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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945934
Clone id YMU02A01NGRL0010_P06
Library
Length 502
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_P06. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GGGGCTCCTTAAGGTTGCTAGATATGCGGAACTGTAAAGGTGTAACAGCTCTTGTGGTGA
GCTGGCTGAAGAAGCCTTATTTCCCAAGGTTGCGGTGGTTGGGCTTGGCTGGAATACTGT
TACCAAATTAATGCTGGATTTCCTAGTCCAGGAGCGTCCTTACATGCGCCTACTTGACCA
TGGCCTTGAGCTGGATGGTGGTGATGCAGAGGAAACCCATCGATCTAGTGATATAGTGGA
TGAGCTTGAAAGGTGGTTGGGAGCTGATTGAGTCTTGGGAAGCCAGAATGGAGCTGTTTG
GTCTCTCTTTGGCCCTTGATCAAAGTGGTCAAAGCTTTGCCTGTCATGGTAAACAGAGAT
AAGGATGATCAAAAGTGGAGTATTATGGCCTAATATAGCTATTTGAAGTCTAAATGCATT
ACTCGGAGCCTTTTTGGACTGCCATGAAATTATCAAGGCATTCTATGTTCATCAAAAAAA
AAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9SDA8
Definition sp|Q9SDA8|FBL10_ARATH F-box/LRR-repeat protein 10 OS=Arabidopsis thaliana
Align length 36
Score (bit) 54.3
E-value 3.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945934|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_P06, 5'
         (473 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9SDA8|FBL10_ARATH F-box/LRR-repeat protein 10 OS=Arabidopsis...    54   3e-07
sp|Q9ZWC6|ATB_ARATH F-box protein At-B OS=Arabidopsis thaliana G...    37   0.058
sp|Q9Y2L9|LRCH1_HUMAN Leucine-rich repeat and calponin homology ...    33   0.64 
sp|Q6FLC5|SEY1_CANGA Protein SEY1 OS=Candida glabrata GN=SEY1 PE...    31   2.4  
sp|Q5JTD0|TJAP1_HUMAN Tight junction-associated protein 1 OS=Hom...    30   5.4  
sp|Q9DCD5|TJAP1_MOUSE Tight junction-associated protein 1 OS=Mus...    29   9.3  

>sp|Q9SDA8|FBL10_ARATH F-box/LRR-repeat protein 10 OS=Arabidopsis
           thaliana GN=FBL10 PE=2 SV=1
          Length = 656

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 22/36 (61%), Positives = 28/36 (77%)
 Frame = +3

Query: 6   SLRLLDMRNCKGVTALVVSWLKKPYFPRLRWLGLAG 113
           SL LLD+ +C G+T L   WLKKP+FPRL+WLG+ G
Sbjct: 543 SLCLLDLYDCGGITQLSFKWLKKPFFPRLKWLGITG 578


>sp|Q9ZWC6|ATB_ARATH F-box protein At-B OS=Arabidopsis thaliana
           GN=ATB PE=2 SV=1
          Length = 607

 Score = 36.6 bits (83), Expect = 0.058
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +3

Query: 9   LRLLDMRNCKGVTALVVSWLKKPYFPRLRWLGL 107
           LR L++ NC  +T   + WL KP F  L WLG+
Sbjct: 529 LRKLNVHNCVSLTTGALRWLSKPSFAGLHWLGM 561


>sp|Q9Y2L9|LRCH1_HUMAN Leucine-rich repeat and calponin homology
           domain-containing protein 1 OS=Homo sapiens GN=LRCH1
           PE=1 SV=2
          Length = 728

 Score = 33.1 bits (74), Expect = 0.64
 Identities = 17/34 (50%), Positives = 18/34 (52%)
 Frame = -1

Query: 242 HPLYH*IDGFPLHHHHPAQGHGQVGACKDAPGLG 141
           HPL+H     P HHHH  Q HG  GA   A G G
Sbjct: 21  HPLHH-----PHHHHHHHQHHGGTGAPGGAGGGG 49


>sp|Q6FLC5|SEY1_CANGA Protein SEY1 OS=Candida glabrata GN=SEY1 PE=3
           SV=1
          Length = 783

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -3

Query: 402 IAILGHNTPLLIILISVYHDRQSFDHFDQGPKRDQTAP-FWLPKTQSAPNHLSSSSTIS 229
           I++ G  +     L+++  + Q FD  D   KR QT    WL  TQ+  NH S++ T S
Sbjct: 39  ISVFGSQSSGKSTLLNILFNTQ-FDTMDAQVKRQQTTKGIWLAHTQNVNNHKSTTDTDS 96


>sp|Q5JTD0|TJAP1_HUMAN Tight junction-associated protein 1 OS=Homo
           sapiens GN=TJAP1 PE=1 SV=1
          Length = 557

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -3

Query: 111 QPSPTTATLGNKASSASSPQELLHLYSSAYL 19
           QPSP   TL   ASSASS ++LL  +  A++
Sbjct: 389 QPSPAPLTLSAPASSASSEEDLLVSWQRAFV 419


>sp|Q9DCD5|TJAP1_MOUSE Tight junction-associated protein 1 OS=Mus
           musculus GN=Tjap1 PE=1 SV=1
          Length = 539

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -3

Query: 111 QPSPTTATLGNKASSASSPQELLHLYSSAYL 19
           QPSP  + L   ASSASS ++LL  +  A++
Sbjct: 374 QPSPAPSALSAPASSASSEEDLLASWQRAFV 404
tr_hit_id A9TB32
Definition tr|A9TB32|A9TB32_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 35
Score (bit) 60.5
E-value 4.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945934|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_P06, 5'
         (473 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TB32|A9TB32_PHYPA Predicted protein OS=Physcomitrella paten...    60   4e-08
tr|A7R6C9|A7R6C9_VITVI Chromosome undetermined scaffold_1232, wh...    59   1e-07
tr|A7P8I0|A7P8I0_VITVI Chromosome chr3 scaffold_8, whole genome ...    59   1e-07
tr|Q8H8E1|Q8H8E1_ORYSJ Putative F-box protein OS=Oryza sativa su...    57   5e-07
tr|Q10S47|Q10S47_ORYSJ Os03g0135400 protein OS=Oryza sativa subs...    57   5e-07
tr|A3ADV3|A3ADV3_ORYSJ Putative uncharacterized protein OS=Oryza...    57   5e-07
tr|A2XC70|A2XC70_ORYSI Putative uncharacterized protein OS=Oryza...    57   5e-07
tr|A9NV99|A9NV99_PICSI Putative uncharacterized protein OS=Picea...    54   5e-06
tr|Q9ARF5|Q9ARF5_9BRAS Putative uncharacterized protein OS=Capse...    37   0.38 
tr|A7QQF8|A7QQF8_VITVI Chromosome undetermined scaffold_142, who...    36   1.1  
tr|A5C1E7|A5C1E7_VITVI Putative uncharacterized protein OS=Vitis...    35   1.4  
tr|A5FL36|A5FL36_FLAJ1 Glycosyl transferase, family 9 OS=Flavoba...    33   5.4  
tr|Q17R43|Q17R43_HUMAN LRCH1 protein OS=Homo sapiens GN=LRCH1 PE...    33   7.1  
tr|B7ZLL5|B7ZLL5_HUMAN Putative uncharacterized protein OS=Homo ...    33   7.1  
tr|B1ALE7|B1ALE7_HUMAN Leucine-rich repeats and calponin homolog...    33   7.1  
tr|A8KA33|A8KA33_HUMAN cDNA FLJ76690, highly similar to Homo sap...    33   7.1  
tr|A8PM61|A8PM61_9COXI Phosphatidate cytidylyltransferase OS=Ric...    33   9.3  
tr|Q93VZ9|Q93VZ9_ORYSJ Putative uncharacterized protein OSJNBa00...    33   9.3  
tr|Q6Q0M8|Q6Q0M8_ORYSJ Os10g0114500 protein OS=Oryza sativa subs...    33   9.3  
tr|A3C1Z9|A3C1Z9_ORYSJ Putative uncharacterized protein OS=Oryza...    33   9.3  

>tr|A9TB32|A9TB32_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_169047 PE=4 SV=1
          Length = 619

 Score = 60.5 bits (145), Expect = 4e-08
 Identities = 25/35 (71%), Positives = 31/35 (88%)
 Frame = +3

Query: 3   GSLRLLDMRNCKGVTALVVSWLKKPYFPRLRWLGL 107
           G+L+LLD+ NC GV++L + WLKKPYFPRLRWLGL
Sbjct: 529 GTLQLLDLWNCDGVSSLSLGWLKKPYFPRLRWLGL 563


>tr|A7R6C9|A7R6C9_VITVI Chromosome undetermined scaffold_1232, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00008099001 PE=4 SV=1
          Length = 637

 Score = 58.9 bits (141), Expect = 1e-07
 Identities = 24/36 (66%), Positives = 29/36 (80%)
 Frame = +3

Query: 6   SLRLLDMRNCKGVTALVVSWLKKPYFPRLRWLGLAG 113
           SLR+LD+ NC G+T+L   WLK PYFPRLRWLG+ G
Sbjct: 530 SLRVLDLYNCGGITSLSFRWLKNPYFPRLRWLGVTG 565


>tr|A7P8I0|A7P8I0_VITVI Chromosome chr3 scaffold_8, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00036187001
           PE=4 SV=1
          Length = 637

 Score = 58.9 bits (141), Expect = 1e-07
 Identities = 24/36 (66%), Positives = 29/36 (80%)
 Frame = +3

Query: 6   SLRLLDMRNCKGVTALVVSWLKKPYFPRLRWLGLAG 113
           SLR+LD+ NC G+T+L   WLK PYFPRLRWLG+ G
Sbjct: 530 SLRVLDLYNCGGITSLSFRWLKNPYFPRLRWLGVTG 565


>tr|Q8H8E1|Q8H8E1_ORYSJ Putative F-box protein OS=Oryza sativa
           subsp. japonica GN=OJ1006F06.4 PE=4 SV=1
          Length = 622

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 23/38 (60%), Positives = 29/38 (76%)
 Frame = +3

Query: 6   SLRLLDMRNCKGVTALVVSWLKKPYFPRLRWLGLAGIL 119
           SL+LLD+ +C  +T L + W KKPYFPRLRWLG+ G L
Sbjct: 520 SLQLLDLYDCGAITPLAIRWFKKPYFPRLRWLGVTGSL 557


>tr|Q10S47|Q10S47_ORYSJ Os03g0135400 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0135400 PE=4 SV=1
          Length = 638

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 23/38 (60%), Positives = 29/38 (76%)
 Frame = +3

Query: 6   SLRLLDMRNCKGVTALVVSWLKKPYFPRLRWLGLAGIL 119
           SL+LLD+ +C  +T L + W KKPYFPRLRWLG+ G L
Sbjct: 536 SLQLLDLYDCGAITPLAIRWFKKPYFPRLRWLGVTGSL 573


>tr|A3ADV3|A3ADV3_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_008975 PE=4 SV=1
          Length = 549

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 23/38 (60%), Positives = 29/38 (76%)
 Frame = +3

Query: 6   SLRLLDMRNCKGVTALVVSWLKKPYFPRLRWLGLAGIL 119
           SL+LLD+ +C  +T L + W KKPYFPRLRWLG+ G L
Sbjct: 447 SLQLLDLYDCGAITPLAIRWFKKPYFPRLRWLGVTGSL 484


>tr|A2XC70|A2XC70_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_09894 PE=4 SV=1
          Length = 622

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 23/38 (60%), Positives = 29/38 (76%)
 Frame = +3

Query: 6   SLRLLDMRNCKGVTALVVSWLKKPYFPRLRWLGLAGIL 119
           SL+LLD+ +C  +T L + W KKPYFPRLRWLG+ G L
Sbjct: 520 SLQLLDLYDCGAITPLAIRWFKKPYFPRLRWLGVTGSL 557


>tr|A9NV99|A9NV99_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 584

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 22/34 (64%), Positives = 27/34 (79%)
 Frame = +3

Query: 6   SLRLLDMRNCKGVTALVVSWLKKPYFPRLRWLGL 107
           +LRLLD+ N  G+T L +SW KKPYF RLRWLG+
Sbjct: 477 TLRLLDIYNSGGITKLAISWFKKPYFSRLRWLGI 510


>tr|Q9ARF5|Q9ARF5_9BRAS Putative uncharacterized protein OS=Capsella
           rubella PE=4 SV=1
          Length = 606

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +3

Query: 9   LRLLDMRNCKGVTALVVSWLKKPYFPRLRWLGL 107
           LR L++ NC  +T   + WL KP F  L WLGL
Sbjct: 528 LRKLNIHNCVSLTTGALRWLSKPSFAGLHWLGL 560


>tr|A7QQF8|A7QQF8_VITVI Chromosome undetermined scaffold_142, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00003340001 PE=4 SV=1
          Length = 603

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = +3

Query: 9   LRLLDMRNCKGVTALVVSWLKKPYFPRLRWLGL 107
           LR LD+ +C G++   +  LK+P+F  L+W+GL
Sbjct: 527 LRKLDLFHCTGLSVKSLESLKRPFFQALKWIGL 559