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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945912
Clone id YMU02A01NGRL0010_N23
Library
Length 340
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_N23. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GTTCACAGAACTCCCTCACGTTCCTTTGCTTCGAAACGAGGGTAGGCACACCAGACACAA
AATTGAGTGATGCGTAATACGGACGGAGGTTCGAATCCTCGCAAGGCGTCCGGAACAAAA
GTCGTCTTGCATTTCCGGAATAAGTCTCCCGACCCCTTGCTTTCCACCAAGAGAAAGCAA
AAAGAACCCGGGCGGGAAAGTTTGATTTGGTCAATCTCCTTGCCCCTCCGAACTAAGTGG
CGACGAAACCGATCTTCGTATCGAGATGCGGGTGGGTCCTGTTGCTTCGGTGTCCCCCGA
AGCTAAATCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q6NRW0
Definition sp|Q6NRW0|MTBP_XENLA Mdm2-binding protein OS=Xenopus laevis
Align length 75
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945912|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_N23, 5'
         (310 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6NRW0|MTBP_XENLA Mdm2-binding protein OS=Xenopus laevis GN=m...    31   1.7  
sp|A1DNV8|YD156_NEOFI WD repeat-containing protein NFIA_058290 O...    30   2.9  
sp|Q0P4G8|MTBP_XENTR Mdm2-binding protein OS=Xenopus tropicalis ...    30   2.9  
sp|Q6PJG2|CN043_HUMAN Uncharacterized protein C14orf43 OS=Homo s...    30   3.7  
sp|Q6A7M3|Y1495_PROAC UPF0090 protein PPA1495 OS=Propionibacteri...    30   4.9  
sp|Q7TQN7|GP135_RAT Probable G-protein coupled receptor 135 OS=R...    30   4.9  
sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic ...    29   6.4  
sp|O05528|FLII_CAUCR Flagellum-specific ATP synthase OS=Caulobac...    29   6.4  

>sp|Q6NRW0|MTBP_XENLA Mdm2-binding protein OS=Xenopus laevis GN=mtbp
           PE=2 SV=1
          Length = 860

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
 Frame = -3

Query: 278 DPPA-SRYEDRFRRHLVRRGKEIDQIKLSRPGSFC--FLLVESKGSGDLFRKCKTTFVPD 108
           +PPA  R   ++R ++ R+ K+I    +   G +C  + L++ KGSG     CK T +  
Sbjct: 335 NPPALQRSSKKWREYMSRKPKDIKVPGVELKGEYCSYYFLIQGKGSG----LCKATLLHS 390

Query: 107 ALRGFEPPSVLRITQ 63
           A +     S+L + Q
Sbjct: 391 ASQISGAASLLLLHQ 405


>sp|A1DNV8|YD156_NEOFI WD repeat-containing protein NFIA_058290
           OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
           NRRL 181) GN=NFIA_058290 PE=3 SV=1
          Length = 527

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = +2

Query: 161 FPPRESKKNPGGKV*FGQSPCPSELSGDETDL---RIEMRVGPVASVSPEAK 307
           FPP+ ++ +PGG     + P P ++  ++ DL   R+  R+  +A+ S  AK
Sbjct: 38  FPPKSARSSPGGLTKPKKKPAPKKVKKEDEDLVPRRMSSRLRGLAADSEVAK 89


>sp|Q0P4G8|MTBP_XENTR Mdm2-binding protein OS=Xenopus tropicalis
           GN=mtbp PE=2 SV=2
          Length = 867

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = -3

Query: 278 DPPA-SRYEDRFRRHLVRRGKEIDQIKLSRPGSFC--FLLVESKGSGDLFRKCKTTFVPD 108
           +PPA  R   ++R ++ R+ K+I    +   G +C  + L++ KGSG     CK T +  
Sbjct: 339 NPPALQRSSKKWREYMSRKPKDIKVPGVELKGEYCSYYFLIQGKGSG----FCKATLLHS 394

Query: 107 A 105
           A
Sbjct: 395 A 395


>sp|Q6PJG2|CN043_HUMAN Uncharacterized protein C14orf43 OS=Homo
           sapiens GN=C14orf43 PE=1 SV=2
          Length = 1045

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = +1

Query: 73  RNTDGGSNPRK---ASGTKVVLHFRNKSPDPLLSTKRKQKEPGRESLIWSISLPLRT 234
           ++  G    RK   AS TK  + F     +P L+TKR +++ G   LI  +S+P+RT
Sbjct: 483 KDGSGSEEKRKSVLASTTKCGVEFS----EPSLATKRAREDSGMVPLIIPVSVPVRT 535


>sp|Q6A7M3|Y1495_PROAC UPF0090 protein PPA1495 OS=Propionibacterium
           acnes GN=PPA1495 PE=3 SV=1
          Length = 178

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +2

Query: 131 ISGISLPTPCFPPRESKKNPGGKV*FGQSPCPSELSGDETDLRIEMRVGPVASVSPEAKS 310
           +S   + TP   PR  ++N G  V F  +P   + SG+  D RI      V ++  EA++
Sbjct: 80  VSSRGVSTPLTQPRHYRRNIGHLVRFTLNPAEEQKSGETFDGRIAEAGEEVVTLEVEAEN 139


>sp|Q7TQN7|GP135_RAT Probable G-protein coupled receptor 135
           OS=Rattus norvegicus GN=Gpr135 PE=2 SV=1
          Length = 457

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 9/48 (18%)
 Frame = +1

Query: 91  SNPRKASGTKVV---------LHFRNKSPDPLLSTKRKQKEPGRESLI 207
           SNP   SG +VV         L FR   PDP+++  ++ K   R+S I
Sbjct: 410 SNPASGSGGEVVMWARKNPVVLFFREDPPDPVMAVYKQHKSETRDSSI 457


>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and
           nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2
          Length = 732

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = -2

Query: 225 GQGD*PNQTFPPGFFLLSLGGKQGV----GRLIPEMQDDFCSGR 106
           G+G  PNQ  PP F  L +G  QG     G   P +Q  F  GR
Sbjct: 538 GRGVGPNQQIPPNFQGLPMGAMQGPGIPNGMGYPMVQGQFGGGR 581


>sp|O05528|FLII_CAUCR Flagellum-specific ATP synthase OS=Caulobacter
           crescentus GN=fliI PE=3 SV=2
          Length = 444

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 206 FGQSPCPSELSGDETDLRIEMRVGPVASVSPEAK 307
           FGQ P P+E+ G      + M  GPV  V P A+
Sbjct: 48  FGQKPLPAEVVGFRETRALLMPFGPVEGVGPGAE 81
tr_hit_id Q7UIE7
Definition tr|Q7UIE7|Q7UIE7_RHOBA Putative uncharacterized protein OS=Rhodopirellula baltica
Align length 41
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945912|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_N23, 5'
         (310 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7UIE7|Q7UIE7_RHOBA Putative uncharacterized protein OS=Rhodo...    35   1.4  
tr|B8HLS9|B8HLS9_9CHRO Metallophosphoesterase OS=Cyanothece sp. ...    35   1.4  
tr|B6KNM5|B6KNM5_TOXGO Putative uncharacterized protein OS=Toxop...    35   2.5  
tr|Q07YM3|Q07YM3_SHEFN ATP synthase A chain OS=Shewanella frigid...    34   4.2  
tr|Q851X6|Q851X6_ORYSJ Putative uncharacterized protein OSJNBa00...    33   7.2  
tr|Q10AH3|Q10AH3_ORYSJ Os03g0852300 protein OS=Oryza sativa subs...    33   7.2  
tr|A3APU5|A3APU5_ORYSJ Putative uncharacterized protein OS=Oryza...    33   7.2  
tr|A7F0J5|A7F0J5_SCLS1 Putative uncharacterized protein OS=Scler...    33   9.3  

>tr|Q7UIE7|Q7UIE7_RHOBA Putative uncharacterized protein
           OS=Rhodopirellula baltica GN=RB12581 PE=4 SV=1
          Length = 174

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 127 LHFRNKSPDPLLSTKRKQKEPGRESLIWSISLPLRTKWRRN 249
           L  RN+SP+PLL T  + K   R  + W+    +R  WR +
Sbjct: 133 LDARNRSPNPLLKTSWRMKANSRSRITWTPKTKIRDGWRNS 173


>tr|B8HLS9|B8HLS9_9CHRO Metallophosphoesterase OS=Cyanothece sp. PCC
           7425 GN=Cyan7425_1187 PE=4 SV=1
          Length = 243

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
 Frame = -1

Query: 229 GGARRLTKSNFPAR---VLFAFSWWKARGRETYSGNARRLLFRTPCEDSNLRPYYASLNF 59
           G    +  S FP +    L   SW  + GRET +G   R LF    E     PY+  L  
Sbjct: 66  GNHELMMLSAFPQQSEHTLHLLSWLSSGGRETIAGYTSRDLFLEHMEWMQTLPYFLDLGD 125

Query: 58  V----SGV-PTLVSKQRNVREFC 5
           +    +GV PTL   ++   EFC
Sbjct: 126 IWLVHAGVEPTLPLAEQTTEEFC 148


>tr|B6KNM5|B6KNM5_TOXGO Putative uncharacterized protein
           OS=Toxoplasma gondii ME49 GN=TGME49_053930 PE=4 SV=1
          Length = 1857

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +2

Query: 128 CISGISLPTPCFPPRESKKNPGGKV*FGQSPCP 226
           C+ G S PTPC P    +  PGG+   G SPCP
Sbjct: 52  CLEGASEPTPC-PAGTFRDQPGGEALDGCSPCP 83


>tr|Q07YM3|Q07YM3_SHEFN ATP synthase A chain OS=Shewanella
           frigidimarina (strain NCIMB 400) GN=Sfri_3053 PE=3 SV=1
          Length = 246

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
 Frame = -3

Query: 281 QDPPASRYEDRFRRHLVRRGKEIDQIKLSRPGSFCFLLVESKGSGDLFRKCKTTFVPDAL 102
           +D   SR+++     ++   K+I+++ LS P  +   L      G LF    T+ +   +
Sbjct: 45  KDMQRSRWQNLLEVVVITISKQIEEVGLSNPHKYLGFL------GSLFLFIATSAICTVI 98

Query: 101 RGFEPP----SVLRITQFCVWCAYPRFEAKEREGV 9
            GFEPP    S       CV+ A P F   E++G+
Sbjct: 99  PGFEPPTGSLSSTVALALCVFVAVPMF-GIEKQGL 132


>tr|Q851X6|Q851X6_ORYSJ Putative uncharacterized protein
           OSJNBa0015N08.25 OS=Oryza sativa subsp. japonica
           GN=OSJNBa0015N08.25 PE=4 SV=1
          Length = 289

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
 Frame = +1

Query: 97  PRKASGTKVVLHFR----NKSPDPLLSTKRKQ--KEPGRESLIWSISLPLRTKWRRNRSS 258
           PRK  G K     R     + P P    K+K+  KEP RE      S P+ T  ++N+ +
Sbjct: 89  PRKHKGAKSEKPHRVSGEGEKPTPTKKKKKKESSKEPKREKQ--QASAPMSTPSKKNKEA 146

Query: 259 YRDAGGS 279
            RD GG+
Sbjct: 147 KRDTGGA 153


>tr|Q10AH3|Q10AH3_ORYSJ Os03g0852300 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0852300 PE=2 SV=1
          Length = 303

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
 Frame = +1

Query: 97  PRKASGTKVVLHFR----NKSPDPLLSTKRKQ--KEPGRESLIWSISLPLRTKWRRNRSS 258
           PRK  G K     R     + P P    K+K+  KEP RE      S P+ T  ++N+ +
Sbjct: 89  PRKHKGAKSEKPHRVSGEGEKPTPTKKKKKKESSKEPKREKQ--QASAPMSTPSKKNKEA 146

Query: 259 YRDAGGS 279
            RD GG+
Sbjct: 147 KRDTGGA 153


>tr|A3APU5|A3APU5_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_012817 PE=4 SV=1
          Length = 227

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
 Frame = +1

Query: 97  PRKASGTKVVLHFR----NKSPDPLLSTKRKQ--KEPGRESLIWSISLPLRTKWRRNRSS 258
           PRK  G K     R     + P P    K+K+  KEP RE      S P+ T  ++N+ +
Sbjct: 89  PRKHKGAKSEKPHRVSGEGEKPTPTKKKKKKESSKEPKREKQ--QASAPMSTPSKKNKEA 146

Query: 259 YRDAGGS 279
            RD GG+
Sbjct: 147 KRDTGGA 153


>tr|A7F0J5|A7F0J5_SCLS1 Putative uncharacterized protein
           OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 /
           Ss-1) GN=SS1G_11113 PE=4 SV=1
          Length = 557

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
 Frame = -1

Query: 193 ARVLFAFSWWKARGRETYSGNARRLLFRTPCE-----DSNLRPYYASLN 62
           A  +F+F WW A  R TY+G   + L ++        +S+ RP Y S+N
Sbjct: 507 AIAVFSFGWWWAGARRTYTGPKTKDLIQSIATEEGNYESDQRPDYGSMN 555