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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945874
Clone id YMU02A01NGRL0010_L18
Library
Length 576
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_L18. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCACCAGGCAGCGACAGAGCCCTCGCAACCGGTTAGAGGTAAAAGGATGCCTTTGCTTCA
TGCTGCTCATCATCTTGGTCTTTCTGTCATGACATCTGCAACGATTAACCAAGGCAATCT
TGCCAAAAACCTTAATCCTGATGTCCGTAACAAGAGTCCTGAACTCGGCGAGCAGCGGAC
TGATGCACAAGCAGCCATACAATTTGCAAGGACAACCCCTGGTATTGTTACATCTCTTCT
AGGAATGCGCAGAGTCATGCATGTGGAAGAGAACGGTTCTTTGATAAGGTACCCTGCACA
CTCACGCACCTAGGAGTTCAATAGTGTTTGCATGACCTATCATTTAGGCTCTAGTTTGAG
TGCGGTACTTAGCAGTTGGAATAGTCTAGAGGGGAATGGCTGTTTTTTGGTCCTCTGATG
GTCAATCGTCCTATGCTTATATTGTTGCCGGTGCTGGCATCTACTCATACAGAATTGGGA
AAGGTCTTTGTTGAGAAGGTCAGATTGTAGTATGGTTTCGACTTATCTCTGGGAATGATC
TTTTGTATGCGGACTTGAAAATGGACTTGAAATTGA
■■Homology search results ■■ -
sp_hit_id A0KR35
Definition sp|A0KR35|DNAA_SHESA Chromosomal replication initiator protein dnaA OS=Shewanella sp. (strain ANA-3)
Align length 106
Score (bit) 31.2
E-value 3.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945874|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_L18, 5'
         (576 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A0KR35|DNAA_SHESA Chromosomal replication initiator protein d...    31   3.9  
sp|Q0I0U8|DNAA_SHESR Chromosomal replication initiator protein d...    31   5.1  
sp|Q0HPD4|DNAA_SHESM Chromosomal replication initiator protein d...    30   6.6  

>sp|A0KR35|DNAA_SHESA Chromosomal replication initiator protein dnaA
           OS=Shewanella sp. (strain ANA-3) GN=dnaA PE=3 SV=1
          Length = 460

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 30/106 (28%), Positives = 42/106 (39%), Gaps = 13/106 (12%)
 Frame = +2

Query: 17  EPSQPVRGKRMPLLHAAHHLGLSVMTSATINQGNLAKNLNPD------VRNKSPELGEQR 178
           EP+ PV   R+P       +G S  T+  +   N   N+NP       V  KS +LG+  
Sbjct: 88  EPA-PVAAVRVPNPQTKASVGTSFNTTEPVANANHRSNINPTYQFDNFVEGKSNQLGK-- 144

Query: 179 TDAQAAIQFARTTPGIVTSL-------LGMRRVMHVEENGSLIRYP 295
               AA+Q A    G    L       LG   ++H   NG +   P
Sbjct: 145 ---AAALQVAENPGGAYNPLFLYGGTGLGKTHLLHAVGNGIIKNNP 187


>sp|Q0I0U8|DNAA_SHESR Chromosomal replication initiator protein dnaA
           OS=Shewanella sp. (strain MR-7) GN=dnaA PE=3 SV=1
          Length = 460

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 30/106 (28%), Positives = 42/106 (39%), Gaps = 13/106 (12%)
 Frame = +2

Query: 17  EPSQPVRGKRMPLLHAAHHLGLSVMTSATINQGNLAKNLNPD------VRNKSPELGEQR 178
           EP+ PV   R+P       +G S  T+  +   N   N+NP       V  KS +LG+  
Sbjct: 88  EPA-PVAAVRVPNPQTKASVGTSFNTTEPVVNANHRSNINPTYQFDNFVEGKSNQLGK-- 144

Query: 179 TDAQAAIQFARTTPGIVTSL-------LGMRRVMHVEENGSLIRYP 295
               AA+Q A    G    L       LG   ++H   NG +   P
Sbjct: 145 ---AAALQVAENPGGAYNPLFLYGGTGLGKTHLLHAVGNGIIKNNP 187


>sp|Q0HPD4|DNAA_SHESM Chromosomal replication initiator protein dnaA
           OS=Shewanella sp. (strain MR-4) GN=dnaA PE=3 SV=1
          Length = 460

 Score = 30.4 bits (67), Expect = 6.6
 Identities = 30/106 (28%), Positives = 42/106 (39%), Gaps = 13/106 (12%)
 Frame = +2

Query: 17  EPSQPVRGKRMPLLHAAHHLGLSVMTSATINQGNLAKNLNPD------VRNKSPELGEQR 178
           EP+ PV   R+P       +G S  T+  +   N   N+NP       V  KS +LG+  
Sbjct: 88  EPA-PVAAVRVPNPQTKASVGTSFNTTEPVANTNHRSNINPTYQFDNFVEGKSNQLGK-- 144

Query: 179 TDAQAAIQFARTTPGIVTSL-------LGMRRVMHVEENGSLIRYP 295
               AA+Q A    G    L       LG   ++H   NG +   P
Sbjct: 145 ---AAALQVAENPGGAYNPLFLYGGTGLGKTHLLHAVGNGIIKNNP 187
tr_hit_id A9S439
Definition tr|A9S439|A9S439_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 97
Score (bit) 102.0
E-value 2.0e-20
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945874|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_L18, 5'
         (576 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9S439|A9S439_PHYPA Predicted protein OS=Physcomitrella paten...   102   2e-20
tr|O66660|O66660_AQUAE Putative uncharacterized protein OS=Aquif...    62   2e-08
tr|A8UU21|A8UU21_9AQUI Putative uncharacterized protein OS=Hydro...    62   2e-08
tr|Q110Y5|Q110Y5_TRIEI Aldo/keto reductase OS=Trichodesmium eryt...    61   4e-08
tr|B3V6B9|B3V6B9_9CREN Aldo/keto reductase family protein OS=unc...    60   1e-07
tr|Q5V161|Q5V161_HALMA Aldo/keto reductase OS=Haloarcula marismo...    59   1e-07
tr|Q4C3B9|Q4C3B9_CROWT Aldo/keto reductase OS=Crocosphaera watso...    59   2e-07
tr|Q01Q63|Q01Q63_SOLUE Aldo/keto reductase OS=Solibacter usitatu...    57   9e-07
tr|B3V6Z7|B3V6Z7_9CREN Aldo/keto reductase OS=uncultured marine ...    56   2e-06
tr|B3T444|B3T444_9CREN Putative Aldo/keto reductase family prote...    55   2e-06
tr|A7D5H5|A7D5H5_9EURY Aldo/keto reductase OS=Halorubrum lacuspr...    55   4e-06
tr|A9A2C2|A9A2C2_NITMS Aldo/keto reductase OS=Nitrosopumilus mar...    54   5e-06
tr|B4U9V7|B4U9V7_HYDS0 Aldo/keto reductase OS=Hydrogenobaculum s...    53   1e-05
tr|B2V908|B2V908_SULSY Aldo/keto reductase OS=Sulfurihydrogenibi...    53   1e-05
tr|B5EMM6|B5EMM6_ACIF5 Aldo/keto reductase OS=Acidithiobacillus ...    50   7e-05
tr|B7J767|B7J767_THIFE Oxidoreductase, aldo/keto reductase famil...    50   7e-05
tr|O74073|O74073_CENSY Putative uncharacterized protein OS=Cenar...    50   7e-05
tr|Q9HSE6|Q9HSE6_HALSA Putative uncharacterized protein OS=Halob...    47   7e-04
tr|B0R305|B0R305_HALS3 Putative oxidoreductase (Aldo-keto reduct...    47   7e-04
tr|A8V0V7|A8V0V7_9AQUI Putative uncharacterized protein (Fragmen...    45   0.002
tr|A0RWV1|A0RWV1_CENSY Oxidoreductase OS=Cenarchaeum symbiosum G...    45   0.002
tr|O74052|O74052_CENSY Putative uncharacterized protein OS=Cenar...    45   0.002
tr|B8GUC0|B8GUC0_9GAMM Aldo/keto reductase OS=Thioalkalivibrio s...    45   0.003
tr|Q18E04|Q18E04_HALWD Aldo/keto reductase family protein OS=Hal...    45   0.003
tr|A6NR74|A6NR74_9BACE Putative uncharacterized protein OS=Bacte...    40   0.12 
tr|Q8TTK4|Q8TTK4_METAC Aldo/keto reductase OS=Methanosarcina ace...    40   0.12 
tr|Q3A3T1|Q3A3T1_PELCD Predicted oxidoreductases of the aldo/ket...    38   0.35 
tr|B1QJ06|B1QJ06_CLOBO Oxidoreductase, aldo/keto reductase famil...    38   0.35 
tr|B1IKW1|B1IKW1_CLOBK Oxidoreductase, aldo/keto reductase famil...    38   0.45 
tr|A7GDJ3|A7GDJ3_CLOBL Oxidoreductase, aldo/keto reductase famil...    37   0.77 

>tr|A9S439|A9S439_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_74319 PE=4 SV=1
          Length = 447

 Score =  102 bits (253), Expect = 2e-20
 Identities = 53/97 (54%), Positives = 67/97 (69%)
 Frame = +2

Query: 8   AATEPSQPVRGKRMPLLHAAHHLGLSVMTSATINQGNLAKNLNPDVRNKSPELGEQRTDA 187
           AAT  SQ ++GKRM LL AA  LG+SV+ SA++ Q  L K L  + R    ELG+  TDA
Sbjct: 343 AATINSQLMKGKRMSLLSAAQQLGVSVVASASLMQAILCKGLAEETRTSFSELGKNATDA 402

Query: 188 QAAIQFARTTPGIVTSLLGMRRVMHVEENGSLIRYPA 298
           Q A+QF RTTPGI+T+L GMR + HVEEN  ++ YPA
Sbjct: 403 QCALQFVRTTPGILTALAGMRTMAHVEENTGILSYPA 439


>tr|O66660|O66660_AQUAE Putative uncharacterized protein OS=Aquifex
           aeolicus GN=aq_323 PE=4 SV=1
          Length = 336

 Score = 62.0 bits (149), Expect = 2e-08
 Identities = 38/101 (37%), Positives = 51/101 (50%)
 Frame = +2

Query: 5   QAATEPSQPVRGKRMPLLHAAHHLGLSVMTSATINQGNLAKNLNPDVRNKSPELGEQRTD 184
           +A T  +Q V GK +  L AA  LG+    SATI QGN+       V  +  E      D
Sbjct: 232 EAFTLKNQQVSGKTLSTLEAAQELGVYTYISATIYQGNVIGR----VPERLKEFFGLEND 287

Query: 185 AQAAIQFARTTPGIVTSLLGMRRVMHVEENGSLIRYPAHSR 307
              AIQF R+TPG+ T L+GM +  H+ EN  ++  P   R
Sbjct: 288 VHVAIQFVRSTPGVGTFLIGMSKTQHLLENIKVLEIPPVER 328


>tr|A8UU21|A8UU21_9AQUI Putative uncharacterized protein
           OS=Hydrogenivirga sp. 128-5-R1-1 GN=HG1285_16620 PE=4
           SV=1
          Length = 336

 Score = 62.0 bits (149), Expect = 2e-08
 Identities = 34/91 (37%), Positives = 55/91 (60%)
 Frame = +2

Query: 2   HQAATEPSQPVRGKRMPLLHAAHHLGLSVMTSATINQGNLAKNLNPDVRNKSPELGEQRT 181
           H+A +  +Q + GK +  L A   LG+ V TSA++ QGN+   + P ++++    G  + 
Sbjct: 231 HEAFSLKNQTLGGKEVSTLEACRELGIYVYTSASLYQGNVIGRVPPQLKDR---FGVDK- 286

Query: 182 DAQAAIQFARTTPGIVTSLLGMRRVMHVEEN 274
           D   A+QF R+TPG+ T+L+GM R  H+ EN
Sbjct: 287 DVLVALQFVRSTPGVGTALVGMSRPEHMIEN 317


>tr|Q110Y5|Q110Y5_TRIEI Aldo/keto reductase OS=Trichodesmium
           erythraeum (strain IMS101) GN=Tery_2756 PE=4 SV=1
          Length = 367

 Score = 61.2 bits (147), Expect = 4e-08
 Identities = 37/98 (37%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
 Frame = +2

Query: 5   QAATEPSQPVRGKRMPLLHAAHHLGLSVMTSATINQGNLAKNLNPDVRNKSPELGEQ-RT 181
           +A   P+Q V GK +P + AA+ LG++ + SA+I Q   AKN     +     L +  +T
Sbjct: 260 EAVITPTQFVDGKILPAITAANKLGINAIASASIAQ---AKNFEQLPKKIMTALSKSLKT 316

Query: 182 DAQAAIQFARTTPGIVTSLLGMRRVMHVEENGSLIRYP 295
           DA +A+QF R+ PG+ ++L+GM+   HV EN +L   P
Sbjct: 317 DALSALQFTRSVPGLCSALVGMKSPEHVAENLTLTSIP 354


>tr|B3V6B9|B3V6B9_9CREN Aldo/keto reductase family protein
           OS=uncultured marine crenarchaeote AD1000-207-H3 PE=4
           SV=1
          Length = 368

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 38/108 (35%), Positives = 54/108 (50%)
 Frame = +2

Query: 5   QAATEPSQPVRGKRMPLLHAAHHLGLSVMTSATINQGNLAKNLNPDVRNKSPELGEQRTD 184
           QA    +  + GK + +L AAH   L V TS  + QG L         N  PE G   T 
Sbjct: 261 QAYITKNHSMGGKTVSVLEAAHEFNLGVFTSVPLMQGKLLTT------NTIPEFGNHSTS 314

Query: 185 AQAAIQFARTTPGIVTSLLGMRRVMHVEENGSLIRYPAHSRT*EFNSV 328
            +  +QF R+TPGI   L+G +   HV+EN ++++ P  S   EFN +
Sbjct: 315 VRL-LQFVRSTPGITAPLIGHKSEPHVKENMNVMKIPQLSEL-EFNDL 360


>tr|Q5V161|Q5V161_HALMA Aldo/keto reductase OS=Haloarcula
           marismortui GN=rrnAC1858 PE=4 SV=1
          Length = 361

 Score = 59.3 bits (142), Expect = 1e-07
 Identities = 38/76 (50%), Positives = 42/76 (55%)
 Frame = +2

Query: 65  AHHLGLSVMTSATINQGNLAKNLNPDVRNKSPELGEQRTDAQAAIQFARTTPGIVTSLLG 244
           AH  GL V TSA+I QG LA  L  DV  K    GE  T AQ AI FAR+ PG+  SL+G
Sbjct: 277 AHEAGLDVFTSASIMQGQLAAELPDDVAAKLS--GE--TSAQRAINFARSAPGVTCSLVG 332

Query: 245 MRRVMHVEENGSLIRY 292
              V H  EN    RY
Sbjct: 333 TGSVEHARENVDAGRY 348


>tr|Q4C3B9|Q4C3B9_CROWT Aldo/keto reductase OS=Crocosphaera watsonii
           GN=CwatDRAFT_3599 PE=4 SV=1
          Length = 392

 Score = 58.9 bits (141), Expect = 2e-07
 Identities = 28/88 (31%), Positives = 54/88 (61%)
 Frame = +2

Query: 20  PSQPVRGKRMPLLHAAHHLGLSVMTSATINQGNLAKNLNPDVRNKSPELGEQRTDAQAAI 199
           P+Q + GK + +L AA HLG+  + S +I++G +A+ +  D+ +          D Q  +
Sbjct: 268 PTQTINGKAVSMLEAASHLGIFPVASHSIHKGRIAQRIPEDIISAFD--NNFLNDYQRGL 325

Query: 200 QFARTTPGIVTSLLGMRRVMHVEENGSL 283
           QF R+TP + ++L+GM ++ H+++N +L
Sbjct: 326 QFTRSTPALASALVGMTKLEHIKQNLAL 353


>tr|Q01Q63|Q01Q63_SOLUE Aldo/keto reductase OS=Solibacter usitatus
           (strain Ellin6076) GN=Acid_7296 PE=4 SV=1
          Length = 332

 Score = 56.6 bits (135), Expect = 9e-07
 Identities = 32/79 (40%), Positives = 49/79 (62%)
 Frame = +2

Query: 53  LLHAAHHLGLSVMTSATINQGNLAKNLNPDVRNKSPELGEQRTDAQAAIQFARTTPGIVT 232
           +L AA  LG++ + SAT++Q  +   +   + ++ P+L    T+AQ AIQF R+TPGI  
Sbjct: 243 VLDAALRLGIAAVASATLSQTRVLGQMPERLASRLPDL---ETNAQRAIQFTRSTPGIAA 299

Query: 233 SLLGMRRVMHVEENGSLIR 289
           +L+GM R  HV EN  + R
Sbjct: 300 ALVGMSRREHVLENLGVAR 318


>tr|B3V6Z7|B3V6Z7_9CREN Aldo/keto reductase OS=uncultured marine
           crenarchaeote SAT1000-21-C11 PE=4 SV=1
          Length = 366

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 39/108 (36%), Positives = 52/108 (48%)
 Frame = +2

Query: 5   QAATEPSQPVRGKRMPLLHAAHHLGLSVMTSATINQGNLAKNLNPDVRNKSPELGEQRTD 184
           QA    +  V GK +  L AA    L V TS  I QG L         N  PE G   T 
Sbjct: 261 QAYLTKNHNVGGKTVSALEAAKEFNLGVFTSVPIMQGKLLAT------NAIPEFGNFSTS 314

Query: 185 AQAAIQFARTTPGIVTSLLGMRRVMHVEENGSLIRYPAHSRT*EFNSV 328
            +  +QF R+TPGI   L+G +   HV+EN ++++ P  S   EFN +
Sbjct: 315 VRL-LQFVRSTPGITAPLIGHKLESHVKENMNVMKIPPLSEL-EFNDL 360


>tr|B3T444|B3T444_9CREN Putative Aldo/keto reductase family protein
           OS=uncultured marine crenarchaeote HF4000_ANIW133K13
           GN=ALOHA_HF4000ANIW133K13ctg1g28 PE=4 SV=1
          Length = 366

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 37/108 (34%), Positives = 59/108 (54%)
 Frame = +2

Query: 5   QAATEPSQPVRGKRMPLLHAAHHLGLSVMTSATINQGNLAKNLNPDVRNKSPELGEQRTD 184
           QA  + +Q V    + +L  A   G+ V TS  + QG L +     ++NK PE   Q + 
Sbjct: 260 QAYMQKNQLVDSNELSILELAKQSGIGVFTSVPLMQGKLLEW----IKNK-PEFTHQ-SP 313

Query: 185 AQAAIQFARTTPGIVTSLLGMRRVMHVEENGSLIRYPAHSRT*EFNSV 328
           A  A+QF R+TPG++  L+G +  +HV+EN  ++  P  S   EF+S+
Sbjct: 314 AVNALQFVRSTPGVLAPLVGQKSDLHVKENLQVLEIPPFSEE-EFSSL 360