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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945901
Clone id YMU02A01NGRL0010_N06
Library
Length 483
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_N06. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
AACTGTGCTCCTCGCATTCACTAGCCATCTTCTGTGGAGAGGTCGACACTGAAAAGCTAT
GGCGACGATGTCTGCGTCTCTGGCCGTGAGCGCGCCGAGCTGCCCACCCTCACAGCAGAG
CCTCTCAGAAAAGAGCTTCTCGGGCCTGATGGCGACCACTCTATTCGCCCTCAGGTGCGG
CAATCCCCTCGCCCTCTCCTATGGCAGCCGCATCATCGCCATGCTGGAGTGGAAGCCGTA
CGACAACAAGAAGTTTGAGACTCTGTCATATCTGCCGCACCTGAGTACCGAGCATATCTC
AAAGCAGGTGGACTACATGGTGCGACAGAACTTTACCCCCTGCATCGAGTTCGACTACAT
TGGGAGCGTGTACCGGGAGCACTTCCACGGGAGCGGGTACGACGATCGGAGGTACTGGGT
GATGTGTAAGCTGCCCATGTTTGGCTGCACCGACTCTACCTCCGTTCTGCGAGAGATTAC
TGA
■■Homology search results ■■ -
sp_hit_id O64416
Definition sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea
Align length 141
Score (bit) 124.0
E-value 3.0e-28
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945901|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_N06, 5'
         (483 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai...   124   3e-28
sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai...   121   1e-27
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai...   121   2e-27
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...   119   6e-27
sp|P00871|RBS1_WHEAT Ribulose bisphosphate carboxylase small cha...   119   6e-27
sp|P26667|RBS2_WHEAT Ribulose bisphosphate carboxylase small cha...   119   7e-27
sp|Q02980|RBS_MALSP Ribulose bisphosphate carboxylase small chai...   119   9e-27
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha...   119   9e-27
sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai...   118   1e-26
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai...   118   2e-26
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch...   117   3e-26
sp|P05348|RBS_MAIZE Ribulose bisphosphate carboxylase small chai...   117   4e-26
sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha...   116   5e-26
sp|P07689|RBS3_PEA Ribulose bisphosphate carboxylase small chain...   116   5e-26
sp|Q41373|RBS_SACHY Ribulose bisphosphate carboxylase small chai...   116   6e-26
sp|Q40004|RBS_HORVU Ribulose bisphosphate carboxylase small chai...   116   6e-26
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai...   115   8e-26
sp|P00869|RBS2_PEA Ribulose bisphosphate carboxylase small chain...   115   8e-26
sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha...   115   8e-26
sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small cha...   115   8e-26
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch...   115   1e-25
sp|P08474|RBS_CUCSA Ribulose bisphosphate carboxylase small chai...   115   1e-25
sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small cha...   115   1e-25
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch...   115   1e-25
sp|P19309|RBS3_LEMGI Ribulose bisphosphate carboxylase small cha...   114   2e-25
sp|P27985|RBS2_BRANA Ribulose bisphosphate carboxylase small cha...   114   2e-25
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch...   114   2e-25
sp|P08135|RBS_RAPSA Ribulose bisphosphate carboxylase small chai...   114   3e-25
sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha...   114   3e-25
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai...   113   5e-25

>sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1
          Length = 180

 Score =  124 bits (310), Expect = 3e-28
 Identities = 68/141 (48%), Positives = 85/141 (60%)
 Frame = +2

Query: 56  AMATMSASLAVSAPSCPPSQQSLSEKSFSGLMATTLFALRCGNPLALSYGSRIIAMLEWK 235
           A A +    A SA S   S Q +S ++  GL A              + GSR+  M  W+
Sbjct: 6   ASAAVVTPFAASAASTTKSSQIVSVQA--GLKAGVFGGKSEWQTKTQTNGSRVSCMQVWE 63

Query: 236 PYDNKKFETLSYLPHLSTEHISKQVDYMVRQNFTPCIEFDYIGSVYREHFHGSGYDDRRY 415
           PY+N KFETLSYLP LS + ++KQ+DY+++  + PCIEFD  G+V RE     GY D RY
Sbjct: 64  PYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQGTVTREGSTMPGYYDGRY 123

Query: 416 WVMCKLPMFGCTDSTSVLREI 478
           W M KLPMFGCTDS SVLREI
Sbjct: 124 WTMWKLPMFGCTDSASVLREI 144


>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
          Length = 181

 Score =  121 bits (304), Expect = 1e-27
 Identities = 65/145 (44%), Positives = 89/145 (61%), Gaps = 5/145 (3%)
 Frame = +2

Query: 59  MATMSASLAVSAPSCPPSQQSLSEKSFSGLMATTLFAL--RCGNPLAL--SYGSRIIAML 226
           MA++S+S   +      +Q SL+   F+GL +   F +  +  N  +   S G R+  M 
Sbjct: 1   MASISSSAIATVNRTTSTQASLAAP-FTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMK 59

Query: 227 EWKPYDNKKFETLSYLPHLSTEHISKQVDYMVRQNFTPCIEFDY-IGSVYREHFHGSGYD 403
            W P   KK+ETLSYLP LS E +SK++DY++R  + PC+EF+   G VYREH H  GY 
Sbjct: 60  VWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYY 119

Query: 404 DRRYWVMCKLPMFGCTDSTSVLREI 478
           D RYW M KLPMFGCTDS  V++E+
Sbjct: 120 DGRYWTMWKLPMFGCTDSAQVMKEV 144


>sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1
          Length = 183

 Score =  121 bits (303), Expect = 2e-27
 Identities = 64/140 (45%), Positives = 89/140 (63%), Gaps = 4/140 (2%)
 Frame = +2

Query: 71  SASLAVSAPSCPPSQQSLSEKSFSGLMATTLFAL-RCGNPLA--LSYGSRIIAMLEWKPY 241
           S ++A  +   P   Q+     F+GL +++ F + R  N +    S G R+  M  W P 
Sbjct: 8   SGTVATVSADRPAPAQARMVAPFNGLKSSSAFPVTRKSNDITSIASNGGRVQCMQVWPPL 67

Query: 242 DNKKFETLSYLPHLSTEHISKQVDYMVRQNFTPCIEFDY-IGSVYREHFHGSGYDDRRYW 418
             KKFETLSYLP LS+E ++K+VDY++R+N+ PC+EF+   G VYRE+    GY D RYW
Sbjct: 68  GLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYW 127

Query: 419 VMCKLPMFGCTDSTSVLREI 478
            M KLPMFGCTDS+ VL+E+
Sbjct: 128 TMWKLPMFGCTDSSQVLKEL 147


>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
          Length = 182

 Score =  119 bits (299), Expect = 6e-27
 Identities = 66/143 (46%), Positives = 88/143 (61%), Gaps = 5/143 (3%)
 Frame = +2

Query: 65  TMSASLAVSAPSCPPSQQSLSEKSFSGLMATTLFAL--RCGNPLA--LSYGSRIIAMLEW 232
           +M +S  V+A S     QS     F+ L +T+ F +  +  N +    S G R+  M  W
Sbjct: 4   SMISSATVAAVSRASPAQSSMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVW 63

Query: 233 KPYDNKKFETLSYLPHLSTEHISKQVDYMVRQNFTPCIEFDY-IGSVYREHFHGSGYDDR 409
            P   KKFETLSYLP LS+E ++K+VDY++R+N  PC+EF+   G VYREH    GY D 
Sbjct: 64  PPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDG 123

Query: 410 RYWVMCKLPMFGCTDSTSVLREI 478
           RYW M KLPMFGC DS+ VL+E+
Sbjct: 124 RYWTMWKLPMFGCNDSSQVLKEL 146


>sp|P00871|RBS1_WHEAT Ribulose bisphosphate carboxylase small chain
           PWS4.3, chloroplastic OS=Triticum aestivum PE=3 SV=2
          Length = 174

 Score =  119 bits (299), Expect = 6e-27
 Identities = 67/135 (49%), Positives = 82/135 (60%)
 Frame = +2

Query: 74  ASLAVSAPSCPPSQQSLSEKSFSGLMATTLFALRCGNPLALSYGSRIIAMLEWKPYDNKK 253
           A +A SA +  P Q     KS +GL  +       G+   +S G RI  M  W     KK
Sbjct: 4   AVMASSATTVAPFQ---GLKSTAGLPVSRRSRGSLGS---VSNGGRIRCMQVWPIEGIKK 57

Query: 254 FETLSYLPHLSTEHISKQVDYMVRQNFTPCIEFDYIGSVYREHFHGSGYDDRRYWVMCKL 433
           FETLSYLP LSTE +SKQVDY++R  + PC+EF  +G V+REH    GY D RYW M KL
Sbjct: 58  FETLSYLPPLSTEALSKQVDYLIRSKWVPCLEFSKVGFVFREHNSSPGYYDGRYWTMWKL 117

Query: 434 PMFGCTDSTSVLREI 478
           PMFGCTD+T VL E+
Sbjct: 118 PMFGCTDATQVLNEV 132


>sp|P26667|RBS2_WHEAT Ribulose bisphosphate carboxylase small chain
           PW9, chloroplastic OS=Triticum aestivum PE=3 SV=1
          Length = 175

 Score =  119 bits (298), Expect = 7e-27
 Identities = 66/145 (45%), Positives = 82/145 (56%), Gaps = 4/145 (2%)
 Frame = +2

Query: 56  AMATMSASLAVSAPSCPPSQQSLSEKSFSGLMATTLFALRCGNPL----ALSYGSRIIAM 223
           A A M++S    AP             F GL +T    + C +      ++S G RI  M
Sbjct: 2   APAVMASSATTVAP-------------FQGLKSTAGLPISCRSGSTGLSSVSNGGRIRCM 48

Query: 224 LEWKPYDNKKFETLSYLPHLSTEHISKQVDYMVRQNFTPCIEFDYIGSVYREHFHGSGYD 403
             W     KKFETLSYLP LSTE + KQVDY++R  + PC+EF  +G V+REH    GY 
Sbjct: 49  QVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFSKVGFVFREHNSSPGYY 108

Query: 404 DRRYWVMCKLPMFGCTDSTSVLREI 478
           D RYW M KLPMFGCTD+T VL E+
Sbjct: 109 DGRYWTMWKLPMFGCTDATQVLNEV 133


>sp|Q02980|RBS_MALSP Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1
          Length = 183

 Score =  119 bits (297), Expect = 9e-27
 Identities = 64/140 (45%), Positives = 88/140 (62%), Gaps = 4/140 (2%)
 Frame = +2

Query: 71  SASLAVSAPSCPPSQQSLSEKSFSGLMATTLFAL-RCGNPLA--LSYGSRIIAMLEWKPY 241
           S ++A  +   P   Q+     F+GL +++   + R  N +    S G R+  M  W P 
Sbjct: 8   SGTVATVSADRPAPAQARMVAPFTGLKSSSASPVTRKSNDITSIASNGGRVQCMQVWPPL 67

Query: 242 DNKKFETLSYLPHLSTEHISKQVDYMVRQNFTPCIEFDY-IGSVYREHFHGSGYDDRRYW 418
             KKFETLSYLP LSTE ++K+VDY++R+N+ PC+EF+   G VYRE+    GY D RYW
Sbjct: 68  GLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDGRYW 127

Query: 419 VMCKLPMFGCTDSTSVLREI 478
            M KLPMFGCTDS+ VL+E+
Sbjct: 128 TMWKLPMFGCTDSSQVLKEL 147


>sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1
          Length = 177

 Score =  119 bits (297), Expect = 9e-27
 Identities = 66/143 (46%), Positives = 87/143 (60%), Gaps = 4/143 (2%)
 Frame = +2

Query: 62  ATMSASLAVSAPSCPPSQQSLSEKSFSGLMATTLFAL--RCGNPLAL--SYGSRIIAMLE 229
           ++M AS A  A + P   QS     F+GL ++  F    +  N L+   S G R+  M  
Sbjct: 3   SSMMASTAAVARAGPA--QSSMVAPFNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQV 60

Query: 230 WKPYDNKKFETLSYLPHLSTEHISKQVDYMVRQNFTPCIEFDYIGSVYREHFHGSGYDDR 409
           W P   KKFETLSYLP LS E ++K+VDY++R ++ PCIEF   G VYRE+    GY D 
Sbjct: 61  WPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDG 120

Query: 410 RYWVMCKLPMFGCTDSTSVLREI 478
           RYW M KLPMFGCTD++ V+ E+
Sbjct: 121 RYWTMWKLPMFGCTDASQVIAEV 143


>sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1
          Length = 187

 Score =  118 bits (296), Expect = 1e-26
 Identities = 64/145 (44%), Positives = 87/145 (60%), Gaps = 5/145 (3%)
 Frame = +2

Query: 59  MATMSASLAVSAPSCPPSQQSLSEKSFSGLMATTLFALRCGNPLAL----SYGSRIIAML 226
           MA+   S A  A     +Q S+   SF+GL +   F +     L +    S G R+  ML
Sbjct: 1   MASSVMSTATVATGANAAQASMIA-SFNGLKSAASFPVTRKQDLDITSIASNGGRVECML 59

Query: 227 EWKPYDNKKFETLSYLPHLSTEHISKQVDYMVRQNFTPCIEFD-YIGSVYREHFHGSGYD 403
            W P + KK+ETLSYLP LS E + K+++Y++++ + PC+EF+   G VYREH    GY 
Sbjct: 60  VWPPINKKKYETLSYLPDLSDEQLLKEIEYLLQKGWVPCLEFETEHGFVYREHHRSPGYY 119

Query: 404 DRRYWVMCKLPMFGCTDSTSVLREI 478
           D RYW M KLPMFGCTD+T VL E+
Sbjct: 120 DGRYWTMWKLPMFGCTDATQVLNEV 144


>sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2
           SV=1
          Length = 178

 Score =  118 bits (295), Expect = 2e-26
 Identities = 64/144 (44%), Positives = 89/144 (61%), Gaps = 3/144 (2%)
 Frame = +2

Query: 56  AMATMSASLAVSAPSCPPSQQSLSEKSFSGLMATTLFALR---CGNPLALSYGSRIIAML 226
           A + M ++ AVS  S  P+Q ++    F+GL ++  F +      +    S G R+  M 
Sbjct: 2   ASSMMVSTAAVSRTS--PAQSNMVVP-FAGLHSSAAFPVTRKFADSSKLPSNGLRVRCMQ 58

Query: 227 EWKPYDNKKFETLSYLPHLSTEHISKQVDYMVRQNFTPCIEFDYIGSVYREHFHGSGYDD 406
            W P   KKFETLSYLP L+ E + ++VDY++R  + PCIEF  +G VYRE+ +  GY D
Sbjct: 59  VWPPEGKKKFETLSYLPPLTREQLGQEVDYLIRNGWIPCIEFCKVGFVYREYHNSPGYYD 118

Query: 407 RRYWVMCKLPMFGCTDSTSVLREI 478
            RYW M KLPMFGCTDS+ VL+E+
Sbjct: 119 GRYWTMWKLPMFGCTDSSQVLKEV 142
tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 140
Score (bit) 214.0
E-value 1.0e-54
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945901|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_N06, 5'
         (483 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...   214   1e-54
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c...   145   1e-33
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c...   142   6e-33
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...   142   1e-32
tr|A9U380|A9U380_PHYPA Ribulose bisphosphate carboxylase small c...   142   1e-32
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c...   142   1e-32
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c...   142   1e-32
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c...   140   3e-32
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c...   128   2e-28
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c...   126   6e-28
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c...   126   6e-28
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c...   125   8e-28
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c...   125   1e-27
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c...   124   2e-27
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c...   124   2e-27
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c...   124   2e-27
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c...   123   4e-27
tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c...   122   7e-27
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c...   122   9e-27
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c...   122   1e-26
tr|A9S8M9|A9S8M9_PHYPA Ribulose bisphosphate carboxylase small c...   122   1e-26
tr|A9PI67|A9PI67_POPTR Ribulose bisphosphate carboxylase small c...   121   1e-26
tr|A9NNZ8|A9NNZ8_PICSI Ribulose bisphosphate carboxylase small c...   121   2e-26
tr|A9S8M6|A9S8M6_PHYPA Ribulose bisphosphate carboxylase small c...   120   3e-26
tr|Q43115|Q43115_9ROSA Ribulose bisphosphate carboxylase small c...   120   3e-26
tr|A9RG04|A9RG04_PHYPA Ribulose bisphosphate carboxylase small c...   120   4e-26
tr|A9NML5|A9NML5_PICSI Ribulose bisphosphate carboxylase small c...   120   4e-26
tr|A9NMJ1|A9NMJ1_PICSI Ribulose bisphosphate carboxylase small c...   120   4e-26
tr|Q9ZWG3|Q9ZWG3_9POAL Ribulose bisphosphate carboxylase small c...   119   6e-26
tr|Q9FEE4|Q9FEE4_WHEAT Ribulose bisphosphate carboxylase small c...   119   6e-26

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score =  214 bits (546), Expect = 1e-54
 Identities = 106/140 (75%), Positives = 119/140 (85%)
 Frame = +2

Query: 59  MATMSASLAVSAPSCPPSQQSLSEKSFSGLMATTLFALRCGNPLALSYGSRIIAMLEWKP 238
           MATM A++AVSAPSC  + +SLS KSFSGL A TLFA +C NPLA+S GSRI AML WKP
Sbjct: 1   MATMLAAMAVSAPSCAAAAESLS-KSFSGLKANTLFAPKCANPLAISNGSRISAMLVWKP 59

Query: 239 YDNKKFETLSYLPHLSTEHISKQVDYMVRQNFTPCIEFDYIGSVYREHFHGSGYDDRRYW 418
           YDNKKFETLSYLP L+ + I+KQV+YMVR+ +TPCIEFD IGSVYREHFHGSGY D RYW
Sbjct: 60  YDNKKFETLSYLPPLTNDQIAKQVEYMVRKGWTPCIEFDTIGSVYREHFHGSGYYDGRYW 119

Query: 419 VMCKLPMFGCTDSTSVLREI 478
           +M KLPMFGCTDS SVLREI
Sbjct: 120 IMWKLPMFGCTDSGSVLREI 139


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87740 PE=3 SV=1
          Length = 179

 Score =  145 bits (365), Expect = 1e-33
 Identities = 75/144 (52%), Positives = 93/144 (64%), Gaps = 3/144 (2%)
 Frame = +2

Query: 56  AMATMSASLAVSAPSCPPSQQSLSEKSFSGLMATTLFALRCGNPLALSYGSRIIAMLEWK 235
           A A +S S+  +A      ++S S K FSGL +TTLFA +     ++  GSR+  M  W 
Sbjct: 2   ASAVVSVSIVAAASPAAVCRESSSVKQFSGLKSTTLFASKARRLSSVHNGSRVQCMQVWN 61

Query: 236 PYDNKKFETLSYLPHLSTEHISKQVDYMVRQNFTPCIEFDYIGSVYREHFHG---SGYDD 406
           P    KFET SYLP L+ + I+KQVD+M++QN  PCIEFD +GSV R +F G   SGY D
Sbjct: 62  PIGQPKFETFSYLPPLTDDQIAKQVDFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYD 121

Query: 407 RRYWVMCKLPMFGCTDSTSVLREI 478
            RYW M KLPMFGCTDS  VLREI
Sbjct: 122 GRYWTMWKLPMFGCTDSAQVLREI 145


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_221004 PE=3 SV=1
          Length = 184

 Score =  142 bits (359), Expect = 6e-33
 Identities = 74/137 (54%), Positives = 90/137 (65%), Gaps = 3/137 (2%)
 Frame = +2

Query: 77  SLAVSAPSCPPSQQSLSEKSFSGLMATTLFALRCGNPLALSYGSRIIAMLEWKPYDNKKF 256
           SL  +A S   S +S + K+FSGL   TLF+ +     A+  GSR+  M  W P    KF
Sbjct: 14  SLGAAASSVAASNESATVKAFSGLKPATLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKF 73

Query: 257 ETLSYLPHLSTEHISKQVDYMVRQNFTPCIEFDYIGSVYREHFHG---SGYDDRRYWVMC 427
           ET SYLP L+ + I+KQVDYM++QN  PCIEFD +GSV R +F G   SGY D RYW M 
Sbjct: 74  ETFSYLPPLTDDQIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMW 133

Query: 428 KLPMFGCTDSTSVLREI 478
           KLPMFGCTDS+ VLREI
Sbjct: 134 KLPMFGCTDSSQVLREI 150


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
           PE=2 SV=1
          Length = 184

 Score =  142 bits (357), Expect = 1e-32
 Identities = 72/137 (52%), Positives = 92/137 (67%), Gaps = 3/137 (2%)
 Frame = +2

Query: 77  SLAVSAPSCPPSQQSLSEKSFSGLMATTLFALRCGNPLALSYGSRIIAMLEWKPYDNKKF 256
           S+ V++ S   S++S S K+FSGL + TLF  +     ++  GSR+  M  W P    KF
Sbjct: 14  SVTVASSSVAASRESSSVKAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKF 73

Query: 257 ETLSYLPHLSTEHISKQVDYMVRQNFTPCIEFDYIGSVYREHFHG---SGYDDRRYWVMC 427
           ET SYLP LS + I++QVDYM++QN  PCIEFD +G+V R +F G   SGY D RYW M 
Sbjct: 74  ETFSYLPPLSDDQIARQVDYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMW 133

Query: 428 KLPMFGCTDSTSVLREI 478
           KLPMFGCTDS+ VLREI
Sbjct: 134 KLPMFGCTDSSQVLREI 150


>tr|A9U380|A9U380_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_8310 PE=3 SV=1
          Length = 156

 Score =  142 bits (357), Expect = 1e-32
 Identities = 72/137 (52%), Positives = 92/137 (67%), Gaps = 3/137 (2%)
 Frame = +2

Query: 77  SLAVSAPSCPPSQQSLSEKSFSGLMATTLFALRCGNPLALSYGSRIIAMLEWKPYDNKKF 256
           S+ V++ S   S++S S K+FSGL + TLF  +     ++  GSR+  M  W P    KF
Sbjct: 18  SVTVASSSVAASRESSSVKAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKF 77

Query: 257 ETLSYLPHLSTEHISKQVDYMVRQNFTPCIEFDYIGSVYREHFHG---SGYDDRRYWVMC 427
           ET SYLP LS + I++QVDYM++QN  PCIEFD +G+V R +F G   SGY D RYW M 
Sbjct: 78  ETFSYLPPLSDDQIARQVDYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMW 137

Query: 428 KLPMFGCTDSTSVLREI 478
           KLPMFGCTDS+ VLREI
Sbjct: 138 KLPMFGCTDSSQVLREI 154


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_225236 PE=3 SV=1
          Length = 183

 Score =  142 bits (357), Expect = 1e-32
 Identities = 74/137 (54%), Positives = 93/137 (67%), Gaps = 3/137 (2%)
 Frame = +2

Query: 77  SLAVSAPSCPPSQQSLSEKSFSGLMATTLFALRCGNPLALSYGSRIIAMLEWKPYDNKKF 256
           SLA ++P+   S+ S S K+FSGL + TLF+ +     ++  GSR+  M  W P    KF
Sbjct: 14  SLAAASPAAV-SRDSTSVKAFSGLKSATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPKF 72

Query: 257 ETLSYLPHLSTEHISKQVDYMVRQNFTPCIEFDYIGSVYREHFHG---SGYDDRRYWVMC 427
           ET SYLP L+ + I+KQVDYM++QN  PCIEFD +GSV R +F G   SGY D RYW M 
Sbjct: 73  ETFSYLPPLTDDEIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMW 132

Query: 428 KLPMFGCTDSTSVLREI 478
           KLPMFGCTDS+ VLREI
Sbjct: 133 KLPMFGCTDSSQVLREI 149


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87752 PE=3 SV=1
          Length = 179

 Score =  142 bits (357), Expect = 1e-32
 Identities = 74/144 (51%), Positives = 92/144 (63%), Gaps = 3/144 (2%)
 Frame = +2

Query: 56  AMATMSASLAVSAPSCPPSQQSLSEKSFSGLMATTLFALRCGNPLALSYGSRIIAMLEWK 235
           A A +S S+  +A      ++S S K FSGL +TTL A +     ++  GSR+  M  W 
Sbjct: 2   ASAVVSVSIVAAASPASVCRESSSVKQFSGLKSTTLSASKARRLSSVHNGSRVQCMQVWN 61

Query: 236 PYDNKKFETLSYLPHLSTEHISKQVDYMVRQNFTPCIEFDYIGSVYREHFHG---SGYDD 406
           P    KFET SYLP L+ + I+KQVD+M++QN  PCIEFD +GSV R +F G   SGY D
Sbjct: 62  PIGQPKFETFSYLPPLTDDQIAKQVDFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYD 121

Query: 407 RRYWVMCKLPMFGCTDSTSVLREI 478
            RYW M KLPMFGCTDS  VLREI
Sbjct: 122 GRYWTMWKLPMFGCTDSAQVLREI 145


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
          Length = 214

 Score =  140 bits (353), Expect = 3e-32
 Identities = 76/143 (53%), Positives = 93/143 (65%), Gaps = 3/143 (2%)
 Frame = +2

Query: 59  MATMSASLAVSAPSCPPSQQSLSEKSFSGLMATTLFALRCGNPLALSYGSRIIAMLEWKP 238
           +A   AS  V APS     +S S K+FSGL + TLF+ +     ++  GSR+  M  W P
Sbjct: 43  VALGGASSCVGAPS-----ESSSVKAFSGLKSATLFSGKTQKLSSVQNGSRVQCMQVWNP 97

Query: 239 YDNKKFETLSYLPHLSTEHISKQVDYMVRQNFTPCIEFDYIGSVYREHFHG---SGYDDR 409
               KFET SYLP L+ + I+KQVDYM++QN  PCIEFD +GSV R +F G   SGY D 
Sbjct: 98  IGQPKFETFSYLPPLTDDQIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDG 157

Query: 410 RYWVMCKLPMFGCTDSTSVLREI 478
           RYW M KLPMFGCTDS+ VLREI
Sbjct: 158 RYWTMWKLPMFGCTDSSQVLREI 180


>tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_152025 PE=3 SV=1
          Length = 183

 Score =  128 bits (321), Expect = 2e-28
 Identities = 69/148 (46%), Positives = 88/148 (59%), Gaps = 7/148 (4%)
 Frame = +2

Query: 56  AMATMSASLAVSAP-------SCPPSQQSLSEKSFSGLMATTLFALRCGNPLALSYGSRI 214
           AMA++ A+  V AP       S   + +S S K+FSGL + TLF+ +     ++  GSR+
Sbjct: 2   AMASIVAATTVVAPTAFAAASSAVSTSESSSVKAFSGLKSNTLFSSKAQTLSSVQNGSRV 61

Query: 215 IAMLEWKPYDNKKFETLSYLPHLSTEHISKQVDYMVRQNFTPCIEFDYIGSVYREHFHGS 394
             M  W P    KFET SYLP LS + I+KQV+YM++Q   PC+EFD    V R +    
Sbjct: 62  QCMQVWNPIGMTKFETFSYLPPLSDDAIAKQVEYMIQQKLIPCLEFDNANGVSRTNNSSP 121

Query: 395 GYDDRRYWVMCKLPMFGCTDSTSVLREI 478
           GY D RYW M KLPMFGC DS  VLREI
Sbjct: 122 GYYDGRYWTMWKLPMFGCNDSAQVLREI 149


>tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_146969 PE=3 SV=1
          Length = 181

 Score =  126 bits (316), Expect = 6e-28
 Identities = 68/147 (46%), Positives = 88/147 (59%), Gaps = 7/147 (4%)
 Frame = +2

Query: 59  MATMSASLAVSAP-------SCPPSQQSLSEKSFSGLMATTLFALRCGNPLALSYGSRII 217
           MA++ A+  V AP       S   + +S S K+FSGL ++TLF+ +  +  ++  GSR+ 
Sbjct: 1   MASVVATSTVVAPAAFAASSSAVSTSESTSVKAFSGLKSSTLFSSKAQSLSSVQNGSRVQ 60

Query: 218 AMLEWKPYDNKKFETLSYLPHLSTEHISKQVDYMVRQNFTPCIEFDYIGSVYREHFHGSG 397
            M  W P    KFET SYLP LS + I+KQVDYM++Q   PC+EFD    V R +    G
Sbjct: 61  CMQVWNPIGMTKFETFSYLPPLSDDAIAKQVDYMIQQKLIPCLEFDNADGVSRTNNSSPG 120

Query: 398 YDDRRYWVMCKLPMFGCTDSTSVLREI 478
           Y D RYW M KLPMFGC D   VLREI
Sbjct: 121 YYDGRYWTMWKLPMFGCQDPAQVLREI 147