1G6|Q8M1G6_CHAGL Ribosomal protein S11 OS=Chaetosphaeridiu...    46   8e-04
tr|Q7YDH0|Q7YDH0_BETNI Small subunit ribosomal protein (Fragment...    46   8e-04
tr|B1HMV6|B1HMV6_LYSSC 30S ribosomal protein S11 (BS11) OS=Lysin...    45   0.001
tr|Q2B2P2|Q2B2P2_9BACI 30S ribosomal protein S11 OS=Bacillus sp....    45   0.002
tr|Q7YDH8|Q7YDH8_9MAGN Small subunit ribosomal protein (Fragment...    45   0.002
tr|Q7YDH7|Q7YDH7_9MAGN Small subunit ribosomal protein (Fragment...    45   0.002
tr|A6YE90|A6YE90_CHLAT Ribosomal protein S11 OS=Chlorokybus atmo...    45   0.002
tr|B6R0X7|B6R0X7_9RHOB Ribosomal protein S11 OS=Pseudovibrio sp....    45   0.002
tr|B4AN06|B4AN06_BACPU Ribosomal protein S11 OS=Bacillus pumilus...    45   0.002
tr|A0NWF9|A0NWF9_9RHOB 30S ribosomal protein S11 OS=Labrenzia ag...    45   0.002
tr|Q7YDH4|Q7YDH4_9MAGN Small subunit ribosomal protein (Fragment...    45   0.002
tr|B1VAC2|B1VAC2_PHYAS 30S ribosomal protein S11 OS=Phytoplasma ...    44   0.003
tr|A9VPA3|A9VPA3_BACWK Ribosomal protein S11 OS=Bacillus weihens...    44   0.003
tr|Q3EJF7|Q3EJF7_BACTI SSU ribosomal protein S11P OS=Bacillus th...    44   0.003
tr|B7IT45|B7IT45_BACCE Ribosomal protein S11 OS=Bacillus cereus ...    44   0.003
tr|B7HJ74|B7HJ74_BACCE Ribosomal protein S11 OS=Bacillus cereus ...    44   0.003
tr|B5UVN0|B5UVN0_BACCE 30S ribosomal protein S11 OS=Bacillus cer...    44   0.003
tr|A4U4G4|A4U4G4_9PROT 30S ribosomal protein S11 OS=Magnetospiri...    44   0.003
tr|A1HQN8|A1HQN8_9FIRM Ribosomal protein S11 OS=Thermosinus carb...    44   0.003
tr|Q7YDJ0|Q7YDJ0_SYMAL Small subunit ribosomal protein (Fragment...    44   0.003
tr|Q7YDI9|Q7YDI9_ABEGR Small subunit ribosomal protein (Fragment...    44   0.003

>tr|Q1XG93|Q1XG93_PHYPA Ribosomal protein S11 OS=Physcomitrella
           patens GN=rps11 PE=3 SV=1
          Length = 118

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 33/69 (47%), Positives = 41/69 (59%)
 Frame = +2

Query: 245 GIAHIQSTYSNTKITITNCKGEKRTGSSSGCLSEFRGSRRSRSNKYXXXXXXXXXXXXXX 424
           GIA+I+ST SNT IT+T+ KG+ +T SSSG L  F+GSR  RS  Y              
Sbjct: 8   GIAYIRSTLSNTIITVTDYKGDTKTWSSSGSLG-FKGSR--RSTNYAAQATAENAARTAI 64

Query: 425 XLKIESVEV 451
            L I+SVEV
Sbjct: 65  QLGIKSVEV 73


>tr|Q7YDJ4|Q7YDJ4_9MAGN Small subunit ribosomal protein (Fragment)
           OS=Anemone quinquefolia GN=rps11 PE=3 SV=1
          Length = 134

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 20/43 (46%), Positives = 33/43 (76%)
 Frame = +2

Query: 254 HIQSTYSNTKITITNCKGEKRTGSSSGCLSEFRGSRRSRSNKY 382
           H+   ++NT +T+T+ +G K+TG+S+GCL EF+G  RSR ++Y
Sbjct: 32  HLPPIHNNTFVTVTDARGNKKTGASAGCLEEFKG--RSRLSRY 72


>tr|Q7YDJ5|Q7YDJ5_9MAGN Small subunit ribosomal protein (Fragment)
           OS=Clematis sp. Qiu 95085-2 GN=rps11 PE=3 SV=1
          Length = 134

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 21/40 (52%), Positives = 31/40 (77%), Gaps = 1/40 (2%)
 Frame = +2

Query: 254 HIQSTYSNTKITITNCKGEKRTGSSSGCLSEFRG-SRRSR 370
           H+    +NT +T+T+ +G K+TG+S+GCL EF+G SRRSR
Sbjct: 32  HLPPIRNNTFVTVTDARGNKKTGASTGCLKEFKGRSRRSR 71


>tr|Q7YDJ1|Q7YDJ1_9MAGN Small subunit ribosomal protein (Fragment)
           OS=Diphylleia grayi GN=rps11 PE=3 SV=1
          Length = 134

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 21/40 (52%), Positives = 31/40 (77%), Gaps = 1/40 (2%)
 Frame = +2

Query: 254 HIQSTYSNTKITITNCKGEKRTGSSSGCLSEF-RGSRRSR 370
           H+   ++NT +T+T+ +G K+TG+S+GCL EF RGSR SR
Sbjct: 32  HLPPIHNNTFVTVTDARGNKKTGASAGCLEEFKRGSRLSR 71


>tr|Q7YDJ2|Q7YDJ2_ACHTR Small subunit ribosomal protein (Fragment)
           OS=Achlys triphylla GN=rps11 PE=3 SV=1
          Length = 134

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 17/39 (43%), Positives = 29/39 (74%)
 Frame = +2

Query: 248 IAHIQSTYSNTKITITNCKGEKRTGSSSGCLSEFRGSRR 364
           + H+   ++NT +T+T+ +G K+TG+S+GCL EF+G  R
Sbjct: 30  LVHLPPIHNNTFVTVTDARGNKKTGASAGCLEEFKGGSR 68


>tr|Q7YDH1|Q7YDH1_HYDCA Small subunit ribosomal protein (Fragment)
           OS=Hydrastis canadensis GN=rps11 PE=3 SV=1
          Length = 132

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 18/37 (48%), Positives = 28/37 (75%)
 Frame = +2

Query: 254 HIQSTYSNTKITITNCKGEKRTGSSSGCLSEFRGSRR 364
           H+   ++NT +T+T+ KG K+TG+S+GCL EF+G  R
Sbjct: 30  HLLPIHNNTFVTVTDAKGNKKTGASAGCLEEFKGGSR 66


>tr|Q7YDJ3|Q7YDJ3_CAUTH Small subunit ribosomal protein (Fragment)
           OS=Caulophyllum thalictroides GN=rps11 PE=3 SV=1
          Length = 134

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 17/37 (45%), Positives = 28/37 (75%)
 Frame = +2

Query: 254 HIQSTYSNTKITITNCKGEKRTGSSSGCLSEFRGSRR 364
           H+   ++NT +T+T+ +G K+TG+S+GCL EF+G  R
Sbjct: 32  HLPPIHNNTFVTVTDARGNKKTGASAGCLEEFKGGSR 68


>tr|Q7YDI3|Q7YDI3_AKEQU Small subunit ribosomal protein (Fragment)
           OS=Akebia quinata GN=rps11 PE=3 SV=1
          Length = 148

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 17/37 (45%), Positives = 28/37 (75%)
 Frame = +2

Query: 254 HIQSTYSNTKITITNCKGEKRTGSSSGCLSEFRGSRR 364
           H+   ++NT +T+T+ +G K+TG+S+GCL EF+G  R
Sbjct: 46  HLPPIHNNTFVTVTDARGNKKTGASAGCLEEFKGGSR 82


>tr|Q7YAL5|Q7YAL5_CHAVU Ribosomal protein S11 OS=Chara vulgaris
           GN=rps11 PE=3 SV=1
          Length = 131

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 32/69 (46%), Positives = 40/69 (57%)
 Frame = +2

Query: 245 GIAHIQSTYSNTKITITNCKGEKRTGSSSGCLSEFRGSRRSRSNKYXXXXXXXXXXXXXX 424
           GIA+IQST SNT ITIT+  G+ ++ SSSG +  F+GSR  RS  Y              
Sbjct: 21  GIAYIQSTLSNTIITITDSFGDTKSWSSSGSVG-FKGSR--RSTNYAAQATAENVARAAI 77

Query: 425 XLKIESVEV 451
            L I+SVEV
Sbjct: 78  PLGIKSVEV 86


>tr|Q8M1G6|Q8M1G6_CHAGL Ribosomal protein S11 OS=Chaetosphaeridium
           globosum GN=rps11 PE=3 SV=1
          Length = 116

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 24/41 (58%), Positives = 31/41 (75%)
 Frame = +2

Query: 245 GIAHIQSTYSNTKITITNCKGEKRTGSSSGCLSEFRGSRRS 367
           GIA+IQST +NT ITIT+ KG  +   SSGC+  F+GS+RS
Sbjct: 6   GIAYIQSTLNNTIITITDSKGHIKVWCSSGCVG-FKGSKRS 45