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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945922
Clone id YMU02A01NGRL0010_O12
Library
Length 379
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_O12. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GAGGGCAAGCAAGGTCCGGCTATTCCTTTACCTGACAATGTCACAATTCACAGTCCCAAG
GATGAAGAAGAACTCATCCCAAAATCAGTCAGCAAAGAAGAGCCCGTGCACCAAATCGCT
TAGATCCTTAAAGCAAGGAATCCCGATGTAATTATGGGGTTAACATTGTCCTCTGGGAGA
GCTGTAATGCAGGTAGGGAGGGATTTTAGATTTTGATGCAAACTTTTCAGTCACTACTAT
GAGGTGGAGTTTTTTGAGCTTTTTCTCGTGATCTGTTTTCTAAACTGGGCTCTGTAATAG
TGTAGCAAAATGCTTTTCTTGCTACTTAATGGTTTTCTATTTGTGACTCGAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9FJA6
Definition sp|Q9FJA6|RS33_ARATH 40S ribosomal protein S3-3 OS=Arabidopsis thaliana
Align length 26
Score (bit) 37.0
E-value 0.03
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945922|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_O12, 5'
         (350 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9FJA6|RS33_ARATH 40S ribosomal protein S3-3 OS=Arabidopsis t...    37   0.030
sp|Q9M339|RS32_ARATH 40S ribosomal protein S3-2 OS=Arabidopsis t...    35   0.088
sp|Q9SIP7|RS31_ARATH 40S ribosomal protein S3-1 OS=Arabidopsis t...    35   0.11 
sp|P02350|RS31_XENLA 40S ribosomal protein S3-A OS=Xenopus laevi...    33   0.44 
sp|P47835|RS32_XENLA 40S ribosomal protein S3-B OS=Xenopus laevi...    33   0.57 
sp|P62909|RS3_RAT 40S ribosomal protein S3 OS=Rattus norvegicus ...    32   0.75 
sp|Q5R465|RS3_PONAB 40S ribosomal protein S3 OS=Pongo abelii GN=...    32   0.75 
sp|Q0Z8U2|RS3_PIG 40S ribosomal protein S3 OS=Sus scrofa GN=RPS3...    32   0.75 
sp|P62908|RS3_MOUSE 40S ribosomal protein S3 OS=Mus musculus GN=...    32   0.75 
sp|P23396|RS3_HUMAN 40S ribosomal protein S3 OS=Homo sapiens GN=...    32   0.75 
sp|Q3T169|RS3_BOVIN 40S ribosomal protein S3 OS=Bos taurus GN=RP...    32   0.75 
sp|P79891|RS3_AMBME 40S ribosomal protein S3 OS=Ambystoma mexica...    32   0.75 
sp|Q90YS2|RS3_ICTPU 40S ribosomal protein S3 OS=Ictalurus puncta...    32   0.97 
sp|P48153|RS3_MANSE 40S ribosomal protein S3 OS=Manduca sexta GN...    30   2.8  
sp|Q06559|RS3_DROME 40S ribosomal protein S3 OS=Drosophila melan...    30   2.8  
sp|P05750|RS3_YEAST 40S ribosomal protein S3 OS=Saccharomyces ce...    30   4.8  

>sp|Q9FJA6|RS33_ARATH 40S ribosomal protein S3-3 OS=Arabidopsis
           thaliana GN=RPS3C PE=2 SV=1
          Length = 248

 Score = 37.0 bits (84), Expect = 0.030
 Identities = 15/26 (57%), Positives = 20/26 (76%)
 Frame = +1

Query: 1   EGKQGPAIPLPDNVTIHSPKDEEELI 78
           +GKQGP  PLPD V IH+PK+++  I
Sbjct: 195 KGKQGPMTPLPDVVIIHTPKEDDVYI 220


>sp|Q9M339|RS32_ARATH 40S ribosomal protein S3-2 OS=Arabidopsis
           thaliana GN=RPS3B PE=2 SV=1
          Length = 249

 Score = 35.4 bits (80), Expect = 0.088
 Identities = 15/25 (60%), Positives = 18/25 (72%)
 Frame = +1

Query: 1   EGKQGPAIPLPDNVTIHSPKDEEEL 75
           +G  GP  PLPD V IHSPK+EE +
Sbjct: 195 KGISGPKTPLPDVVIIHSPKEEEAI 219


>sp|Q9SIP7|RS31_ARATH 40S ribosomal protein S3-1 OS=Arabidopsis
           thaliana GN=RPS3A PE=2 SV=1
          Length = 250

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = +1

Query: 4   GKQGPAIPLPDNVTIHSPKDE 66
           GK GP  PLPD V IH+PKD+
Sbjct: 196 GKSGPKTPLPDVVIIHAPKDD 216


>sp|P02350|RS31_XENLA 40S ribosomal protein S3-A OS=Xenopus laevis
           GN=rps3-A PE=2 SV=2
          Length = 246

 Score = 33.1 bits (74), Expect = 0.44
 Identities = 20/48 (41%), Positives = 26/48 (54%)
 Frame = +1

Query: 4   GKQGPAIPLPDNVTIHSPKDEEELIPKSVSKEEPVHQIA*ILKARNPD 147
           GK GP  PLPD+V+I  PKD  E++P +   E+         KA  PD
Sbjct: 196 GKIGPKKPLPDHVSIVEPKD--EIVPTTPISEQ---------KAAKPD 232


>sp|P47835|RS32_XENLA 40S ribosomal protein S3-B OS=Xenopus laevis
           GN=rps3-B PE=2 SV=1
          Length = 246

 Score = 32.7 bits (73), Expect = 0.57
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +1

Query: 4   GKQGPAIPLPDNVTIHSPKDEEELIPKSVSKEE 102
           GK GP  PLPD+V+I  PKD  E++P +   E+
Sbjct: 196 GKIGPKKPLPDHVSIVEPKD--EIVPTTPISEQ 226


>sp|P62909|RS3_RAT 40S ribosomal protein S3 OS=Rattus norvegicus
           GN=Rps3 PE=2 SV=1
          Length = 243

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +1

Query: 4   GKQGPAIPLPDNVTIHSPKDEEELIPKSVSKEE 102
           GK GP  PLPD+V+I  PKD  E++P +   E+
Sbjct: 196 GKIGPKKPLPDHVSIVEPKD--EILPTTPISEQ 226


>sp|Q5R465|RS3_PONAB 40S ribosomal protein S3 OS=Pongo abelii
           GN=RPS3 PE=2 SV=1
          Length = 243

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +1

Query: 4   GKQGPAIPLPDNVTIHSPKDEEELIPKSVSKEE 102
           GK GP  PLPD+V+I  PKD  E++P +   E+
Sbjct: 196 GKIGPKKPLPDHVSIVEPKD--EILPTTPISEQ 226


>sp|Q0Z8U2|RS3_PIG 40S ribosomal protein S3 OS=Sus scrofa GN=RPS3
           PE=2 SV=1
          Length = 243

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +1

Query: 4   GKQGPAIPLPDNVTIHSPKDEEELIPKSVSKEE 102
           GK GP  PLPD+V+I  PKD  E++P +   E+
Sbjct: 196 GKIGPKKPLPDHVSIVEPKD--EILPTTPISEQ 226


>sp|P62908|RS3_MOUSE 40S ribosomal protein S3 OS=Mus musculus
           GN=Rps3 PE=1 SV=1
          Length = 243

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +1

Query: 4   GKQGPAIPLPDNVTIHSPKDEEELIPKSVSKEE 102
           GK GP  PLPD+V+I  PKD  E++P +   E+
Sbjct: 196 GKIGPKKPLPDHVSIVEPKD--EILPTTPISEQ 226


>sp|P23396|RS3_HUMAN 40S ribosomal protein S3 OS=Homo sapiens
           GN=RPS3 PE=1 SV=2
          Length = 243

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +1

Query: 4   GKQGPAIPLPDNVTIHSPKDEEELIPKSVSKEE 102
           GK GP  PLPD+V+I  PKD  E++P +   E+
Sbjct: 196 GKIGPKKPLPDHVSIVEPKD--EILPTTPISEQ 226
tr_hit_id A7P4S2
Definition tr|A7P4S2|A7P4S2_VITVI Chromosome chr4 scaffold_6, whole genome shotgun sequence OS=Vitis vinifera
Align length 27
Score (bit) 47.0
E-value 0.0005
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945922|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_O12, 5'
         (350 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7P4S2|A7P4S2_VITVI Chromosome chr4 scaffold_6, whole genome ...    47   5e-04
tr|A5AXX8|A5AXX8_VITVI Putative uncharacterized protein OS=Vitis...    46   8e-04
tr|Q94LL1|Q94LL1_ORYSA Putative 40S ribosomal protein; contains ...    45   0.001
tr|Q6YTY2|Q6YTY2_ORYSJ Os07g0608500 protein OS=Oryza sativa subs...    45   0.001
tr|A9RVF7|A9RVF7_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.001
tr|A6N0S5|A6N0S5_ORYSI 40S ribosomal protein S3-a (Fragment) OS=...    45   0.001
tr|A2YNK7|A2YNK7_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.001
tr|A9NTN5|A9NTN5_PICSI Putative uncharacterized protein OS=Picea...    45   0.002
tr|B7FH64|B7FH64_MEDTR Putative uncharacterized protein OS=Medic...    44   0.003
tr|B7FGM5|B7FGM5_MEDTR Putative uncharacterized protein OS=Medic...    44   0.003
tr|A7PDZ8|A7PDZ8_VITVI Chromosome chr11 scaffold_13, whole genom...    44   0.003
tr|Q75G91|Q75G91_ORYSJ Os03g0577000 protein OS=Oryza sativa subs...    44   0.004
tr|Q10HT1|Q10HT1_ORYSJ 40S ribosomal protein S3, putative, expre...    44   0.004
tr|A6N030|A6N030_ORYSI 40S ribosomal protein S3 (Fragment) OS=Or...    44   0.004
tr|A2XIT7|A2XIT7_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.004
tr|B6TM40|B6TM40_MAIZE 40S ribosomal protein S3 OS=Zea mays PE=2...    44   0.005
tr|B3TLR8|B3TLR8_ELAGV Ribosomal protein OS=Elaeis guineensis va...    44   0.005
tr|A9RUL6|A9RUL6_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.005
tr|A7P6K3|A7P6K3_VITVI Chromosome chr9 scaffold_7, whole genome ...    44   0.005
tr|B4FHH2|B4FHH2_MAIZE Putative uncharacterized protein OS=Zea m...    43   0.009
tr|A4RVP7|A4RVP7_OSTLU Ribosomal protein S3, component of cytoso...    43   0.009
tr|Q7X9L6|Q7X9L6_WHEAT 40S ribosomal protein (Fragment) OS=Triti...    42   0.012
tr|B6U634|B6U634_MAIZE Putative uncharacterized protein OS=Zea m...    42   0.015
tr|B6TB97|B6TB97_MAIZE 40S ribosomal protein S3 OS=Zea mays PE=2...    42   0.015
tr|A9NR91|A9NR91_PICSI Putative uncharacterized protein OS=Picea...    42   0.015
tr|Q8L804|Q8L804_WHEAT Putative 40S ribosomal protein S3 OS=Trit...    42   0.020
tr|Q01BA3|Q01BA3_OSTTA Putative ribosomal protein (ISS) OS=Ostre...    41   0.026
tr|Q2VCJ9|Q2VCJ9_SOLTU Putative uncharacterized protein OS=Solan...    41   0.034
tr|Q2PYZ0|Q2PYZ0_SOLTU 40S ribosomal protein-like protein OS=Sol...    41   0.034
tr|A9PBQ6|A9PBQ6_POPTR Putative uncharacterized protein OS=Popul...    41   0.034

>tr|A7P4S2|A7P4S2_VITVI Chromosome chr4 scaffold_6, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00032258001
           PE=3 SV=1
          Length = 208

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 19/27 (70%), Positives = 23/27 (85%)
 Frame = +1

Query: 1   EGKQGPAIPLPDNVTIHSPKDEEELIP 81
           +GKQGP  PLPD VTIH+PK+EEE +P
Sbjct: 168 KGKQGPTTPLPDLVTIHTPKEEEEYVP 194


>tr|A5AXX8|A5AXX8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_022106 PE=3 SV=1
          Length = 252

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 19/27 (70%), Positives = 22/27 (81%)
 Frame = +1

Query: 1   EGKQGPAIPLPDNVTIHSPKDEEELIP 81
           +GKQGP  PLPD VTIH PK+EEE +P
Sbjct: 212 KGKQGPTTPLPDLVTIHXPKEEEEYVP 238


>tr|Q94LL1|Q94LL1_ORYSA Putative 40S ribosomal protein; contains
           C-terminal domain OS=Oryza sativa GN=OSJNBb0024A20.19
           PE=3 SV=1
          Length = 233

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 22/36 (61%), Positives = 27/36 (75%)
 Frame = +1

Query: 1   EGKQGPAIPLPDNVTIHSPKDEEELIPKSVSKEEPV 108
           +GKQGP  PLPD VTIH+PKDE+E   K ++ E PV
Sbjct: 197 KGKQGPMTPLPDLVTIHAPKDEDE-FSKPLTAEIPV 231


>tr|Q6YTY2|Q6YTY2_ORYSJ Os07g0608500 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0018L13.2 PE=2 SV=1
          Length = 233

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 22/36 (61%), Positives = 27/36 (75%)
 Frame = +1

Query: 1   EGKQGPAIPLPDNVTIHSPKDEEELIPKSVSKEEPV 108
           +GKQGP  PLPD VTIH+PKDE+E   K ++ E PV
Sbjct: 197 KGKQGPMTPLPDLVTIHAPKDEDE-FSKPLTAEIPV 231


>tr|A9RVF7|A9RVF7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_162268 PE=3 SV=1
          Length = 230

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 23/35 (65%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
 Frame = +1

Query: 1   EGKQGPAIPLPDNVTIHSPKDEEELIPK-SVSKEE 102
           +GKQGP  PLPD VTIH PK+EEE   K  V KEE
Sbjct: 195 KGKQGPMTPLPDVVTIHMPKEEEEFAHKPHVGKEE 229


>tr|A6N0S5|A6N0S5_ORYSI 40S ribosomal protein S3-a (Fragment)
           OS=Oryza sativa subsp. indica PE=2 SV=1
          Length = 85

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 22/36 (61%), Positives = 27/36 (75%)
 Frame = +1

Query: 1   EGKQGPAIPLPDNVTIHSPKDEEELIPKSVSKEEPV 108
           +GKQGP  PLPD VTIH+PKDE+E   K ++ E PV
Sbjct: 49  KGKQGPMTPLPDLVTIHAPKDEDE-FSKPLTAEIPV 83


>tr|A2YNK7|A2YNK7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_26820 PE=3 SV=1
          Length = 233

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 22/36 (61%), Positives = 27/36 (75%)
 Frame = +1

Query: 1   EGKQGPAIPLPDNVTIHSPKDEEELIPKSVSKEEPV 108
           +GKQGP  PLPD VTIH+PKDE+E   K ++ E PV
Sbjct: 197 KGKQGPMTPLPDLVTIHAPKDEDE-FSKPLTAEIPV 231


>tr|A9NTN5|A9NTN5_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 233

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 19/28 (67%), Positives = 22/28 (78%)
 Frame = +1

Query: 1   EGKQGPAIPLPDNVTIHSPKDEEELIPK 84
           +GKQGP  PLPD VTIH+PK+EEE   K
Sbjct: 195 KGKQGPTTPLPDLVTIHTPKEEEEFAAK 222


>tr|B7FH64|B7FH64_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 239

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 19/26 (73%), Positives = 22/26 (84%)
 Frame = +1

Query: 1   EGKQGPAIPLPDNVTIHSPKDEEELI 78
           +GKQGP  PLPD VTIH+PK+EEE I
Sbjct: 195 KGKQGPKTPLPDIVTIHTPKEEEEYI 220


>tr|B7FGM5|B7FGM5_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 239

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 19/26 (73%), Positives = 22/26 (84%)
 Frame = +1

Query: 1   EGKQGPAIPLPDNVTIHSPKDEEELI 78
           +GKQGP  PLPD VTIH+PK+EEE I
Sbjct: 195 KGKQGPKTPLPDIVTIHTPKEEEEYI 220