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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945958
Clone id YMU02A01NGRL0011_A06
Library
Length 514
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0011_A06. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TGACAGTGAAAAGGAACACCAAGCTGAGAGAGAAGGAAGCCGACTGCGACTGCTCAAGTA
TACAGGGTAATGTCTCAAGTATACATGCGTCGAAATCCCCCTATATTTCCCCTGAGAAAG
AGAACTTTGAGAAACCAGAGCTTAGTGACCTTGGAAGTCTAGATGTTGCAGAAGAGAGCA
AGCGCATCCACCCACGCTGTGGCTCTCAAGATTGTCACGAGCGGGAATCAAAGAGGCCTT
GTTCTGGTTTAGTGACTTGAGTGTATCTCTGAATGTTGTAGTTTCTGGGATTGAATTCCT
ATTGCAAGTGTAACTTGGGATCATGATTCGGTTTCCGGACTTGCACGGTGAGACCTGCTG
TCTGTTTAAGGAGTCCTTGAATTGCTTGAAATGGAGTGTTCAGCTAGCTTGCTATTGGAT
GCTCTGACAGCAGTTTTTGAGGCCCCGAAAGGTGGGGATGCTATGAGAAACTCAGCAAAT
GGGTTGGGAAAAGTGCCGCTACGATATTCTATGC
■■Homology search results ■■ -
sp_hit_id Q8K4I3
Definition sp|Q8K4I3|ARHG6_MOUSE Rho guanine nucleotide exchange factor 6 OS=Mus musculus
Align length 62
Score (bit) 33.1
E-value 0.79
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945958|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_A06, 5'
         (514 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8K4I3|ARHG6_MOUSE Rho guanine nucleotide exchange factor 6 O...    33   0.79 
sp|Q5XXR3|ARHG6_RAT Rho guanine nucleotide exchange factor 6 OS=...    32   1.3  
sp|Q5BCL0|MED8_EMENI Mediator of RNA polymerase II transcription...    32   2.3  
sp|Q03U06|UXUA_LACBA Mannonate dehydratase OS=Lactobacillus brev...    30   5.0  
sp|Q6DFT3|PP4R3_XENTR Serine/threonine-protein phosphatase 4 reg...    30   6.5  
sp|Q52L34|MTHSD_XENLA Methenyltetrahydrofolate synthetase domain...    30   8.5  
sp|Q5A950|ATG26_CANAL Sterol 3-beta-glucosyltransferase OS=Candi...    30   8.7  

>sp|Q8K4I3|ARHG6_MOUSE Rho guanine nucleotide exchange factor 6
           OS=Mus musculus GN=Arhgef6 PE=1 SV=1
          Length = 771

 Score = 33.1 bits (74), Expect = 0.79
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = -2

Query: 348 PCKSGNRIMIPSYTCNRNSIPETTTFRDTLKSLNQNKASLIPARDNLESHSVGGCACSLL 169
           P +S N +    +TC   +  E  TF+ TL    + + S  P       H VGGC  +L+
Sbjct: 269 PLQSNNNLSTVEFTCLLGNFEEVCTFQQTLCQALE-ECSKFPE----NQHKVGGCLLNLM 323

Query: 168 QH 163
            H
Sbjct: 324 PH 325


>sp|Q5XXR3|ARHG6_RAT Rho guanine nucleotide exchange factor 6
           OS=Rattus norvegicus GN=Arhgef6 PE=1 SV=1
          Length = 772

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = -2

Query: 348 PCKSGNRIMIPSYTCNRNSIPETTTFRDTLKSLNQNKASLIPARDNLESHSVGGCACSLL 169
           P +S N +    +TC   +  E  TF+ TL    + + S  P       H VGGC  +L+
Sbjct: 270 PLQSNNNLSTVEFTCLLGNFEEVCTFQQTLCQALE-ECSKSPE----NQHKVGGCLLNLM 324

Query: 168 QH 163
            H
Sbjct: 325 PH 326


>sp|Q5BCL0|MED8_EMENI Mediator of RNA polymerase II transcription
           subunit 8 OS=Emericella nidulans GN=med8 PE=3 SV=1
          Length = 260

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 23/71 (32%), Positives = 34/71 (47%)
 Frame = -2

Query: 282 TTTFRDTLKSLNQNKASLIPARDNLESHSVGGCACSLLQHLDFQGH*ALVSQSSLSQGKY 103
           TT   D LK+L Q++  LI       +HS+G    SL Q        +L +Q+S+     
Sbjct: 2   TTLSPDHLKTLEQSRQRLIQL-----THSLGSLITSLNQSDPLPTWSSLQTQASIISNNL 56

Query: 102 RGISTHVYLRH 70
           + ISTH+   H
Sbjct: 57  QSISTHLSENH 67


>sp|Q03U06|UXUA_LACBA Mannonate dehydratase OS=Lactobacillus brevis
           (strain ATCC 367 / JCM 1170) GN=uxuA PE=3 SV=1
          Length = 356

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
 Frame = +3

Query: 63  QGNVSSIHASKSPYISPEKENFEKPELSDLGSLDVAEESKRIH---------PRCGSQDC 215
           QG V  +HA    ++S + +  E   LS +GSLD+    + +H         P  G    
Sbjct: 266 QGRVPFVHARNIKFMSDQGDFHESAHLSSMGSLDMFAIMQALHETGFSGVIRPDHGRDIW 325

Query: 216 HERESKRPCSGL 251
           H  ES RP  GL
Sbjct: 326 H--ESGRPGYGL 335


>sp|Q6DFT3|PP4R3_XENTR Serine/threonine-protein phosphatase 4
           regulatory subunit 3 OS=Xenopus tropicalis GN=smek2 PE=2
           SV=1
          Length = 820

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
 Frame = +3

Query: 30  EKEADCD-----CSSIQGNVSSIHASKSPYISPEKENFEK-PELSDLGSLDVAEESK 182
           +++A CD        +QG   S+  ++ P    E+E FE+ PE S+L  L   E SK
Sbjct: 85  QEKAGCDEIWEKICQVQGKDPSVEVTQDPIDESEEERFEEMPETSNLIDLPTCELSK 141


>sp|Q52L34|MTHSD_XENLA Methenyltetrahydrofolate synthetase
           domain-containing protein OS=Xenopus laevis GN=mthfsd
           PE=2 SV=1
          Length = 415

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +3

Query: 6   VKRNTKLREKEADCDCSSIQGNVSSIHASKSPYISPEKE 122
           + RN + RE+ A  D S   GN S   + +SP   PEKE
Sbjct: 241 ILRNLQDRERRAGKDVSLKDGNASEQGSRQSPLCLPEKE 279


>sp|Q5A950|ATG26_CANAL Sterol 3-beta-glucosyltransferase OS=Candida
           albicans GN=ATG26 PE=3 SV=1
          Length = 1513

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -2

Query: 378 KDSLNRQQVSPCKSGNRIMIPSYTCNRNSIPETTTFRDTLKSLNQ--NKASLIPARDNLE 205
           K+ LNR+ +SP   G     P+   +  + P  +T  +T   LN   +  S  P  DN+E
Sbjct: 424 KEKLNREAISPVNRGT--YSPNGGLSGTATPRASTLENTASELNSMLSGDSYSPTEDNVE 481

Query: 204 S 202
           +
Sbjct: 482 T 482
tr_hit_id A5K0N8
Definition tr|A5K0N8|A5K0N8_PLAVI Putative uncharacterized protein OS=Plasmodium vivax
Align length 63
Score (bit) 34.7
E-value 2.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945958|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_A06, 5'
         (514 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5K0N8|A5K0N8_PLAVI Putative uncharacterized protein OS=Plasm...    35   2.8  
tr|A2AFJ8|A2AFJ8_MOUSE Rac/Cdc42 guanine nucleotide exchange fac...    33   8.3  
tr|A2AFI0|A2AFI0_MOUSE Rac/Cdc42 guanine nucleotide exchange fac...    33   8.3  

>tr|A5K0N8|A5K0N8_PLAVI Putative uncharacterized protein OS=Plasmodium
            vivax GN=PVX_084725 PE=4 SV=1
          Length = 2668

 Score = 34.7 bits (78), Expect = 2.8
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
 Frame = +3

Query: 66   GNVSSIHAS-KSPYISPEK---ENFE-KPELSDLGSLDVAEESKRIHP--RCGSQDCHER 224
            GNV S+H S K+   +P +   E +E KP+  D   L + + SK+IHP   C     H R
Sbjct: 1915 GNVQSVHQSDKAEESNPNEYPLERYEAKPKGEDHTQLGMNKRSKQIHPFNNCNEMKLHSR 1974

Query: 225  ESK 233
            E K
Sbjct: 1975 EQK 1977


>tr|A2AFJ8|A2AFJ8_MOUSE Rac/Cdc42 guanine nucleotide exchange factor
           (GEF) 6 OS=Mus musculus GN=Arhgef6 PE=4 SV=1
          Length = 483

 Score = 33.1 bits (74), Expect = 8.3
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = -2

Query: 348 PCKSGNRIMIPSYTCNRNSIPETTTFRDTLKSLNQNKASLIPARDNLESHSVGGCACSLL 169
           P +S N +    +TC   +  E  TF+ TL    + + S  P       H VGGC  +L+
Sbjct: 30  PLQSNNNLSTVEFTCLLGNFEEVCTFQQTLCQALE-ECSKFPE----NQHKVGGCLLNLM 84

Query: 168 QH 163
            H
Sbjct: 85  PH 86


>tr|A2AFI0|A2AFI0_MOUSE Rac/Cdc42 guanine nucleotide exchange factor
           (GEF) 6 OS=Mus musculus GN=Arhgef6 PE=4 SV=1
          Length = 788

 Score = 33.1 bits (74), Expect = 8.3
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = -2

Query: 348 PCKSGNRIMIPSYTCNRNSIPETTTFRDTLKSLNQNKASLIPARDNLESHSVGGCACSLL 169
           P +S N +    +TC   +  E  TF+ TL    + + S  P       H VGGC  +L+
Sbjct: 293 PLQSNNNLSTVEFTCLLGNFEEVCTFQQTLCQALE-ECSKFPE----NQHKVGGCLLNLM 347

Query: 168 QH 163
            H
Sbjct: 348 PH 349