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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945923
Clone id YMU02A01NGRL0010_O14
Library
Length 377
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_O14. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GATAAGCTGCCGCATCCACTCCAGTACAAGGTTATCATCAAGGTCCAAACCACAAGCCAA
TCTTCACCCATGCAAGCATACAATCAGGCTATTAATGATTTGGACAAGGAGCTTGATCAT
TTGAAAGAAAGCTTTACGACGGAGATGCAGAGAAAGCAAGAATATTACTGAGGCCAAGTG
GCTCAATACTGCTGTTTTGAAATAGCTAGGAATTCCTCTAATAGGGAACAGGGCTTGTTA
CTTTTGGTTGTGCAGACCTTATATGGGCAAAAGTTGAAGTATATACATCAGTGTCTTTTC
TGGGTGTGTTTTCCAACAAGTAAGTATACTACAATAATTTTATCAGACAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q38859
Definition sp|Q38859|RPB11_ARATH DNA-directed RNA polymerase II subunit RPB11 OS=Arabidopsis thaliana
Align length 50
Score (bit) 80.9
E-value 2.0e-15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945923|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_O14, 5'
         (348 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q38859|RPB11_ARATH DNA-directed RNA polymerase II subunit RPB...    81   2e-15
sp|P52435|RPB11_HUMAN DNA-directed RNA polymerase II subunit RPB...    58   1e-08
sp|Q32P79|RPB11_BOVIN DNA-directed RNA polymerase II subunit RPB...    58   1e-08
sp|O08740|RPB11_MOUSE DNA-directed RNA polymerase II subunit RPB...    57   2e-08
sp|Q7PVQ9|RPB11_ANOGA DNA-directed RNA polymerase II subunit RPB...    56   6e-08
sp|Q9H1A7|RPB1C_HUMAN DNA-directed RNA polymerase II subunit RPB...    55   1e-07
sp|Q9GZM3|RPB1B_HUMAN DNA-directed RNA polymerase II subunit RPB...    55   1e-07
sp|Q9VJE4|RPB11_DROME DNA-directed RNA polymerase II subunit RPB...    52   7e-07
sp|Q86JJ5|RPB11_DICDI DNA-directed RNA polymerase II subunit rpb...    45   1e-04
sp|Q60SM4|RPB11_CAEBR Probable DNA-directed RNA polymerase II su...    44   3e-04
sp|Q9XVH6|RPB11_CAEEL Probable DNA-directed RNA polymerase II su...    43   4e-04
sp|P87123|RPB11_SCHPO DNA-directed RNA polymerase II subunit RPB...    40   0.003
sp|A4YHV0|RPOL_METS5 DNA-directed RNA polymerase subunit L OS=Me...    40   0.005
sp|P38902|RPB11_YEAST DNA-directed RNA polymerase II subunit RPB...    33   0.44 
sp|Q09177|RPAC2_SCHPO DNA-directed RNA polymerases I and III sub...    33   0.57 
sp|Q09216|YP67_CAEEL Uncharacterized protein B0495.7 OS=Caenorha...    30   2.8  
sp|Q980K0|RPOL_SULSO DNA-directed RNA polymerase subunit L OS=Su...    30   3.7  
sp|Q86VS8|HOOK3_HUMAN Protein Hook homolog 3 OS=Homo sapiens GN=...    30   3.7  
sp|P28000|RPAC2_YEAST DNA-directed RNA polymerases I and III sub...    30   4.8  
sp|Q5XK67|RPAC2_XENLA DNA-directed RNA polymerases I and III sub...    30   4.8  
sp|P34476|RPAC2_CAEEL Probable DNA-directed RNA polymerases I an...    30   4.8  
sp|O76329|ACTNB_DICDI Interaptin OS=Dictyostelium discoideum GN=...    30   4.8  

>sp|Q38859|RPB11_ARATH DNA-directed RNA polymerase II subunit RPB11
           OS=Arabidopsis thaliana GN=RPB13.6 PE=2 SV=1
          Length = 116

 Score = 80.9 bits (198), Expect = 2e-15
 Identities = 35/50 (70%), Positives = 44/50 (88%)
 Frame = +1

Query: 4   KLPHPLQYKVIIKVQTTSQSSPMQAYNQAINDLDKELDHLKESFTTEMQR 153
           +LPHPL+YK+I+++ TTSQSSPMQAYNQAINDLDKELD+LK  F  E+ +
Sbjct: 62  QLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEVAK 111


>sp|P52435|RPB11_HUMAN DNA-directed RNA polymerase II subunit
           RPB11-a OS=Homo sapiens GN=POLR2J PE=1 SV=1
          Length = 117

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 27/53 (50%), Positives = 37/53 (69%)
 Frame = +1

Query: 4   KLPHPLQYKVIIKVQTTSQSSPMQAYNQAINDLDKELDHLKESFTTEMQRKQE 162
           K+PHPL++K+II+VQTT   SP +A+  AI DL  EL  L+E F   ++ KQE
Sbjct: 62  KVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQE 114


>sp|Q32P79|RPB11_BOVIN DNA-directed RNA polymerase II subunit RPB11
           OS=Bos taurus GN=POLR2J PE=3 SV=1
          Length = 117

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 27/53 (50%), Positives = 37/53 (69%)
 Frame = +1

Query: 4   KLPHPLQYKVIIKVQTTSQSSPMQAYNQAINDLDKELDHLKESFTTEMQRKQE 162
           K+PHPL++K+II+VQTT   SP +A+  AI DL  EL  L+E F   ++ KQE
Sbjct: 62  KVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQE 114


>sp|O08740|RPB11_MOUSE DNA-directed RNA polymerase II subunit RPB11
           OS=Mus musculus GN=Polr2j PE=2 SV=1
          Length = 117

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 27/53 (50%), Positives = 37/53 (69%)
 Frame = +1

Query: 4   KLPHPLQYKVIIKVQTTSQSSPMQAYNQAINDLDKELDHLKESFTTEMQRKQE 162
           K+PHPL++K+II+VQTT   SP +A+  AI DL  EL  L+E F   ++ KQE
Sbjct: 62  KVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRGAIKDKQE 114


>sp|Q7PVQ9|RPB11_ANOGA DNA-directed RNA polymerase II subunit RPB11
           OS=Anopheles gambiae GN=Rpb11 PE=3 SV=2
          Length = 117

 Score = 55.8 bits (133), Expect = 6e-08
 Identities = 25/53 (47%), Positives = 37/53 (69%)
 Frame = +1

Query: 4   KLPHPLQYKVIIKVQTTSQSSPMQAYNQAINDLDKELDHLKESFTTEMQRKQE 162
           KLPHPL++K ++++QTTS+ SP +A+  AI DL  EL   +E F   M+ K+E
Sbjct: 62  KLPHPLEHKFVLRIQTTSEYSPHEAFMNAITDLLSELSLFEERFREAMKEKKE 114


>sp|Q9H1A7|RPB1C_HUMAN DNA-directed RNA polymerase II subunit
           RPB11-b2 OS=Homo sapiens GN=POLR2J3 PE=3 SV=1
          Length = 115

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 25/46 (54%), Positives = 33/46 (71%)
 Frame = +1

Query: 4   KLPHPLQYKVIIKVQTTSQSSPMQAYNQAINDLDKELDHLKESFTT 141
           K+PHPL++K+II+VQTT   SP +A+  AI DL  EL  L+E F T
Sbjct: 61  KVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRT 106


>sp|Q9GZM3|RPB1B_HUMAN DNA-directed RNA polymerase II subunit
           RPB11-b1 OS=Homo sapiens GN=POLR2J2 PE=2 SV=1
          Length = 115

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 25/46 (54%), Positives = 33/46 (71%)
 Frame = +1

Query: 4   KLPHPLQYKVIIKVQTTSQSSPMQAYNQAINDLDKELDHLKESFTT 141
           K+PHPL++K+II+VQTT   SP +A+  AI DL  EL  L+E F T
Sbjct: 61  KVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRT 106


>sp|Q9VJE4|RPB11_DROME DNA-directed RNA polymerase II subunit RPB11
           OS=Drosophila melanogaster GN=Rpb11 PE=1 SV=1
          Length = 117

 Score = 52.4 bits (124), Expect = 7e-07
 Identities = 23/53 (43%), Positives = 36/53 (67%)
 Frame = +1

Query: 4   KLPHPLQYKVIIKVQTTSQSSPMQAYNQAINDLDKELDHLKESFTTEMQRKQE 162
           K+PHPL++K +I++QTT+  SP +A+  AI DL  EL   +E F   ++ K+E
Sbjct: 62  KVPHPLEHKFVIRIQTTADYSPQEAFMNAITDLLAELSLFEERFKDAIKEKKE 114


>sp|Q86JJ5|RPB11_DICDI DNA-directed RNA polymerase II subunit rpb11
           OS=Dictyostelium discoideum GN=polr2j PE=3 SV=1
          Length = 120

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 16/52 (30%), Positives = 36/52 (69%)
 Frame = +1

Query: 4   KLPHPLQYKVIIKVQTTSQSSPMQAYNQAINDLDKELDHLKESFTTEMQRKQ 159
           ++PHPL++ V I++QT + ++P++   +++  L +E   L+ SF  ++Q+K+
Sbjct: 62  RMPHPLEHNVNIRIQTNNNTNPLECVQKSMECLSREFTSLENSFIEQVQKKR 113


>sp|Q60SM4|RPB11_CAEBR Probable DNA-directed RNA polymerase II
           subunit RPB11 OS=Caenorhabditis briggsae GN=CBG20834
           PE=3 SV=1
          Length = 122

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 19/50 (38%), Positives = 33/50 (66%)
 Frame = +1

Query: 4   KLPHPLQYKVIIKVQTTSQSSPMQAYNQAINDLDKELDHLKESFTTEMQR 153
           K PHPL++K++++VQTT+ ++P  A   AI DL  EL  L+    + +++
Sbjct: 61  KNPHPLEHKILLRVQTTNATTPADALTTAITDLVGELSLLEHRIDSAIKK 110
tr_hit_id A9NN58
Definition tr|A9NN58|A9NN58_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 52
Score (bit) 87.0
E-value 4.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945923|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_O14, 5'
         (348 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NN58|A9NN58_PICSI Putative uncharacterized protein OS=Picea...    87   4e-16
tr|A9PCB4|A9PCB4_POPTR Putative uncharacterized protein OS=Popul...    87   5e-16
tr|A7P675|A7P675_VITVI Chromosome chr4 scaffold_6, whole genome ...    87   5e-16
tr|A5BQX0|A5BQX0_VITVI Putative uncharacterized protein OS=Vitis...    87   5e-16
tr|B7FGH5|B7FGH5_MEDTR Putative uncharacterized protein OS=Medic...    82   1e-14
tr|B4FJS1|B4FJS1_MAIZE DNA-directed RNA polymerase II subunit J ...    80   5e-14
tr|A9RFS8|A9RFS8_PHYPA Predicted protein OS=Physcomitrella paten...    80   5e-14
tr|A9RYQ0|A9RYQ0_PHYPA Predicted protein OS=Physcomitrella paten...    77   4e-13
tr|Q6ZA50|Q6ZA50_ORYSJ Os07g0172500 protein OS=Oryza sativa subs...    75   2e-12
tr|A3BH10|A3BH10_ORYSJ Putative uncharacterized protein OS=Oryza...    75   2e-12
tr|A2YIL5|A2YIL5_ORYSI Putative uncharacterized protein OS=Oryza...    75   2e-12
tr|Q4VBU5|Q4VBU5_DANRE Novel protein (Zgc:110005) OS=Danio rerio...    58   2e-07
tr|Q28CA5|Q28CA5_XENTR Polymerase (RNA) II (DNA directed) polype...    58   2e-07
tr|B5G2R1|B5G2R1_TAEGU Putative DNA directed RNA polymerase II p...    58   2e-07
tr|Q6PI63|Q6PI63_MOUSE Polymerase (RNA) II (DNA directed) polype...    58   2e-07
tr|Q3TYI2|Q3TYI2_MOUSE Putative uncharacterized protein OS=Mus m...    58   2e-07
tr|A5D6V8|A5D6V8_HUMAN Polymerase (RNA) II (DNA directed) polype...    58   2e-07
tr|Q5M778|Q5M778_XENLA LOC496260 protein OS=Xenopus laevis GN=po...    58   3e-07
tr|Q4TAB3|Q4TAB3_TETNG Chromosome undetermined SCAF7390, whole g...    58   3e-07
tr|B5XEX2|B5XEX2_SALSA DNA-directed RNA polymerase II subunit RP...    58   3e-07
tr|B3S6B1|B3S6B1_TRIAD Putative uncharacterized protein OS=Trich...    55   2e-06
tr|B7PS85|B7PS85_IXOSC RNA polymerases L, putative OS=Ixodes sca...    55   2e-06
tr|A6NK79|A6NK79_HUMAN Putative uncharacterized protein ENSP0000...    55   2e-06
tr|Q59FR2|Q59FR2_HUMAN MGC13098 protein variant (Fragment) OS=Ho...    54   4e-06
tr|Q16IF1|Q16IF1_AEDAE DNA-directed RNA polymerase II 13.3 kDa p...    54   5e-06
tr|B0WDB4|B0WDB4_CULQU DNA-directed RNA polymerase II subunit J ...    54   5e-06
tr|Q29MR4|Q29MR4_DROPS GA19897 OS=Drosophila pseudoobscura pseud...    53   7e-06
tr|B4G8W2|B4G8W2_DROPE GL18757 OS=Drosophila persimilis GN=GL187...    53   7e-06
tr|A7SGE2|A7SGE2_NEMVE Predicted protein OS=Nematostella vectens...    53   7e-06
tr|Q9H1A6|Q9H1A6_HUMAN RPB11a protein OS=Homo sapiens GN=POLR2J1...    53   7e-06

>tr|A9NN58|A9NN58_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 120

 Score = 87.0 bits (214), Expect = 4e-16
 Identities = 40/52 (76%), Positives = 46/52 (88%)
 Frame = +1

Query: 4   KLPHPLQYKVIIKVQTTSQSSPMQAYNQAINDLDKELDHLKESFTTEMQRKQ 159
           KLPHPLQYK+++++QTTSQSSPMQAYN AI+DLDKELDHLK SF  EM R Q
Sbjct: 62  KLPHPLQYKILLRIQTTSQSSPMQAYNLAIDDLDKELDHLKRSFEDEMVRLQ 113


>tr|A9PCB4|A9PCB4_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 116

 Score = 86.7 bits (213), Expect = 5e-16
 Identities = 38/55 (69%), Positives = 46/55 (83%)
 Frame = +1

Query: 4   KLPHPLQYKVIIKVQTTSQSSPMQAYNQAINDLDKELDHLKESFTTEMQRKQEYY 168
           KLPHPL+YK+I+++ TTSQSSPMQAYNQAINDLDKELDHLK +F  E+  +   Y
Sbjct: 62  KLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAELANRPGQY 116


>tr|A7P675|A7P675_VITVI Chromosome chr4 scaffold_6, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00032808001
           PE=4 SV=1
          Length = 116

 Score = 86.7 bits (213), Expect = 5e-16
 Identities = 39/55 (70%), Positives = 46/55 (83%)
 Frame = +1

Query: 4   KLPHPLQYKVIIKVQTTSQSSPMQAYNQAINDLDKELDHLKESFTTEMQRKQEYY 168
           KLPHPLQYK+II++ TTSQSSPMQAYNQAINDLDKELD+LK +F  E+ +    Y
Sbjct: 62  KLPHPLQYKIIIRIHTTSQSSPMQAYNQAINDLDKELDYLKNAFEVELAKHSREY 116


>tr|A5BQX0|A5BQX0_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_015574 PE=4 SV=1
          Length = 129

 Score = 86.7 bits (213), Expect = 5e-16
 Identities = 39/55 (70%), Positives = 46/55 (83%)
 Frame = +1

Query: 4   KLPHPLQYKVIIKVQTTSQSSPMQAYNQAINDLDKELDHLKESFTTEMQRKQEYY 168
           KLPHPLQYK+II++ TTSQSSPMQAYNQAINDLDKELD+LK +F  E+ +    Y
Sbjct: 75  KLPHPLQYKIIIRIHTTSQSSPMQAYNQAINDLDKELDYLKNAFEVELAKHSREY 129


>tr|B7FGH5|B7FGH5_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=4 SV=1
          Length = 116

 Score = 82.4 bits (202), Expect = 1e-14
 Identities = 38/55 (69%), Positives = 45/55 (81%)
 Frame = +1

Query: 4   KLPHPLQYKVIIKVQTTSQSSPMQAYNQAINDLDKELDHLKESFTTEMQRKQEYY 168
           KLPHPLQYK+II++ TTSQSSPMQAYNQ+INDLDKELD LK  F  E+ +  + Y
Sbjct: 62  KLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGFEAELLKFSKDY 116


>tr|B4FJS1|B4FJS1_MAIZE DNA-directed RNA polymerase II subunit J
           OS=Zea mays PE=4 SV=1
          Length = 120

 Score = 80.1 bits (196), Expect = 5e-14
 Identities = 35/53 (66%), Positives = 45/53 (84%)
 Frame = +1

Query: 4   KLPHPLQYKVIIKVQTTSQSSPMQAYNQAINDLDKELDHLKESFTTEMQRKQE 162
           KLPHPLQYK+I+++ TTSQSSP QAY QAINDLDKEL++LK++F  E  R ++
Sbjct: 62  KLPHPLQYKIIVRIHTTSQSSPTQAYTQAINDLDKELEYLKQAFEDEKNRYED 114


>tr|A9RFS8|A9RFS8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_174357 PE=4 SV=1
          Length = 117

 Score = 80.1 bits (196), Expect = 5e-14
 Identities = 38/56 (67%), Positives = 46/56 (82%), Gaps = 1/56 (1%)
 Frame = +1

Query: 4   KLPHPLQYKVIIKVQTTSQSSPMQAYNQAINDLDKELDHLKESFTTEMQRKQ-EYY 168
           +LPHPLQY++++K+QTTSQSSPMQAYN AI DL KELDHLK  F  E  +KQ +YY
Sbjct: 62  RLPHPLQYRLVVKIQTTSQSSPMQAYNLAITDLIKELDHLKAVFEHETSQKQADYY 117


>tr|A9RYQ0|A9RYQ0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_121556 PE=4 SV=1
          Length = 137

 Score = 77.0 bits (188), Expect = 4e-13
 Identities = 34/50 (68%), Positives = 41/50 (82%)
 Frame = +1

Query: 4   KLPHPLQYKVIIKVQTTSQSSPMQAYNQAINDLDKELDHLKESFTTEMQR 153
           KLPHPLQY+V++K+QT SQSSPMQAYN AI DL KELDHLK +F   + +
Sbjct: 62  KLPHPLQYRVVVKIQTNSQSSPMQAYNLAITDLTKELDHLKATFEVNLMQ 111


>tr|Q6ZA50|Q6ZA50_ORYSJ Os07g0172500 protein OS=Oryza sativa subsp.
           japonica GN=P0496D04.29 PE=4 SV=1
          Length = 120

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 33/53 (62%), Positives = 44/53 (83%)
 Frame = +1

Query: 4   KLPHPLQYKVIIKVQTTSQSSPMQAYNQAINDLDKELDHLKESFTTEMQRKQE 162
           KLPHPLQYK++++V T +QS+P QAY QAINDLDKEL++LK++F  E  R +E
Sbjct: 62  KLPHPLQYKILVRVHTANQSTPTQAYTQAINDLDKELENLKQAFEDEKIRYEE 114


>tr|A3BH10|A3BH10_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_022332 PE=4 SV=1
          Length = 135

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 33/53 (62%), Positives = 44/53 (83%)
 Frame = +1

Query: 4   KLPHPLQYKVIIKVQTTSQSSPMQAYNQAINDLDKELDHLKESFTTEMQRKQE 162
           KLPHPLQYK++++V T +QS+P QAY QAINDLDKEL++LK++F  E  R +E
Sbjct: 77  KLPHPLQYKILVRVHTANQSTPTQAYTQAINDLDKELENLKQAFEDEKIRYEE 129