DK945941 |
Clone id |
YMU02A01NGRL0010_P13 |
Library |
YMU02 |
Length |
574 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_P13. 5' end sequence. |
Accession |
DK945941 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL191Contig1 |
Sequence |
TCGGGAGCCATTTTTGCGCACAGGCAGTCGCAGAGAGCTAGGTTTCCATAGTCGCTTAGA GCGGCCAATCCTCAAGGCCTAGCAGCTATGAAGACGATCTTGGCTTCGCAAACCATGGAC ATCCCAGATGGGGTGAAGGTGGAGATCAAGGCCAAGCAGATCCGTGTCACAGGCCCCCGC GGCCAGCTCACCCGCAACTTCAAGCACCTCAACCTCGACCTGCAGATGATCGAAGACGGC AAGAAGCTCAAGGTCGAGGCCTGGTTTGGCTCCCGCAAGACCATGGCTGCCATTCGCACT GCCCTCAGCCATGTGCAGAATCTCATCACCGGTGTCACAAAGGGTTACCGCTACAAAATG CGTTTTGTGTATGCCCACTTTCCGATCAACGCCATTGTCTCCTCTTCCAATAATAACATT GAGATTCGGAACTTCCTGGGTGAGAAGCGGGTGAGGAAGGTGGATATGTTGGAGGGCGTT ACTGTTACGCGAGCGGAGAAGGTTAAGGATGAACTGATCTTAGAAGGCAATGACATTGAG CTTGTTTCACGATCATGTGCCCTGATCAACCAGA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P49210 |
Definition |
sp|P49210|RL9_ORYSJ 60S ribosomal protein L9 OS=Oryza sativa subsp. japonica |
Align length |
162 |
Score (bit) |
239.0 |
E-value |
7.0e-63 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK945941|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0010_P13, 5' (574 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P49210|RL9_ORYSJ 60S ribosomal protein L9 OS=Oryza sativa sub... 239 7e-63 sp|P30707|RL9_PEA 60S ribosomal protein L9 OS=Pisum sativum GN=R... 222 1e-57 sp|P49209|RL91_ARATH 60S ribosomal protein L9-1 OS=Arabidopsis t... 222 1e-57 sp|Q9SZX9|RL92_ARATH 60S ribosomal protein L9-2 OS=Arabidopsis t... 220 4e-57 sp|Q90YW0|RL9_ICTPU 60S ribosomal protein L9 OS=Ictalurus puncta... 170 5e-42 sp|Q963B7|RL9_SPOFR 60S ribosomal protein L9 OS=Spodoptera frugi... 169 7e-42 sp|P51410|RL9_MOUSE 60S ribosomal protein L9 OS=Mus musculus GN=... 167 3e-41 sp|Q5IFJ7|RL9_MACFA 60S ribosomal protein L9 OS=Macaca fascicula... 167 3e-41 sp|Q3SYR7|RL9_BOVIN 60S ribosomal protein L9 OS=Bos taurus GN=RP... 167 3e-41 sp|P17077|RL9_RAT 60S ribosomal protein L9 OS=Rattus norvegicus ... 167 5e-41 sp|P32969|RL9_HUMAN 60S ribosomal protein L9 OS=Homo sapiens GN=... 167 5e-41 sp|Q5R9Q7|RL9_PONAB 60S ribosomal protein L9 OS=Pongo abelii GN=... 164 3e-40 sp|P50882|RL9_DROME 60S ribosomal protein L9 OS=Drosophila melan... 162 9e-40 sp|Q54XI5|RL9_DICDI 60S ribosomal protein L9 OS=Dictyostelium di... 162 9e-40 sp|Q95Y90|RL9_CAEEL 60S ribosomal protein L9 OS=Caenorhabditis e... 146 6e-35 sp|Q10232|RL9A_SCHPO 60S ribosomal protein L9-A OS=Schizosacchar... 142 1e-33 sp|O74905|RL9B_SCHPO 60S ribosomal protein L9-B OS=Schizosacchar... 139 1e-32 sp|P51401|RL9B_YEAST 60S ribosomal protein L9-B OS=Saccharomyces... 137 3e-32 sp|P05738|RL9A_YEAST 60S ribosomal protein L9-A OS=Saccharomyces... 137 4e-32 sp|O02376|RL9_HAECO 60S ribosomal protein L9 (Fragment) OS=Haemo... 125 2e-28 sp|A2BMD5|RL6_HYPBU 50S ribosomal protein L6P OS=Hyperthermus bu... 123 7e-28 sp|A8AC04|RL6_IGNH4 50S ribosomal protein L6P OS=Ignicoccus hosp... 116 9e-26 sp|Q975J6|RL6_SULTO 50S ribosomal protein L6P OS=Sulfolobus toko... 103 5e-22 sp|Q9UX91|RL6_SULSO 50S ribosomal protein L6P OS=Sulfolobus solf... 103 8e-22 sp|A3DNC3|RL6_STAMF 50S ribosomal protein L6P OS=Staphylothermus... 103 8e-22 sp|Q5JJG4|RL6_PYRKO 50S ribosomal protein L6P OS=Pyrococcus koda... 97 8e-20 sp|Q8U015|RL6_PYRFU 50S ribosomal protein L6P OS=Pyrococcus furi... 95 2e-19 sp|Q9V1V1|RL6_PYRAB 50S ribosomal protein L6P OS=Pyrococcus abys... 94 5e-19 sp|A0B9V4|RL6_METTP 50S ribosomal protein L6P OS=Methanosaeta th... 93 8e-19 sp|O59433|RL6_PYRHO 50S ribosomal protein L6P OS=Pyrococcus hori... 92 2e-18
>sp|P49210|RL9_ORYSJ 60S ribosomal protein L9 OS=Oryza sativa subsp. japonica GN=RPL9 PE=2 SV=3 Length = 190
Score = 239 bits (610), Expect = 7e-63 Identities = 117/162 (72%), Positives = 137/162 (84%) Frame = +1
Query: 88 MKTILASQTMDIPDGVKVEIKAKQIRVTGPRGQLTRNFKHLNLDLQMIEDGKKLKVEAWF 267 MKTILAS+TM+IP+GV V++ AK + V GPRG+LTRNFKHLNLD Q++E G+KL+V+AWF Sbjct: 1 MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWF 60
Query: 268 GSRKTMAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPXXXXXXXXXXXXXXXXFLGEK 447 G+R+TMAAIRTA+SHVQNLITGVTKGYRYKMRFVYAHFP FLGEK Sbjct: 61 GTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEK 120
Query: 448 RVRKVDMLEGVTVTRAEKVKDELILEGNDIELVSRSCALINQ 573 +VRKVDMLEGVT+ R+EKVKDEL+L+GNDIELVSRS ALINQ Sbjct: 121 KVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQ 162
>sp|P30707|RL9_PEA 60S ribosomal protein L9 OS=Pisum sativum GN=RPL9 PE=2 SV=1 Length = 193
Score = 222 bits (565), Expect = 1e-57 Identities = 111/165 (67%), Positives = 133/165 (80%), Gaps = 3/165 (1%) Frame = +1
Query: 88 MKTILASQTMDIPDGVKVEIKAKQIRVTGPRGQLTRNFKHLNLDLQMIEDG---KKLKVE 258 MKTIL+S+TM+IPDGV +++ AK I V GPRG+L R+FKHLNLD +I D KKLK++ Sbjct: 1 MKTILSSETMNIPDGVTIKVNAKVIEVEGPRGKLVRDFKHLNLDFDLITDENGKKKLKID 60
Query: 259 AWFGSRKTMAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPXXXXXXXXXXXXXXXXFL 438 AWFGSRKT AAIRTALSHV+NLITGVTKG+RYKMRFVYA FP FL Sbjct: 61 AWFGSRKTSAAIRTALSHVENLITGVTKGFRYKMRFVYADFPINASITNDNKSIEIRNFL 120
Query: 439 GEKRVRKVDMLEGVTVTRAEKVKDELILEGNDIELVSRSCALINQ 573 GEK+VRKVD+L+GV++ R+EKVKDE++L+GNDIELVSRSCALINQ Sbjct: 121 GEKKVRKVDLLDGVSIIRSEKVKDEVVLDGNDIELVSRSCALINQ 165
>sp|P49209|RL91_ARATH 60S ribosomal protein L9-1 OS=Arabidopsis thaliana GN=RPL9B PE=2 SV=3 Length = 194
Score = 222 bits (565), Expect = 1e-57 Identities = 109/166 (65%), Positives = 134/166 (80%), Gaps = 4/166 (2%) Frame = +1
Query: 88 MKTILASQTMDIPDGVKVEIKAKQIRVTGPRGQLTRNFKHLNLDLQMIEDG----KKLKV 255 MKTIL+S+TMDIPD V +++ AK I V GPRG+L R+FKHLNLD Q+I+D KKLK+ Sbjct: 1 MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60
Query: 256 EAWFGSRKTMAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPXXXXXXXXXXXXXXXXF 435 ++WFG+RKT A+IRTALSHV NLI+GVT+G+RYKMRFVYAHFP F Sbjct: 61 DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120
Query: 436 LGEKRVRKVDMLEGVTVTRAEKVKDELILEGNDIELVSRSCALINQ 573 LGEK+VRKV+ML+GVT+ R+EKVKDE++L+GNDIELVSRSCALINQ Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQ 166
>sp|Q9SZX9|RL92_ARATH 60S ribosomal protein L9-2 OS=Arabidopsis thaliana GN=RPL9D PE=2 SV=1 Length = 194
Score = 220 bits (560), Expect = 4e-57 Identities = 111/166 (66%), Positives = 134/166 (80%), Gaps = 4/166 (2%) Frame = +1
Query: 88 MKTILASQTMDIPDGVKVEIKAKQIRVTGPRGQLTRNFKHLNLDLQMIED---GKK-LKV 255 MKTIL+S+TMDIPDGV +++ AK I V GPRG+LTR+FKHLNLD Q+I+D GK+ LK+ Sbjct: 1 MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60
Query: 256 EAWFGSRKTMAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPXXXXXXXXXXXXXXXXF 435 ++WFGSRKT A+IRTALSHV NLI GVT+G+ Y+MRFVYAHFP F Sbjct: 61 DSWFGSRKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNF 120
Query: 436 LGEKRVRKVDMLEGVTVTRAEKVKDELILEGNDIELVSRSCALINQ 573 LGEK+VRKV+ML+GV + R+EKVKDE+ILEGNDIELVSRSCALINQ Sbjct: 121 LGEKKVRKVEMLDGVKIVRSEKVKDEIILEGNDIELVSRSCALINQ 166
>sp|Q90YW0|RL9_ICTPU 60S ribosomal protein L9 OS=Ictalurus punctatus GN=rpl9 PE=2 SV=1 Length = 192
Score = 170 bits (430), Expect = 5e-42 Identities = 87/163 (53%), Positives = 111/163 (68%), Gaps = 1/163 (0%) Frame = +1
Query: 88 MKTILASQTMDIPDGVKVEIKAKQIRVTGPRGQLTRNFKHLNLDLQMI-EDGKKLKVEAW 264 MKTIL++QT+DIPD V V +K + + V GPRG L R F H+NL+L+++ + KKL+V+ W Sbjct: 1 MKTILSTQTVDIPDNVDVTLKGRTVSVKGPRGVLRREFNHINLELRLLGKKQKKLRVDKW 60
Query: 265 FGSRKTMAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPXXXXXXXXXXXXXXXXFLGE 444 +G+RK +A +RT SHVQN+I GVT G+RYKMR VYAHFP FLGE Sbjct: 61 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQETGSLVEIRNFLGE 120
Query: 445 KRVRKVDMLEGVTVTRAEKVKDELILEGNDIELVSRSCALINQ 573 K +R+V M GV + KDEL+LEGNDIELVS S ALI Q Sbjct: 121 KYIRRVRMRPGVNCALSAAQKDELVLEGNDIELVSNSAALIQQ 163
>sp|Q963B7|RL9_SPOFR 60S ribosomal protein L9 OS=Spodoptera frugiperda GN=RpL9 PE=2 SV=1 Length = 190
Score = 169 bits (429), Expect = 7e-42 Identities = 86/162 (53%), Positives = 112/162 (69%) Frame = +1
Query: 88 MKTILASQTMDIPDGVKVEIKAKQIRVTGPRGQLTRNFKHLNLDLQMIEDGKKLKVEAWF 267 MK I+A+Q + IP+G+ V +K++ + V GPRG L RNFKHL +D++M+ + LKVE WF Sbjct: 1 MKQIVANQKVKIPEGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-RVLKVEKWF 59
Query: 268 GSRKTMAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPXXXXXXXXXXXXXXXXFLGEK 447 GS+K +AA+RT SHV+N+I GVTKG++YKMR VYAHFP FLGEK Sbjct: 60 GSKKELAAVRTVCSHVENMIKGVTKGFQYKMRSVYAHFPINCVTTEGNSVIEIRNFLGEK 119
Query: 448 RVRKVDMLEGVTVTRAEKVKDELILEGNDIELVSRSCALINQ 573 +R+V M GVTV + K KDELI+EGN +E VS S ALI Q Sbjct: 120 YIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQ 161
>sp|P51410|RL9_MOUSE 60S ribosomal protein L9 OS=Mus musculus GN=Rpl9 PE=2 SV=2 Length = 192
Score = 167 bits (424), Expect = 3e-41 Identities = 85/163 (52%), Positives = 113/163 (69%), Gaps = 1/163 (0%) Frame = +1
Query: 88 MKTILASQTMDIPDGVKVEIKAKQIRVTGPRGQLTRNFKHLNLDLQMIEDGKK-LKVEAW 264 MKTIL++QT+DIP+ V++ +K + + V GPRG L R+F H+N++L ++ KK L+V+ W Sbjct: 1 MKTILSNQTVDIPENVEITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60
Query: 265 FGSRKTMAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPXXXXXXXXXXXXXXXXFLGE 444 +G+RK +A +RT SHVQN+I GVT G+RYKMR VYAHFP FLGE Sbjct: 61 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 120
Query: 445 KRVRKVDMLEGVTVTRAEKVKDELILEGNDIELVSRSCALINQ 573 K +R+V M GV + ++ KDELILEGNDIELVS S ALI Q Sbjct: 121 KYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQ 163
>sp|Q5IFJ7|RL9_MACFA 60S ribosomal protein L9 OS=Macaca fascicularis GN=RPL9 PE=2 SV=1 Length = 192
Score = 167 bits (423), Expect = 3e-41 Identities = 86/163 (52%), Positives = 112/163 (68%), Gaps = 1/163 (0%) Frame = +1
Query: 88 MKTILASQTMDIPDGVKVEIKAKQIRVTGPRGQLTRNFKHLNLDLQMIEDGKK-LKVEAW 264 MKTIL++QT+DIP+ V + +K + + V GPRG L R+F H+N++L ++ KK L+V+ W Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60
Query: 265 FGSRKTMAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPXXXXXXXXXXXXXXXXFLGE 444 +G+RK +A IRT SHVQN+I GVT G+RYKMR VYAHFP FLGE Sbjct: 61 WGNRKELATIRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 120
Query: 445 KRVRKVDMLEGVTVTRAEKVKDELILEGNDIELVSRSCALINQ 573 K +R+V M GV + ++ KDELILEGNDIELVS S ALI Q Sbjct: 121 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQ 163
>sp|Q3SYR7|RL9_BOVIN 60S ribosomal protein L9 OS=Bos taurus GN=RPL9 PE=2 SV=1 Length = 192
Score = 167 bits (423), Expect = 3e-41 Identities = 85/163 (52%), Positives = 112/163 (68%), Gaps = 1/163 (0%) Frame = +1
Query: 88 MKTILASQTMDIPDGVKVEIKAKQIRVTGPRGQLTRNFKHLNLDLQMIEDGKK-LKVEAW 264 MKTIL++QT+DIP+ V + +K + + V GPRG L R+F H+N++L ++ KK L+V+ W Sbjct: 1 MKTILSNQTVDIPENVDINLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60
Query: 265 FGSRKTMAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPXXXXXXXXXXXXXXXXFLGE 444 +G+RK +A +RT SHVQN+I GVT G+RYKMR VYAHFP FLGE Sbjct: 61 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 120
Query: 445 KRVRKVDMLEGVTVTRAEKVKDELILEGNDIELVSRSCALINQ 573 K +R+V M GV + ++ KDELILEGNDIELVS S ALI Q Sbjct: 121 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQ 163
>sp|P17077|RL9_RAT 60S ribosomal protein L9 OS=Rattus norvegicus GN=Rpl9 PE=1 SV=1 Length = 192
Score = 167 bits (422), Expect = 5e-41 Identities = 85/163 (52%), Positives = 112/163 (68%), Gaps = 1/163 (0%) Frame = +1
Query: 88 MKTILASQTMDIPDGVKVEIKAKQIRVTGPRGQLTRNFKHLNLDLQMIEDGKK-LKVEAW 264 MKTIL++QT+DIP+ V + +K + + V GPRG L R+F H+N++L ++ KK L+V+ W Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60
Query: 265 FGSRKTMAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPXXXXXXXXXXXXXXXXFLGE 444 +G+RK +A +RT SHVQN+I GVT G+RYKMR VYAHFP FLGE Sbjct: 61 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 120
Query: 445 KRVRKVDMLEGVTVTRAEKVKDELILEGNDIELVSRSCALINQ 573 K +R+V M GV + ++ KDELILEGNDIELVS S ALI Q Sbjct: 121 KYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQ 163
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9T4Q4 |
Definition |
tr|A9T4Q4|A9T4Q4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
162 |
Score (bit) |
253.0 |
E-value |
4.0e-66 |
Report |
|