DK945960 |
Clone id |
YMU02A01NGRL0011_A08 |
Library |
YMU02 |
Length |
486 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0011_A08. 5' end sequence. |
Accession |
DK945960 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL2032Contig1 |
Sequence |
GCAAGGGCAGGGGATTTCAATAGAGTAAAGTCCATGTTAGCAGTGATGCCAGTGGAGGCT GATGAGACAGCCTGGCTATCCTTGCTTGGTGCTTGTCAGACACATTGCAATGTGGATCTG GCTAAATTGGCATTTGAGTTTGCATCGAAGATTCAGCCCAAGCATGCTGCTGCTTATGTT GTATTGTCAAATGTGTATGCCTATGCTGGGTTTGAAGATGATGGGGAAGAGGTGGACAGC CCGCCATATAGCATGGATTGAGAATGTGGTAGAACTGTCAAGAATTTTGCAGCTAGATTT TAGTTACCTAGTCTTACTTCTAGATGTATACAAAGCAAGGTACACAATTTGTGGCCTATC AAAATCAAGGCCTTAGCATCATCTTACCTTTTGGCTTCGTCCAAATTATGGATTAATTTT TTCATTCGACAATTTTTTTCCTATCGGTGATACCCCTTAAAAAAAAAAAAAAAAAAAAAA AAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O23169 |
Definition |
sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana |
Align length |
77 |
Score (bit) |
68.9 |
E-value |
1.0e-11 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7PFU2 |
Definition |
tr|A7PFU2|A7PFU2_VITVI Chromosome chr6 scaffold_15, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
78 |
Score (bit) |
70.5 |
E-value |
4.0e-11 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK945960|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0011_A08, 5' (458 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7PFU2|A7PFU2_VITVI Chromosome chr6 scaffold_15, whole genome... 70 4e-11 tr|A5AGR4|A5AGR4_VITVI Putative uncharacterized protein OS=Vitis... 70 4e-11 tr|Q10PG4|Q10PG4_ORYSJ Os03g0235200 protein OS=Oryza sativa subs... 70 7e-11 tr|B8AJP0|B8AJP0_ORYSI Putative uncharacterized protein OS=Oryza... 70 7e-11 tr|A7PRL5|A7PRL5_VITVI Chromosome chr14 scaffold_27, whole genom... 70 7e-11 tr|A7P390|A7P390_VITVI Chromosome chr1 scaffold_5, whole genome ... 70 7e-11 tr|A5BCC4|A5BCC4_VITVI Putative uncharacterized protein OS=Vitis... 70 7e-11 tr|Q5W965|Q5W965_PHYPA PPR868-14 OS=Physcomitrella patens PE=2 SV=1 69 2e-10 tr|A9SDQ1|A9SDQ1_PHYPA Predicted protein OS=Physcomitrella paten... 69 2e-10 tr|B4FXU5|B4FXU5_MAIZE Putative uncharacterized protein OS=Zea m... 67 3e-10 tr|A7R678|A7R678_VITVI Chromosome undetermined scaffold_1179, wh... 67 3e-10 tr|A5BL66|A5BL66_VITVI Putative uncharacterized protein OS=Vitis... 67 3e-10 tr|A9P0W0|A9P0W0_PICSI Putative uncharacterized protein OS=Picea... 67 4e-10 tr|B8LLJ0|B8LLJ0_PICSI Putative uncharacterized protein OS=Picea... 66 8e-10 tr|A7R0D7|A7R0D7_VITVI Chromosome chr6 scaffold_305, whole genom... 66 8e-10 tr|A7PIZ1|A7PIZ1_VITVI Chromosome chr13 scaffold_17, whole genom... 66 8e-10 tr|A5ADX7|A5ADX7_VITVI Putative uncharacterized protein OS=Vitis... 66 8e-10 tr|A7P8H1|A7P8H1_VITVI Chromosome chr3 scaffold_8, whole genome ... 66 1e-09 tr|A7P2H4|A7P2H4_VITVI Chromosome chr1 scaffold_5, whole genome ... 66 1e-09 tr|A5BGC7|A5BGC7_VITVI Putative uncharacterized protein OS=Vitis... 66 1e-09 tr|Q8H8N2|Q8H8N2_ORYSJ Os03g0775400 protein OS=Oryza sativa subs... 65 1e-09 tr|A9TDA2|A9TDA2_PHYPA Predicted protein OS=Physcomitrella paten... 65 1e-09 tr|A7NSY3|A7NSY3_VITVI Chromosome chr18 scaffold_1, whole genome... 65 1e-09 tr|A3AN62|A3AN62_ORYSJ Putative uncharacterized protein OS=Oryza... 65 1e-09 tr|A2XMF9|A2XMF9_ORYSI Putative uncharacterized protein OS=Oryza... 65 1e-09 tr|B8BMF2|B8BMF2_ORYSI Putative uncharacterized protein OS=Oryza... 65 2e-09 tr|Q7F2F8|Q7F2F8_ORYSJ P0402A09.8 protein (P0455C04.2 protein) O... 65 2e-09 tr|Q655L5|Q655L5_ORYSJ Putative uncharacterized protein P0672D08... 65 2e-09 tr|B8ACR8|B8ACR8_ORYSI Putative uncharacterized protein OS=Oryza... 65 2e-09 tr|A7PPC3|A7PPC3_VITVI Chromosome chr8 scaffold_23, whole genome... 65 2e-09
>tr|A7PFU2|A7PFU2_VITVI Chromosome chr6 scaffold_15, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00017247001 PE=4 SV=1 Length = 868
Score = 70.5 bits (171), Expect = 4e-11 Identities = 30/78 (38%), Positives = 49/78 (62%) Frame = +1
Query: 1 ARAGDFNRVKSMLAVMPVEADETAWLSLLGACQTHCNVDLAKLAFEFASKIQPKHAAAYV 180 +RAG FN + MP E + W SLLGAC+ HCN DLA+ A + +++P+ + YV Sbjct: 644 SRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYV 703
Query: 181 VLSNVYAYAGFEDDGEEV 234 +++N+Y+ AG +D ++ Sbjct: 704 LMANIYSAAGRWEDAAKI 721
>tr|A5AGR4|A5AGR4_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016435 PE=4 SV=1 Length = 929
Score = 70.5 bits (171), Expect = 4e-11 Identities = 30/78 (38%), Positives = 49/78 (62%) Frame = +1
Query: 1 ARAGDFNRVKSMLAVMPVEADETAWLSLLGACQTHCNVDLAKLAFEFASKIQPKHAAAYV 180 +RAG FN + MP E + W SLLGAC+ HCN DLA+ A + +++P+ + YV Sbjct: 748 SRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYV 807
Query: 181 VLSNVYAYAGFEDDGEEV 234 +++N+Y+ AG +D ++ Sbjct: 808 LMANIYSAAGRWEDAAKI 825
>tr|Q10PG4|Q10PG4_ORYSJ Os03g0235200 protein OS=Oryza sativa subsp. japonica GN=Os03g0235200 PE=2 SV=1 Length = 641
Score = 69.7 bits (169), Expect = 7e-11 Identities = 33/78 (42%), Positives = 50/78 (64%) Frame = +1
Query: 1 ARAGDFNRVKSMLAVMPVEADETAWLSLLGACQTHCNVDLAKLAFEFASKIQPKHAAAYV 180 +R+G F R + M+ M V+ ++ W SLLG C+ H NV LA+ A E +I+P++ A YV Sbjct: 417 SRSGQFERAEKMIGNMAVKPNKFLWASLLGGCRIHKNVGLARRAAEALFEIEPENPATYV 476
Query: 181 VLSNVYAYAGFEDDGEEV 234 L+N+YA G D+ E+V Sbjct: 477 TLANIYASVGLFDEVEDV 494
>tr|B8AJP0|B8AJP0_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_10663 PE=4 SV=1 Length = 703
Score = 69.7 bits (169), Expect = 7e-11 Identities = 33/78 (42%), Positives = 50/78 (64%) Frame = +1
Query: 1 ARAGDFNRVKSMLAVMPVEADETAWLSLLGACQTHCNVDLAKLAFEFASKIQPKHAAAYV 180 +R+G F R + M+ M V+ ++ W SLLG C+ H NV LA+ A E +I+P++ A YV Sbjct: 417 SRSGQFERAEKMIGNMAVKPNKFLWASLLGGCRIHKNVGLARRAAEALFEIEPENPATYV 476
Query: 181 VLSNVYAYAGFEDDGEEV 234 L+N+YA G D+ E+V Sbjct: 477 TLANIYASVGLFDEVEDV 494
>tr|A7PRL5|A7PRL5_VITVI Chromosome chr14 scaffold_27, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00022551001 PE=4 SV=1 Length = 673
Score = 69.7 bits (169), Expect = 7e-11 Identities = 34/77 (44%), Positives = 51/77 (66%) Frame = +1
Query: 4 RAGDFNRVKSMLAVMPVEADETAWLSLLGACQTHCNVDLAKLAFEFASKIQPKHAAAYVV 183 RAG N ++ MPVEAD W +LLGAC+TH N++LA++A + +++PK+A Y++ Sbjct: 449 RAGLVNDAMDLIQKMPVEADAIIWGALLGACRTHMNMNLAEVAAKKLLQLEPKNAGPYIL 508
Query: 184 LSNVYAYAGFEDDGEEV 234 LSN+YA G D E+ Sbjct: 509 LSNIYASKGRWGDVAEL 525
>tr|A7P390|A7P390_VITVI Chromosome chr1 scaffold_5, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00030349001 PE=4 SV=1 Length = 585
Score = 69.7 bits (169), Expect = 7e-11 Identities = 34/74 (45%), Positives = 49/74 (66%) Frame = +1
Query: 1 ARAGDFNRVKSMLAVMPVEADETAWLSLLGACQTHCNVDLAKLAFEFASKIQPKHAAAYV 180 ARAG + + + MPVEAD W LLGAC+ + NV+LA+LA + +++PK+ A YV Sbjct: 441 ARAGRLEQAMAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIELEPKNPANYV 500
Query: 181 VLSNVYAYAGFEDD 222 +LSN+Y AG +D Sbjct: 501 MLSNIYGDAGRWED 514
>tr|A5BCC4|A5BCC4_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030746 PE=4 SV=1 Length = 686
Score = 69.7 bits (169), Expect = 7e-11 Identities = 34/74 (45%), Positives = 49/74 (66%) Frame = +1
Query: 1 ARAGDFNRVKSMLAVMPVEADETAWLSLLGACQTHCNVDLAKLAFEFASKIQPKHAAAYV 180 ARAG + + + MPVEAD W LLGAC+ + NV+LA+LA + +++PK+ A YV Sbjct: 542 ARAGRLEQAXAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIELEPKNPANYV 601
Query: 181 VLSNVYAYAGFEDD 222 +LSN+Y AG +D Sbjct: 602 MLSNIYGDAGRWED 615
>tr|Q5W965|Q5W965_PHYPA PPR868-14 OS=Physcomitrella patens PE=2 SV=1 Length = 868
Score = 68.6 bits (166), Expect = 2e-10 Identities = 32/77 (41%), Positives = 47/77 (61%) Frame = +1
Query: 4 RAGDFNRVKSMLAVMPVEADETAWLSLLGACQTHCNVDLAKLAFEFASKIQPKHAAAYVV 183 RAG + + MP E D + W +LLGAC++H NV LA+ A +++P +A+ Y+ Sbjct: 645 RAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLAERAAHHILELEPSYASVYIT 704
Query: 184 LSNVYAYAGFEDDGEEV 234 LSN+YA AG DD +V Sbjct: 705 LSNIYAQAGRWDDSTKV 721
>tr|A9SDQ1|A9SDQ1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_211228 PE=4 SV=1 Length = 868
Score = 68.6 bits (166), Expect = 2e-10 Identities = 32/77 (41%), Positives = 47/77 (61%) Frame = +1
Query: 4 RAGDFNRVKSMLAVMPVEADETAWLSLLGACQTHCNVDLAKLAFEFASKIQPKHAAAYVV 183 RAG + + MP E D + W +LLGAC++H NV LA+ A +++P +A+ Y+ Sbjct: 645 RAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLAERAAHHILELEPSYASVYIT 704
Query: 184 LSNVYAYAGFEDDGEEV 234 LSN+YA AG DD +V Sbjct: 705 LSNIYAQAGRWDDSTKV 721
>tr|B4FXU5|B4FXU5_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 635
Score = 67.4 bits (163), Expect = 3e-10 Identities = 33/78 (42%), Positives = 49/78 (62%) Frame = +1
Query: 1 ARAGDFNRVKSMLAVMPVEADETAWLSLLGACQTHCNVDLAKLAFEFASKIQPKHAAAYV 180 +R+G F R + M+ MPV+ ++ W SLLG C+ H NV LA A E +I+P++ A YV Sbjct: 411 SRSGLFERAEDMINTMPVKPNKFLWASLLGGCRIHKNVRLAWWAAEALFEIEPENPATYV 470
Query: 181 VLSNVYAYAGFEDDGEEV 234 L+N+YA G D+ E + Sbjct: 471 TLANIYASVGLFDEVENM 488
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