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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945921
Clone id YMU02A01NGRL0010_O11
Library
Length 420
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_O11. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
ATAACGGGCGAGCGAGCGAGCCATGGCGTTACCTTCTCATGCAGTCGCAGCAGCCACCAA
GAGTGGGCCCAGTGTGGTGAAGGAAATCATCTATGGCTTATCAGCAGGCCTTTTAGGGGG
GGCTCTGTGGAAGATTCACCATTTGAATGAGAGGAGGAAAACTGAAGAGTTTTATTCTAT
GCTATAGAAGAATGCAATTTCAGTTGTGGTGGAAGAATGATAGTGGCATAGTAACAATTG
ACTATTCATGTGAAACTCGAAGGAGACTTCTATATTGGACTGACAGCATTTTATCGTTTG
CAGAAATAAGTGATCTGTCAATTACACCCCTCTATTTGATGCTGTTATGGACAGCTACCT
TTCTAAAGAAGAATAACTTTTTTTGAATAACTTTTTTTTTTTAAAAAAAAAAAAACATGT
■■Homology search results ■■ -
sp_hit_id Q42841
Definition sp|Q42841|COX5C_HORVU Cytochrome c oxidase polypeptide Vc OS=Hordeum vulgare
Align length 58
Score (bit) 62.4
E-value 7.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945921|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_O11, 5'
         (402 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q42841|COX5C_HORVU Cytochrome c oxidase polypeptide Vc OS=Hor...    62   7e-10
sp|Q9SXX7|COX5C_ORYSJ Cytochrome c oxidase polypeptide Vc OS=Ory...    62   1e-09
sp|Q9FNE0|CX5C4_ARATH Putative cytochrome c oxidase polypeptide ...    60   3e-09
sp|Q9FLK2|CX5C3_ARATH Probable cytochrome c oxidase polypeptide ...    59   1e-08
sp|Q9LZQ0|CX5C2_ARATH Cytochrome c oxidase polypeptide Vc-2 OS=A...    59   1e-08
sp|O22912|CX5C1_ARATH Probable cytochrome c oxidase polypeptide ...    58   1e-08
sp|Q8VY39|CX5C2_HELAN Cytochrome c oxidase polypeptide Vc-2 OS=H...    56   5e-08
sp|P19173|COX5C_IPOBA Cytochrome c oxidase polypeptide Vc OS=Ipo...    55   8e-08
sp|Q8VY40|CX5C1_HELAN Cytochrome c oxidase polypeptide Vc-1 OS=H...    54   2e-07
sp|P98164|LRP2_HUMAN Low-density lipoprotein receptor-related pr...    30   2.8  
sp|P98158|LRP2_RAT Low-density lipoprotein receptor-related prot...    30   3.7  
sp|A2ARV4|LRP2_MOUSE Low-density lipoprotein receptor-related pr...    30   3.7  
sp|Q89LR8|SYV_BRAJA Valyl-tRNA synthetase OS=Bradyrhizobium japo...    29   8.3  

>sp|Q42841|COX5C_HORVU Cytochrome c oxidase polypeptide Vc
           OS=Hordeum vulgare GN=COX5C PE=3 SV=3
          Length = 63

 Score = 62.4 bits (150), Expect = 7e-10
 Identities = 33/58 (56%), Positives = 35/58 (60%)
 Frame = +2

Query: 44  VAAATKSGPSVVKEIIYXXXXXXXXXXXWKIHHLNERRKTEEFYSML*KNAISVVVEE 217
           VA AT  GPSVVKEI             WK+HH NE+RKT  FY ML K  ISVVVEE
Sbjct: 6   VAHATLKGPSVVKEIFIGLTLGLVAGGMWKMHHWNEQRKTRSFYDMLEKGQISVVVEE 63


>sp|Q9SXX7|COX5C_ORYSJ Cytochrome c oxidase polypeptide Vc OS=Oryza
           sativa subsp. japonica GN=COX5C PE=3 SV=3
          Length = 63

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 32/58 (55%), Positives = 35/58 (60%)
 Frame = +2

Query: 44  VAAATKSGPSVVKEIIYXXXXXXXXXXXWKIHHLNERRKTEEFYSML*KNAISVVVEE 217
           +A AT  GPSVVKEI             WK+HH NE+RKT  FY ML K  ISVVVEE
Sbjct: 6   IAHATLKGPSVVKEICIGLTLGLVAGGLWKMHHWNEQRKTRSFYDMLEKGQISVVVEE 63


>sp|Q9FNE0|CX5C4_ARATH Putative cytochrome c oxidase polypeptide
           Vc-4 OS=Arabidopsis thaliana GN=At5g40382 PE=3 SV=1
          Length = 65

 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 29/58 (50%), Positives = 36/58 (62%)
 Frame = +2

Query: 44  VAAATKSGPSVVKEIIYXXXXXXXXXXXWKIHHLNERRKTEEFYSML*KNAISVVVEE 217
           +  A   GPSVVKEIIY           WK+HH N +R+T+EFY +L K  ISVVVE+
Sbjct: 7   IGKAVYKGPSVVKEIIYGITLGFAVGGLWKMHHWNNQRRTKEFYDLLEKGEISVVVED 64


>sp|Q9FLK2|CX5C3_ARATH Probable cytochrome c oxidase polypeptide
           Vc-3 OS=Arabidopsis thaliana GN=At5g61310 PE=2 SV=1
          Length = 64

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 28/63 (44%), Positives = 36/63 (57%)
 Frame = +2

Query: 29  LPSHAVAAATKSGPSVVKEIIYXXXXXXXXXXXWKIHHLNERRKTEEFYSML*KNAISVV 208
           +  H +A AT  GPSVVKE++            WK+HH NE+RKT  FY +L +  I VV
Sbjct: 1   MAGHKIAHATLKGPSVVKELVIGLTLGLAAGGLWKMHHWNEQRKTRVFYDLLERGEIGVV 60

Query: 209 VEE 217
           V E
Sbjct: 61  VTE 63


>sp|Q9LZQ0|CX5C2_ARATH Cytochrome c oxidase polypeptide Vc-2
           OS=Arabidopsis thaliana GN=At3g62400 PE=2 SV=1
          Length = 64

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 29/63 (46%), Positives = 35/63 (55%)
 Frame = +2

Query: 29  LPSHAVAAATKSGPSVVKEIIYXXXXXXXXXXXWKIHHLNERRKTEEFYSML*KNAISVV 208
           +  H VA AT  GPSVVKE+I            WK+HH NE+RKT  FY +L +  I VV
Sbjct: 1   MAGHKVAHATLKGPSVVKELIIGLTLGLAAGGLWKMHHWNEQRKTRTFYDLLERGEIGVV 60

Query: 209 VEE 217
             E
Sbjct: 61  ASE 63


>sp|O22912|CX5C1_ARATH Probable cytochrome c oxidase polypeptide
           Vc-1 OS=Arabidopsis thaliana GN=At2g47380 PE=1 SV=1
          Length = 64

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 29/63 (46%), Positives = 35/63 (55%)
 Frame = +2

Query: 29  LPSHAVAAATKSGPSVVKEIIYXXXXXXXXXXXWKIHHLNERRKTEEFYSML*KNAISVV 208
           +  H VA AT  GPSVVKE+             WK+HH NE+RKT  FY +L +  ISVV
Sbjct: 1   MAGHKVAHATLKGPSVVKELFIGLALGLAAGGLWKMHHWNEQRKTRTFYDLLERGEISVV 60

Query: 209 VEE 217
             E
Sbjct: 61  AAE 63


>sp|Q8VY39|CX5C2_HELAN Cytochrome c oxidase polypeptide Vc-2
           OS=Helianthus annuus GN=COX5C2 PE=3 SV=1
          Length = 64

 Score = 56.2 bits (134), Expect = 5e-08
 Identities = 28/58 (48%), Positives = 34/58 (58%)
 Frame = +2

Query: 44  VAAATKSGPSVVKEIIYXXXXXXXXXXXWKIHHLNERRKTEEFYSML*KNAISVVVEE 217
           VA     GPSVVKE++            WK+HH NE+RKT  FY +L K  ISVVV+E
Sbjct: 6   VAHPVLKGPSVVKELVIGTVLGLAAGGLWKMHHWNEQRKTRAFYDLLEKGEISVVVDE 63


>sp|P19173|COX5C_IPOBA Cytochrome c oxidase polypeptide Vc
           OS=Ipomoea batatas GN=COX5C PE=1 SV=3
          Length = 64

 Score = 55.5 bits (132), Expect = 8e-08
 Identities = 27/58 (46%), Positives = 34/58 (58%)
 Frame = +2

Query: 44  VAAATKSGPSVVKEIIYXXXXXXXXXXXWKIHHLNERRKTEEFYSML*KNAISVVVEE 217
           VA     GPSVVKE++            WK+HH N +R+T+EFY ML K  ISVV +E
Sbjct: 6   VAHLVYKGPSVVKELVIGFSLGLVAGGFWKMHHWNSQRRTKEFYDMLEKGQISVVADE 63


>sp|Q8VY40|CX5C1_HELAN Cytochrome c oxidase polypeptide Vc-1
           OS=Helianthus annuus GN=COX5C1 PE=3 SV=1
          Length = 63

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 28/58 (48%), Positives = 33/58 (56%)
 Frame = +2

Query: 44  VAAATKSGPSVVKEIIYXXXXXXXXXXXWKIHHLNERRKTEEFYSML*KNAISVVVEE 217
           VA     GPS VKE+I            WK+HH NE+RKT  FY +L K  ISVVV+E
Sbjct: 6   VAHPVLKGPSEVKELIIGSVLGLAAGGLWKMHHWNEQRKTRAFYDLLEKGEISVVVQE 63


>sp|P98164|LRP2_HUMAN Low-density lipoprotein receptor-related protein
            2 OS=Homo sapiens GN=LRP2 PE=1 SV=3
          Length = 4655

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +3

Query: 201  QLWWKNDSGIVTIDYSCETRRRLLYWTDSILSFAEISDL 317
            +L W N    +TIDY+ +    LLYW D+ L + E SDL
Sbjct: 3363 KLEWPNG---ITIDYTND----LLYWADAHLGYIEYSDL 3394
tr_hit_id A9TII2
Definition tr|A9TII2|A9TII2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 65
Score (bit) 66.6
E-value 6.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945921|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_O11, 5'
         (402 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TII2|A9TII2_PHYPA Predicted protein OS=Physcomitrella paten...    67   6e-10
tr|A9SCN6|A9SCN6_PHYPA Predicted protein OS=Physcomitrella paten...    67   6e-10
tr|B4FFJ1|B4FFJ1_MAIZE Cytochrome c oxidase polypeptide Vc OS=Ze...    62   1e-08
tr|A1YMW4|A1YMW4_BRACM Cytochrome-c oxidase OS=Brassica campestr...    62   1e-08
tr|A3CIF7|A3CIF7_ORYSJ Putative uncharacterized protein OS=Oryza...    62   2e-08
tr|B6TQW4|B6TQW4_MAIZE Cytochrome c oxidase polypeptide Vc OS=Ze...    61   2e-08
tr|A7PRR4|A7PRR4_VITVI Chromosome chr14 scaffold_27, whole genom...    60   4e-08
tr|B6T216|B6T216_MAIZE Cytochrome c oxidase polypeptide Vc OS=Ze...    59   1e-07
tr|Q2HIR0|Q2HIR0_ARATH At5g61310 OS=Arabidopsis thaliana PE=4 SV=1     59   2e-07
tr|B6T8U6|B6T8U6_MAIZE Cytochrome c oxidase polypeptide Vc OS=Ze...    56   8e-07
tr|A9NJT0|A9NJT0_PICSI Putative uncharacterized protein OS=Picea...    56   8e-07
tr|A9PJU3|A9PJU3_POPJC Putative uncharacterized protein OS=Popul...    55   1e-06
tr|A9P9E1|A9P9E1_POPTR Putative uncharacterized protein OS=Popul...    55   1e-06
tr|A7PM59|A7PM59_VITVI Chromosome chr14 scaffold_21, whole genom...    49   9e-05
tr|B4D1I1|B4D1I1_9BACT Putative uncharacterized protein OS=Chtho...    34   4.2  

>tr|A9TII2|A9TII2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_222607 PE=4 SV=1
          Length = 68

 Score = 66.6 bits (161), Expect = 6e-10
 Identities = 33/65 (50%), Positives = 39/65 (60%)
 Frame = +2

Query: 20  AMALPSHAVAAATKSGPSVVKEIIYXXXXXXXXXXXWKIHHLNERRKTEEFYSML*KNAI 199
           A  LP+H  A A K+ P++VKEI Y           WKIHHLNERRKTEEFY+ L    I
Sbjct: 4   ASKLPAHVAAQANKASPNLVKEIFYGIGLGIFGGSFWKIHHLNERRKTEEFYARLEAGEI 63

Query: 200 SVVVE 214
           +V  E
Sbjct: 64  TVNAE 68


>tr|A9SCN6|A9SCN6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_210887 PE=4 SV=1
          Length = 68

 Score = 66.6 bits (161), Expect = 6e-10
 Identities = 33/65 (50%), Positives = 39/65 (60%)
 Frame = +2

Query: 20  AMALPSHAVAAATKSGPSVVKEIIYXXXXXXXXXXXWKIHHLNERRKTEEFYSML*KNAI 199
           A  LP+H  A A K+ P++VKEI Y           WKIHHLNERRKTEEFY+ L    I
Sbjct: 4   AAKLPAHVAAQANKASPNLVKEIFYGIGLGIFGGSFWKIHHLNERRKTEEFYARLEAGEI 63

Query: 200 SVVVE 214
           +V  E
Sbjct: 64  TVNAE 68


>tr|B4FFJ1|B4FFJ1_MAIZE Cytochrome c oxidase polypeptide Vc OS=Zea
           mays PE=4 SV=1
          Length = 63

 Score = 62.4 bits (150), Expect = 1e-08
 Identities = 33/58 (56%), Positives = 35/58 (60%)
 Frame = +2

Query: 44  VAAATKSGPSVVKEIIYXXXXXXXXXXXWKIHHLNERRKTEEFYSML*KNAISVVVEE 217
           VA AT  GPSVVKEI             WK+HH NE+RKT  FY ML K  ISVVVEE
Sbjct: 6   VAHATLKGPSVVKEIFIGLTLGLIAGGMWKMHHWNEQRKTRSFYDMLDKGQISVVVEE 63


>tr|A1YMW4|A1YMW4_BRACM Cytochrome-c oxidase OS=Brassica campestris
           PE=4 SV=1
          Length = 63

 Score = 62.0 bits (149), Expect = 1e-08
 Identities = 30/63 (47%), Positives = 38/63 (60%)
 Frame = +2

Query: 29  LPSHAVAAATKSGPSVVKEIIYXXXXXXXXXXXWKIHHLNERRKTEEFYSML*KNAISVV 208
           +  H +A AT  GPSVVKE++            WK+HH NE+RKT  FY +L K+ ISVV
Sbjct: 1   MAGHKIAHATLKGPSVVKELVIGLALGLAAGGLWKMHHWNEQRKTRAFYDLLDKDEISVV 60

Query: 209 VEE 217
           V E
Sbjct: 61  VAE 63


>tr|A3CIF7|A3CIF7_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_035079 PE=4 SV=1
          Length = 63

 Score = 61.6 bits (148), Expect = 2e-08
 Identities = 32/58 (55%), Positives = 35/58 (60%)
 Frame = +2

Query: 44  VAAATKSGPSVVKEIIYXXXXXXXXXXXWKIHHLNERRKTEEFYSML*KNAISVVVEE 217
           +A AT  GPSVVKEI             WK+HH NE+RKT  FY ML K  ISVVVEE
Sbjct: 6   IAHATLKGPSVVKEICIGLTLGLVAGGLWKMHHWNEQRKTRSFYDMLEKGQISVVVEE 63


>tr|B6TQW4|B6TQW4_MAIZE Cytochrome c oxidase polypeptide Vc OS=Zea
           mays PE=4 SV=1
          Length = 77

 Score = 61.2 bits (147), Expect = 2e-08
 Identities = 32/58 (55%), Positives = 35/58 (60%)
 Frame = +2

Query: 44  VAAATKSGPSVVKEIIYXXXXXXXXXXXWKIHHLNERRKTEEFYSML*KNAISVVVEE 217
           VA AT  GPSVVKEI             WK+HH NE+RKT  FY ML K  ISVVVE+
Sbjct: 6   VAHATLKGPSVVKEIFIGLTLGLIAGGMWKMHHWNEQRKTRSFYDMLDKGQISVVVED 63


>tr|A7PRR4|A7PRR4_VITVI Chromosome chr14 scaffold_27, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00022603001
           PE=4 SV=1
          Length = 63

 Score = 60.5 bits (145), Expect = 4e-08
 Identities = 30/63 (47%), Positives = 38/63 (60%)
 Frame = +2

Query: 29  LPSHAVAAATKSGPSVVKEIIYXXXXXXXXXXXWKIHHLNERRKTEEFYSML*KNAISVV 208
           + +H +A AT  GPSVVKEI             WK+HH NE++K   FY ML K+ ISVV
Sbjct: 1   MAAHKIAHATLKGPSVVKEICIGATLGLLAGGLWKMHHWNEQKKLRTFYDMLEKDQISVV 60

Query: 209 VEE 217
           V+E
Sbjct: 61  VDE 63


>tr|B6T216|B6T216_MAIZE Cytochrome c oxidase polypeptide Vc OS=Zea
           mays PE=4 SV=1
          Length = 63

 Score = 58.9 bits (141), Expect = 1e-07
 Identities = 32/58 (55%), Positives = 34/58 (58%)
 Frame = +2

Query: 44  VAAATKSGPSVVKEIIYXXXXXXXXXXXWKIHHLNERRKTEEFYSML*KNAISVVVEE 217
           VA AT  GPSVVKEI             WK+H  NE+RKT  FY ML K  ISVVVEE
Sbjct: 6   VAHATLKGPSVVKEIFIGLTLGLIAGGMWKMHXWNEQRKTRSFYDMLDKGQISVVVEE 63


>tr|Q2HIR0|Q2HIR0_ARATH At5g61310 OS=Arabidopsis thaliana PE=4 SV=1
          Length = 64

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 28/63 (44%), Positives = 36/63 (57%)
 Frame = +2

Query: 29  LPSHAVAAATKSGPSVVKEIIYXXXXXXXXXXXWKIHHLNERRKTEEFYSML*KNAISVV 208
           +  H +A AT  GPSVVKE++            WK+HH NE+RKT  FY +L +  I VV
Sbjct: 1   MAGHKIAHATLKGPSVVKELVIGLTLGLAAGGLWKMHHWNEQRKTRVFYDLLERGEIGVV 60

Query: 209 VEE 217
           V E
Sbjct: 61  VTE 63


>tr|B6T8U6|B6T8U6_MAIZE Cytochrome c oxidase polypeptide Vc OS=Zea
           mays PE=4 SV=1
          Length = 62

 Score = 56.2 bits (134), Expect = 8e-07
 Identities = 32/58 (55%), Positives = 34/58 (58%)
 Frame = +2

Query: 44  VAAATKSGPSVVKEIIYXXXXXXXXXXXWKIHHLNERRKTEEFYSML*KNAISVVVEE 217
           VA AT  GPSVVKEI             WK+HH NE+RKT  FY ML K  I VVVEE
Sbjct: 6   VAHATLKGPSVVKEIFIGLTLGLIAGGMWKMHHWNEQRKTRSFYDMLDKGQI-VVVEE 62