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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945940
Clone id YMU02A01NGRL0010_P12
Library
Length 565
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_P12. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
CTTTCTGGGCCAGGTCAGACTCTGCATCGCGAGGATGAAGGCGGGCGCCGTTCTACAAAG
CAAGGCGCCATGAATGCTCGGGGCTTGTTGCGTAGTTCAGGACGAGCCCTGTAGCCCTAC
TGTGCAAGGCATCGAATCATCGATTCGTTTTTTGCCGTGCATCCCGAGGATGAAGGCGGC
CTTGATTAACGATGATGCAGAAGGGCTGCAATGTCTGCTTGCTGGGGATGCTCTGTGCGC
ATTGAATGCCTCATGGGAGAGTCCTTTTCAACGCGTACAGCTTTTTGCGCCTACTGTGTT
GCTCACAACCTACTGAGAACTTGCCAATTGGTGCTGCGAACAGTAGTGTGTGCTTGTATA
AGAGGAGGTGGTCGCCTCTTTCTCTCTCCATCTAAGTCTGCCTCTTTGTCTCCTTTTGAA
TGCGTGAGAGCATCTTGAGTGTCACTGTTGATGGCTTGCAACCTGGACAATTGTTGTTCG
TGTGCTGGCAAAGCGGAAGAATTGTGCATCAGCAATGGTGATTCTCTCGGAGCTGAGAGC
ATGGACTTCGAAGGGGGTGAGCTCC
■■Homology search results ■■ -
sp_hit_id Q8CIN9
Definition sp|Q8CIN9|RFFL_RAT E3 ubiquitin-protein ligase rififylin OS=Rattus norvegicus
Align length 65
Score (bit) 31.2
E-value 3.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945940|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_P12, 5'
         (565 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8CIN9|RFFL_RAT E3 ubiquitin-protein ligase rififylin OS=Ratt...    31   3.7  
sp|Q4R2Z8|ZN541_MACFA Zinc finger protein 541 (Fragment) OS=Maca...    27   6.9  
sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680 OS=A...    30   8.3  

>sp|Q8CIN9|RFFL_RAT E3 ubiquitin-protein ligase rififylin OS=Rattus
           norvegicus GN=Rffl PE=1 SV=1
          Length = 362

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 19/65 (29%), Positives = 32/65 (49%)
 Frame = -3

Query: 557 PPSKSMLSAPRESPLLMHNSSALPAHEQQLSRLQAINSDTQDALTHSKGDKEADLDGERK 378
           P  ++ L+ P+ S +    S  LP+   Q++ + A + +TQ A+ H   D E  +  E  
Sbjct: 156 PEQQAFLTQPQSSTV-PPTSPGLPSSPAQVTSVLAQDQETQQAIGHVSQDHEEPIFLEST 214

Query: 377 RRPPP 363
            R PP
Sbjct: 215 ARVPP 219


>sp|Q4R2Z8|ZN541_MACFA Zinc finger protein 541 (Fragment) OS=Macaca
           fascicularis GN=ZNF541 PE=2 SV=2
          Length = 804

 Score = 27.3 bits (59), Expect(2) = 6.9
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -3

Query: 563 SSPPSKSMLSAPRESPLLM-HNSSALPAHEQQLSRLQAINSDTQDALTHSKGDKEADLDG 387
           S P +K  L +   +PL++ H+   +P      S       D ++     +  KE+    
Sbjct: 343 SPPGAKKPLDSTAAAPLVVPHSIPVVPVTRHVGSMAMEQEKDGEE-----RDSKESSQQR 397

Query: 386 ERKRRPPP 363
           +RK+RPPP
Sbjct: 398 KRKKRPPP 405



 Score = 20.4 bits (41), Expect(2) = 6.9
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = -1

Query: 310 GCEQHSRRKKLYALKRTLP*GIQCAQSIP 224
           GC Q   R  ++ + R L    QC+   P
Sbjct: 424 GCHQSRLRSPMFLVDRLLKGLFQCSPYTP 452


>sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680
           OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1
          Length = 390

 Score = 30.0 bits (66), Expect = 8.3
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = -1

Query: 535 QLRE---NHHC*CTILPLCQHTNNNCPGCK 455
           +LRE   NHH  CT +    H N+ CP CK
Sbjct: 350 ELRELPCNHHFHCTCIDKWLHINSRCPLCK 379
tr_hit_id Q4E5A5
Definition tr|Q4E5A5|Q4E5A5_TRYCR Putative uncharacterized protein OS=Trypanosoma cruzi
Align length 66
Score (bit) 38.5
E-value 0.25
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945940|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_P12, 5'
         (565 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4E5A5|Q4E5A5_TRYCR Putative uncharacterized protein OS=Trypa...    39   0.25 
tr|B0CPT8|B0CPT8_LACBS Predicted protein OS=Laccaria bicolor (st...    37   0.57 
tr|A2DSH1|A2DSH1_TRIVA Putative uncharacterized protein OS=Trich...    36   1.7  
tr|Q381C0|Q381C0_9TRYP Putative uncharacterized protein OS=Trypa...    35   2.8  
tr|A6QP32|A6QP32_BOVIN KRT85 protein OS=Bos taurus GN=KRT85 PE=2...    35   2.9  
tr|Q07Q99|Q07Q99_RHOP5 Methyl-accepting chemotaxis sensory trans...    35   3.7  
tr|B0CW92|B0CW92_LACBS Predicted protein OS=Laccaria bicolor (st...    35   3.7  
tr|Q5L175|Q5L175_GEOKA Methyl-accepting chemotaxis protein OS=Ge...    34   4.8  
tr|B6QUH3|B6QUH3_PENMA BZIP transcription factor, putative OS=Pe...    34   4.8  
tr|B7YFF6|B7YFF6_9BACI Methyl-accepting chemotaxis sensory trans...    33   8.2  
tr|B4L7K6|B4L7K6_DROMO GI11188 OS=Drosophila mojavensis GN=GI111...    33   8.2  
tr|A4HBI2|A4HBI2_LEIBR Putative uncharacterized protein OS=Leish...    33   8.2  

>tr|Q4E5A5|Q4E5A5_TRYCR Putative uncharacterized protein
            OS=Trypanosoma cruzi GN=Tc00.1047053506559.250 PE=4 SV=1
          Length = 1559

 Score = 38.5 bits (88), Expect = 0.25
 Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = -3

Query: 557  PPSKSMLSAPRESPLLMHNSSALPAHEQQLSRLQAINS-DTQDALTHSKGDKEADLDGER 381
            PPS S+ S PR SP L  +SS+ PA ++    LQAI++ D+ D     KGD  +    E 
Sbjct: 1179 PPSSSLASPPRSSPSLFSSSSS-PATDKHRRVLQAISTVDSSDVAALEKGDDSSPQAQEE 1237

Query: 380  KRRPPP 363
                 P
Sbjct: 1238 TAEQEP 1243


>tr|B0CPT8|B0CPT8_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_186956 PE=4 SV=1
          Length = 940

 Score = 37.4 bits (85), Expect = 0.57
 Identities = 22/75 (29%), Positives = 36/75 (48%)
 Frame = -3

Query: 470 LSRLQAINSDTQDALTHSKGDKEADLDGERKRRPPPLIQAHTTVRSTNWQVLSRL*ATQ* 291
           L RL   + DT+D  T   G KEA+LD E  +R   L++ + T  S N  ++  L     
Sbjct: 602 LGRLNRKHGDTEDKRTWIHGGKEANLDREATKRKTFLVENNGTASSDNQGIMDSLAGLDM 661

Query: 290 AQKAVRVEKDSPMRH 246
           +  +++    SP  +
Sbjct: 662 SSPSIQAIGSSPQEY 676


>tr|A2DSH1|A2DSH1_TRIVA Putative uncharacterized protein
           OS=Trichomonas vaginalis G3 GN=TVAG_067550 PE=4 SV=1
          Length = 398

 Score = 35.8 bits (81), Expect = 1.7
 Identities = 24/74 (32%), Positives = 36/74 (48%)
 Frame = -3

Query: 557 PPSKSMLSAPRESPLLMHNSSALPAHEQQLSRLQAINSDTQDALTHSKGDKEADLDGERK 378
           P S S  S+PR+S    H SSA P++ + L      N D  D  + S  DK     G  K
Sbjct: 74  PSSNSTPSSPRKSSA-KHRSSARPSNAKPLISDSKDNDDESD--SESSEDKSRPKTGGGK 130

Query: 377 RRPPPLIQAHTTVR 336
           R+P  +++  T ++
Sbjct: 131 RKPKKIVKKTTVIK 144


>tr|Q381C0|Q381C0_9TRYP Putative uncharacterized protein
            OS=Trypanosoma brucei GN=Tb11.01.8390 PE=4 SV=1
          Length = 2135

 Score = 35.0 bits (79), Expect = 2.8
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = -3

Query: 542  MLSAPRESPLLMHNSSALPAHEQQLSRLQAINSDTQDALTHSKGDKEADLDGE 384
            +LS P  SP L+ N   LPA     SRL  ++    +A + + GD E + +GE
Sbjct: 1038 ILSNPASSPQLLLNMCKLPAPAYMGSRLPLLSMPVHNARSDTSGDVEGETNGE 1090


>tr|A6QP32|A6QP32_BOVIN KRT85 protein OS=Bos taurus GN=KRT85 PE=2
           SV=1
          Length = 493

 Score = 35.0 bits (79), Expect = 2.9
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +2

Query: 5   LGQVRLCIARMKAGAV---LQSKAP*MLGACCVVQDEPCSPTVQGIESSIR 148
           +G + +C++R + G +   L S  P  LG   +     CSP+V G  SS+R
Sbjct: 438 VGSINICVSRSQGGVICGDLDSTVPRGLGGTAISSSALCSPSVGGFCSSVR 488


>tr|Q07Q99|Q07Q99_RHOP5 Methyl-accepting chemotaxis sensory
           transducer OS=Rhodopseudomonas palustris (strain BisA53)
           GN=RPE_1941 PE=3 SV=1
          Length = 568

 Score = 34.7 bits (78), Expect = 3.7
 Identities = 15/33 (45%), Positives = 23/33 (69%)
 Frame = -3

Query: 557 PPSKSMLSAPRESPLLMHNSSALPAHEQQLSRL 459
           PP + ++ A  E+ L +HN S LPAH Q+L++L
Sbjct: 63  PPPEYVIEAFLEATLALHNPSNLPAHRQRLAKL 95


>tr|B0CW92|B0CW92_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_322427 PE=4 SV=1
          Length = 194

 Score = 34.7 bits (78), Expect = 3.7
 Identities = 29/92 (31%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
 Frame = -1

Query: 559 HPLRSPCSQLRENHHC*C-TILPLCQHTNNNCPGCKPSTVTLKMLSRIQKETKRQT*MER 383
           +PLR   SQ    HH  C T +        NC GC      L  L R    + RQT +  
Sbjct: 109 NPLRHKASQAPLPHHAMCETSMNRSDRRERNCCGC----ARLLGLPR----SPRQTLVNP 160

Query: 382 ERGDHLLLYKHTLLFAAPIGKFSVGCEQHSRR 287
           E G H+L  +     ++P G  S G   H  R
Sbjct: 161 EEGSHILWRREHYAGSSPFGLTSSGHRTHFTR 192


>tr|Q5L175|Q5L175_GEOKA Methyl-accepting chemotaxis protein
           OS=Geobacillus kaustophilus GN=GK1020 PE=4 SV=1
          Length = 658

 Score = 34.3 bits (77), Expect = 4.8
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = -3

Query: 518 PLLMHNSSALPAHEQQLSRLQAINSDTQDALTHSKGDKEADLDGERKRRPPPLIQAHTTV 339
           P+L         H Q   +  A N+  +  L H KG +E +LDGE++      +   TT+
Sbjct: 200 PVLFDAKGTAVVHPQYKGKNMAKNATVRYMLEHKKGMREYELDGEQR------VMYFTTI 253

Query: 338 RSTNWQV 318
               W+V
Sbjct: 254 PELGWKV 260


>tr|B6QUH3|B6QUH3_PENMA BZIP transcription factor, putative
           OS=Penicillium marneffei ATCC 18224 GN=PMAA_009160 PE=4
           SV=1
          Length = 661

 Score = 34.3 bits (77), Expect = 4.8
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = -3

Query: 509 MHNSSALPAHEQQLSRLQAINSDTQDAL-THSKGDKEADLDGERKRRPPPLIQAHTTVRS 333
           +HN+ ALP  +Q+  ++ A+N++  +AL T  + D   D   +   +P  L QA   +R 
Sbjct: 564 LHNNLALPTKQQENEQVFALNAEQYNALTTFQEDDHNMDFGDKPSGQPSNLQQALAAMRG 623

Query: 332 TN 327
            N
Sbjct: 624 NN 625


>tr|B7YFF6|B7YFF6_9BACI Methyl-accepting chemotaxis sensory
           transducer with Cache sensor OS=Geobacillus sp. Y412MC61
           GN=GYMC61DRAFT_3484 PE=3 SV=1
          Length = 658

 Score = 33.5 bits (75), Expect = 8.2
 Identities = 20/67 (29%), Positives = 28/67 (41%)
 Frame = -3

Query: 518 PLLMHNSSALPAHEQQLSRLQAINSDTQDALTHSKGDKEADLDGERKRRPPPLIQAHTTV 339
           P+L         H Q   +  A N+  +  L H KG  E + DGERK      +   TT+
Sbjct: 200 PVLFDAKGTAVVHPQYKGKNMAKNATVRYMLEHEKGMHEYEQDGERK------VMYFTTI 253

Query: 338 RSTNWQV 318
               W+V
Sbjct: 254 PELGWKV 260