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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945866
Clone id YMU02A01NGRL0010_L07
Library
Length 314
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_L07. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TGAAGGGTTCAGACTTTGGATGGAATGGTTCAACATTTTGAGAGTGGACAACAAGTCTCC
TGATGATGATTTATATCTGGTATATGGACAAATGGAAGCCTTATAAAACCAATCTATTTT
ATGTATCTCGCCAATTCCTTAGACAGTGCAGGTACCAACAGTCTTTTTAAAGTACATATA
CTAGCAAAGCTTGAATTGCGCTTTTATGCGAAGTCGAATGCCTTAAACTTCATGCGGTAC
TTGTCTATCTGTGACGTAAAACTTAATGAATTTGTTTTTTGTCCNAAAAAAAAAAAAAAA
AAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P24358
Definition sp|P24358|VF05_VACCW 36 kDa major membrane protein OS=Vaccinia virus (strain Western Reserve)
Align length 53
Score (bit) 29.3
E-value 6.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945866|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_L07, 5'
         (285 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P24358|VF05_VACCW 36 kDa major membrane protein OS=Vaccinia v...    29   6.3  
sp|Q00320|VF05_VACCP 36 kDa major membrane protein OS=Vaccinia v...    29   6.3  
sp|P21014|VF05_VACCC 36 kDa major membrane protein OS=Vaccinia v...    29   8.3  

>sp|P24358|VF05_VACCW 36 kDa major membrane protein OS=Vaccinia
           virus (strain Western Reserve) GN=F5L PE=2 SV=1
          Length = 322

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -1

Query: 159 VGTCTV*GIGEIHKIDWFYKASICPYTRYKSSSGDLLSTLKMLNHSIQSLNPS 1
           V  CT   +  I+   W+Y   +        +SG + S +K +N S+  LN S
Sbjct: 29  VHICTHTNVSHINHTSWYYNDKVIALATEDKTSGYISSFIKRVNISLTCLNIS 81


>sp|Q00320|VF05_VACCP 36 kDa major membrane protein OS=Vaccinia
           virus (strain L-IVP) GN=F13 PE=2 SV=1
          Length = 321

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -1

Query: 159 VGTCTV*GIGEIHKIDWFYKASICPYTRYKSSSGDLLSTLKMLNHSIQSLNPS 1
           V  CT   +  I+   W+Y   +        +SG + S +K +N S+  LN S
Sbjct: 29  VHICTHTNVSHINHTSWYYNDKVIALATEDKTSGYISSFIKRVNISLTCLNIS 81


>sp|P21014|VF05_VACCC 36 kDa major membrane protein OS=Vaccinia
           virus (strain Copenhagen) GN=F5L PE=4 SV=1
          Length = 321

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -1

Query: 159 VGTCTV*GIGEIHKIDWFYKASICPYTRYKSSSGDLLSTLKMLNHSIQSLNPS 1
           V  CT   +  I+   W+Y   +        +SG + S +K +N S+  LN S
Sbjct: 29  VHICTHTDVSHINHTSWYYNDKVIALATEDKTSGYISSFIKRVNISLTCLNIS 81
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945866|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_L07, 5'
         (285 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******