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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945887
Clone id YMU02A01NGRL0010_M11
Library
Length 325
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_M11. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TTCCAGATCGCTATGGAGAACGAAACGGTGGCTATACCCGCATCATCAGAACCATGCCCA
GAAAAGGGGACAATGCACCTATGGCTTTCATTGAGCTTGTTTAACTGAACGAATTCATTG
CTCTGCTGCTTCCTTGTCTCACAAAGTTATTTTCTGTATTTAGCAAGCCAGACATCCAAA
GAGCTCTGGAGAGAATTTTGTGCATGCAGAAGTAATCTCGAGTGAATACATTCTACAACA
TGTTCTCATAGAGGTTGTTATGGCTACATGAAGTTCTCAAATTTTTTTGGCGCCCAGCAA
AAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id O80363
Definition sp|O80363|RK17_TOBAC 50S ribosomal protein L17, chloroplastic OS=Nicotiana tabacum
Align length 33
Score (bit) 69.3
E-value 6.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945887|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_M11, 5'
         (298 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O80363|RK17_TOBAC 50S ribosomal protein L17, chloroplastic OS...    69   6e-12
sp|Q9M385|RK17_ARATH 50S ribosomal protein L17, chloroplastic OS...    69   6e-12
sp|A5GVY4|RL17_SYNR3 50S ribosomal protein L17 OS=Synechococcus ...    59   6e-09
sp|Q0ID29|RL17_SYNS3 50S ribosomal protein L17 OS=Synechococcus ...    59   8e-09
sp|Q7V522|RL17_PROMM 50S ribosomal protein L17 OS=Prochlorococcu...    59   1e-08
sp|A2CC52|RL17_PROM3 50S ribosomal protein L17 OS=Prochlorococcu...    59   1e-08
sp|Q7UZW7|RL17_PROMP 50S ribosomal protein L17 OS=Prochlorococcu...    58   1e-08
sp|Q3AW69|RL17_SYNS9 50S ribosomal protein L17 OS=Synechococcus ...    58   2e-08
sp|Q7U4H6|RL17_SYNPX 50S ribosomal protein L17 OS=Synechococcus ...    57   3e-08
sp|A2BYR2|RL17_PROM5 50S ribosomal protein L17 OS=Prochlorococcu...    57   3e-08
sp|A3PF24|RL17_PROM0 50S ribosomal protein L17 OS=Prochlorococcu...    57   3e-08
sp|Q7V9Y6|RL17_PROMA 50S ribosomal protein L17 OS=Prochlorococcu...    57   4e-08
sp|B0JY37|RL17_MICAN 50S ribosomal protein L17 OS=Microcystis ae...    56   6e-08
sp|B0C429|RL17_ACAM1 50S ribosomal protein L17 OS=Acaryochloris ...    56   6e-08
sp|Q0S3E6|RL17_RHOSR 50S ribosomal protein L17 OS=Rhodococcus sp...    55   8e-08
sp|Q3AMQ4|RL17_SYNSC 50S ribosomal protein L17 OS=Synechococcus ...    55   1e-07
sp|A2BTB4|RL17_PROMS 50S ribosomal protein L17 OS=Prochlorococcu...    55   1e-07
sp|Q318K8|RL17_PROM9 50S ribosomal protein L17 OS=Prochlorococcu...    55   1e-07
sp|A8G738|RL17_PROM2 50S ribosomal protein L17 OS=Prochlorococcu...    55   1e-07
sp|A6Q1K5|RL17_NITSB 50S ribosomal protein L17 OS=Nitratiruptor ...    55   1e-07
sp|A3CK91|RL17_STRSV 50S ribosomal protein L17 OS=Streptococcus ...    54   2e-07
sp|Q8CWU8|RL17_STRR6 50S ribosomal protein L17 OS=Streptococcus ...    54   2e-07
sp|Q48VS2|RL17_STRPM 50S ribosomal protein L17 OS=Streptococcus ...    54   2e-07
sp|A2RC41|RL17_STRPG 50S ribosomal protein L17 OS=Streptococcus ...    54   2e-07
sp|Q1J8Y6|RL17_STRPF 50S ribosomal protein L17 OS=Streptococcus ...    54   2e-07
sp|Q1JJ34|RL17_STRPD 50S ribosomal protein L17 OS=Streptococcus ...    54   2e-07
sp|Q1JNZ0|RL17_STRPC 50S ribosomal protein L17 OS=Streptococcus ...    54   2e-07
sp|Q1JE32|RL17_STRPB 50S ribosomal protein L17 OS=Streptococcus ...    54   2e-07
sp|Q7CNN9|RL17_STRP8 50S ribosomal protein L17 OS=Streptococcus ...    54   2e-07
sp|Q5XEA8|RL17_STRP6 50S ribosomal protein L17 OS=Streptococcus ...    54   2e-07

>sp|O80363|RK17_TOBAC 50S ribosomal protein L17, chloroplastic
           OS=Nicotiana tabacum GN=RPL17 PE=2 SV=1
          Length = 205

 Score = 69.3 bits (168), Expect = 6e-12
 Identities = 30/33 (90%), Positives = 33/33 (100%)
 Frame = +3

Query: 3   PDRYGERNGGYTRIIRTMPRKGDNAPMAFIELV 101
           PDRYGERNGGYTRIIRT+PR+GDNAPMA+IELV
Sbjct: 173 PDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 205


>sp|Q9M385|RK17_ARATH 50S ribosomal protein L17, chloroplastic
           OS=Arabidopsis thaliana GN=RPL17 PE=2 SV=1
          Length = 211

 Score = 69.3 bits (168), Expect = 6e-12
 Identities = 30/33 (90%), Positives = 33/33 (100%)
 Frame = +3

Query: 3   PDRYGERNGGYTRIIRTMPRKGDNAPMAFIELV 101
           PDRYGERNGGYTRIIRT+PR+GDNAPMA+IELV
Sbjct: 179 PDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 211


>sp|A5GVY4|RL17_SYNR3 50S ribosomal protein L17 OS=Synechococcus sp.
           (strain RCC307) GN=rplQ PE=3 SV=1
          Length = 116

 Score = 59.3 bits (142), Expect = 6e-09
 Identities = 26/32 (81%), Positives = 30/32 (93%)
 Frame = +3

Query: 6   DRYGERNGGYTRIIRTMPRKGDNAPMAFIELV 101
           +RYG+RNGGYTRIIRT+PR+GDNA MA IELV
Sbjct: 85  ERYGDRNGGYTRIIRTVPRRGDNAEMAIIELV 116


>sp|Q0ID29|RL17_SYNS3 50S ribosomal protein L17 OS=Synechococcus sp.
           (strain CC9311) GN=rplQ PE=3 SV=1
          Length = 116

 Score = 58.9 bits (141), Expect = 8e-09
 Identities = 26/33 (78%), Positives = 29/33 (87%)
 Frame = +3

Query: 3   PDRYGERNGGYTRIIRTMPRKGDNAPMAFIELV 101
           P RYG+RNGGYTRI RT+PR+GDNA MA IELV
Sbjct: 84  PTRYGDRNGGYTRITRTVPRRGDNAEMAIIELV 116


>sp|Q7V522|RL17_PROMM 50S ribosomal protein L17 OS=Prochlorococcus
           marinus (strain MIT 9313) GN=rplQ PE=3 SV=1
          Length = 116

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 26/32 (81%), Positives = 29/32 (90%)
 Frame = +3

Query: 6   DRYGERNGGYTRIIRTMPRKGDNAPMAFIELV 101
           DRYG+R GGYTRIIRT+PR+GDNA MA IELV
Sbjct: 85  DRYGDRQGGYTRIIRTVPRRGDNAEMAIIELV 116


>sp|A2CC52|RL17_PROM3 50S ribosomal protein L17 OS=Prochlorococcus
           marinus (strain MIT 9303) GN=rplQ PE=3 SV=1
          Length = 116

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 26/32 (81%), Positives = 29/32 (90%)
 Frame = +3

Query: 6   DRYGERNGGYTRIIRTMPRKGDNAPMAFIELV 101
           DRYG+R GGYTRIIRT+PR+GDNA MA IELV
Sbjct: 85  DRYGDRQGGYTRIIRTVPRRGDNAEMAIIELV 116


>sp|Q7UZW7|RL17_PROMP 50S ribosomal protein L17 OS=Prochlorococcus
           marinus subsp. pastoris (strain CCMP1378 / MED4) GN=rplQ
           PE=3 SV=1
          Length = 116

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 26/32 (81%), Positives = 29/32 (90%)
 Frame = +3

Query: 6   DRYGERNGGYTRIIRTMPRKGDNAPMAFIELV 101
           +RYGERNGGYTRI+RT+ RKGDNA MA IELV
Sbjct: 85  ERYGERNGGYTRIVRTVARKGDNAQMAIIELV 116


>sp|Q3AW69|RL17_SYNS9 50S ribosomal protein L17 OS=Synechococcus sp.
           (strain CC9902) GN=rplQ PE=3 SV=1
          Length = 116

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 26/33 (78%), Positives = 28/33 (84%)
 Frame = +3

Query: 3   PDRYGERNGGYTRIIRTMPRKGDNAPMAFIELV 101
           P RYGER GGYTRI RT+PR+GDNA MA IELV
Sbjct: 84  PTRYGERKGGYTRITRTVPRRGDNAEMAIIELV 116


>sp|Q7U4H6|RL17_SYNPX 50S ribosomal protein L17 OS=Synechococcus sp.
           (strain WH8102) GN=rplQ PE=3 SV=1
          Length = 116

 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 25/33 (75%), Positives = 28/33 (84%)
 Frame = +3

Query: 3   PDRYGERNGGYTRIIRTMPRKGDNAPMAFIELV 101
           PDRY +R GGYTRI RT+PR+GDNA MA IELV
Sbjct: 84  PDRYSDRKGGYTRITRTVPRRGDNAEMAIIELV 116


>sp|A2BYR2|RL17_PROM5 50S ribosomal protein L17 OS=Prochlorococcus
           marinus (strain MIT 9515) GN=rplQ PE=3 SV=1
          Length = 116

 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 25/32 (78%), Positives = 29/32 (90%)
 Frame = +3

Query: 6   DRYGERNGGYTRIIRTMPRKGDNAPMAFIELV 101
           +RYG+RNGGYTRI+RT+ RKGDNA MA IELV
Sbjct: 85  ERYGDRNGGYTRIVRTVARKGDNAQMAIIELV 116
tr_hit_id A9SG27
Definition tr|A9SG27|A9SG27_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 33
Score (bit) 71.2
E-value 2.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945887|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_M11, 5'
         (298 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SG27|A9SG27_PHYPA Predicted protein OS=Physcomitrella paten...    71   2e-11
tr|A9RZ43|A9RZ43_PHYPA Predicted protein OS=Physcomitrella paten...    71   2e-11
tr|A9PC28|A9PC28_POPTR Putative uncharacterized protein OS=Popul...    69   9e-11
tr|A9P8K2|A9P8K2_POPTR Putative uncharacterized protein OS=Popul...    69   9e-11
tr|A7QBZ8|A7QBZ8_VITVI Chromosome chr10 scaffold_76, whole genom...    68   2e-10
tr|Q3LVI3|Q3LVI3_TAROF TO73-3 (Fragment) OS=Taraxacum officinale...    68   3e-10
tr|A9P1T8|A9P1T8_PICSI Putative uncharacterized protein OS=Picea...    66   8e-10
tr|B7FGK1|B7FGK1_MEDTR Putative uncharacterized protein OS=Medic...    65   2e-09
tr|B8CAZ9|B8CAZ9_THAPS RK17, ribosomal protein 17 50S large ribo...    63   8e-09
tr|Q75GR6|Q75GR6_ORYSJ Os03g0815400 protein OS=Oryza sativa subs...    61   3e-08
tr|A2XNC1|A2XNC1_ORYSI Putative uncharacterized protein OS=Oryza...    61   3e-08
tr|A3YUJ5|A3YUJ5_9SYNE 50S ribosomal protein L17 OS=Synechococcu...    60   4e-08
tr|B4FZB4|B4FZB4_MAIZE 50S ribosomal protein L17 OS=Zea mays PE=...    60   7e-08
tr|B7FP95|B7FP95_PHATR Predicted protein OS=Phaeodactylum tricor...    59   2e-07
tr|A9BCM3|A9BCM3_PROM4 50S ribosomal protein L17 OS=Prochlorococ...    58   2e-07
tr|Q060U5|Q060U5_9SYNE 50S ribosomal protein L17 OS=Synechococcu...    58   3e-07
tr|Q05QD7|Q05QD7_9SYNE 50S ribosomal protein L17 OS=Synechococcu...    57   6e-07
tr|B1X4Y4|B1X4Y4_PAUCH 50S ribosomal protein L17 OS=Paulinella c...    57   6e-07
tr|B8HMS9|B8HMS9_9CHRO Ribosomal protein L17 OS=Cyanothece sp. P...    56   8e-07
tr|B5IPS7|B5IPS7_9CHRO Ribosomal protein L17 OS=Cyanobium sp. PC...    56   8e-07
tr|B2ITN0|B2ITN0_NOSP7 Ribosomal protein L17 OS=Nostoc punctifor...    56   1e-06
tr|B4VPN0|B4VPN0_9CYAN Ribosomal protein L17 OS=Microcoleus chth...    56   1e-06
tr|A8YCU4|A8YCU4_MICAE 50S ribosomal protein L17 OS=Microcystis ...    56   1e-06
tr|Q15GA8|Q15GA8_RHDSA Chloroplast 50S ribosomal protein 17 (Fra...    56   1e-06
tr|A3IQ29|A3IQ29_9CHRO 50S ribosomal protein L17 OS=Cyanothece s...    55   2e-06
tr|A0ZG50|A0ZG50_NODSP 50S ribosomal protein L17 OS=Nodularia sp...    55   2e-06
tr|Q5K251|Q5K251_GUITH 50S ribosomal protein L17 OS=Guillardia t...    55   2e-06
tr|B5XJ63|B5XJ63_STRPZ LSU ribosomal protein L17p OS=Streptococc...    54   3e-06
tr|B5E6I1|B5E6I1_STRP4 50S ribosomal protein L17 OS=Streptococcu...    54   3e-06
tr|B4U527|B4U527_STREM 50S ribosomal protein L17 OS=Streptococcu...    54   3e-06

>tr|A9SG27|A9SG27_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_129247 PE=3 SV=1
          Length = 129

 Score = 71.2 bits (173), Expect = 2e-11
 Identities = 32/33 (96%), Positives = 33/33 (100%)
 Frame = +3

Query: 3   PDRYGERNGGYTRIIRTMPRKGDNAPMAFIELV 101
           P+RYGERNGGYTRIIRTMPRKGDNAPMAFIELV
Sbjct: 97  PERYGERNGGYTRIIRTMPRKGDNAPMAFIELV 129


>tr|A9RZ43|A9RZ43_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_121675 PE=3 SV=1
          Length = 129

 Score = 71.2 bits (173), Expect = 2e-11
 Identities = 32/33 (96%), Positives = 33/33 (100%)
 Frame = +3

Query: 3   PDRYGERNGGYTRIIRTMPRKGDNAPMAFIELV 101
           P+RYGERNGGYTRIIRTMPRKGDNAPMAFIELV
Sbjct: 97  PERYGERNGGYTRIIRTMPRKGDNAPMAFIELV 129


>tr|A9PC28|A9PC28_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 224

 Score = 69.3 bits (168), Expect = 9e-11
 Identities = 30/33 (90%), Positives = 33/33 (100%)
 Frame = +3

Query: 3   PDRYGERNGGYTRIIRTMPRKGDNAPMAFIELV 101
           PDRYGERNGGYTRIIRT+PR+GDNAPMA+IELV
Sbjct: 192 PDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 224


>tr|A9P8K2|A9P8K2_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 227

 Score = 69.3 bits (168), Expect = 9e-11
 Identities = 30/33 (90%), Positives = 33/33 (100%)
 Frame = +3

Query: 3   PDRYGERNGGYTRIIRTMPRKGDNAPMAFIELV 101
           PDRYGERNGGYTRIIRT+PR+GDNAPMA+IELV
Sbjct: 195 PDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 227


>tr|A7QBZ8|A7QBZ8_VITVI Chromosome chr10 scaffold_76, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00035173001
           PE=3 SV=1
          Length = 116

 Score = 68.2 bits (165), Expect = 2e-10
 Identities = 29/33 (87%), Positives = 33/33 (100%)
 Frame = +3

Query: 3   PDRYGERNGGYTRIIRTMPRKGDNAPMAFIELV 101
           PDRYG+RNGGYTRIIRT+PR+GDNAPMA+IELV
Sbjct: 84  PDRYGDRNGGYTRIIRTLPRRGDNAPMAYIELV 116


>tr|Q3LVI3|Q3LVI3_TAROF TO73-3 (Fragment) OS=Taraxacum officinale
           GN=To73-3 PE=2 SV=1
          Length = 45

 Score = 67.8 bits (164), Expect = 3e-10
 Identities = 29/33 (87%), Positives = 33/33 (100%)
 Frame = +3

Query: 3   PDRYGERNGGYTRIIRTMPRKGDNAPMAFIELV 101
           P+RYGERNGGYTRIIRT+PR+GDNAPMA+IELV
Sbjct: 13  PERYGERNGGYTRIIRTLPRRGDNAPMAYIELV 45


>tr|A9P1T8|A9P1T8_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 207

 Score = 66.2 bits (160), Expect = 8e-10
 Identities = 29/32 (90%), Positives = 32/32 (100%)
 Frame = +3

Query: 6   DRYGERNGGYTRIIRTMPRKGDNAPMAFIELV 101
           +RYGERNGGYTRIIRT+PR+GDNAPMAFIELV
Sbjct: 176 ERYGERNGGYTRIIRTLPRRGDNAPMAFIELV 207


>tr|B7FGK1|B7FGK1_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 214

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 28/32 (87%), Positives = 32/32 (100%)
 Frame = +3

Query: 6   DRYGERNGGYTRIIRTMPRKGDNAPMAFIELV 101
           +RYGERNGGYTRIIRT+PR+GDNAPMA+IELV
Sbjct: 183 ERYGERNGGYTRIIRTLPRRGDNAPMAYIELV 214


>tr|B8CAZ9|B8CAZ9_THAPS RK17, ribosomal protein 17 50S large
           ribosomal subunit, chloroplast OS=Thalassiosira
           pseudonana CCMP1335 GN=RK17 PE=4 SV=1
          Length = 116

 Score = 62.8 bits (151), Expect = 8e-09
 Identities = 27/33 (81%), Positives = 31/33 (93%)
 Frame = +3

Query: 3   PDRYGERNGGYTRIIRTMPRKGDNAPMAFIELV 101
           P+RYGERNGGYTR++RTMPR+GDNA MA IELV
Sbjct: 84  PERYGERNGGYTRVLRTMPRQGDNAKMAVIELV 116


>tr|Q75GR6|Q75GR6_ORYSJ Os03g0815400 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0042K11.2 PE=2 SV=1
          Length = 210

 Score = 60.8 bits (146), Expect = 3e-08
 Identities = 27/32 (84%), Positives = 29/32 (90%)
 Frame = +3

Query: 6   DRYGERNGGYTRIIRTMPRKGDNAPMAFIELV 101
           DRYGER GGYTRII T PR+GDNAPMA+IELV
Sbjct: 179 DRYGEREGGYTRIIPTFPRRGDNAPMAYIELV 210