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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945973
Clone id YMU02A01NGRL0011_A22
Library
Length 516
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0011_A22. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GATCGAGGTCGCCATGGCTGTTGCAACCGTTGCAACCTCCTCTCTCCACCTCGCTTGCTC
CTCAAGCGCCGCGGGAGAGTCCAAGGTTCTATCCCGCCGTGGTCCCTGCTTGCTAGCTCC
CGCTCCTGGCCGGGCTTCTCCTCTCAAGCTCGTCTCCAATGGCAGCCGCGTCTCTATGAG
TGGGGATGGAAAGAAAGAGATCAGCCTTGTGGCACCGGCGGCCCTCGCTGTACTTGCTGC
AGCAGTTATTCCAGATATGGCTGAGGCTGTTGCTCCTGGAGTATCACCCTCGCTGAAAAA
CCTTCTGCTTAGTGTTGTACCAGGAGGTGTTGTCCTTGTTGCCATTGGAGGTGCCGTTGC
TGCTGTCTCGACCTTTAACCCTGTCAAGCCGAAGTGATTCTGCTAGTTGTGAGTAAACAC
CATATGATGGCATAATTTTTCAATGGAATTGAAATGAAATCCCCCTTTTTGAAAATTGAA
AAATTATTTGGTCCAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P40070
Definition sp|P40070|LSM4_YEAST U6 snRNA-associated Sm-like protein LSm4 OS=Saccharomyces cerevisiae
Align length 64
Score (bit) 30.0
E-value 6.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945973|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_A22, 5'
         (494 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P40070|LSM4_YEAST U6 snRNA-associated Sm-like protein LSm4 OS...    30   6.0  

>sp|P40070|LSM4_YEAST U6 snRNA-associated Sm-like protein LSm4
           OS=Saccharomyces cerevisiae GN=LSM4 PE=1 SV=1
          Length = 187

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
 Frame = -2

Query: 388 LDRVKGRDSSNGTSNGN-KDNTSWYNTKQKVFQRG*YSRSNSLSHIWNNCCSKYSEGRRC 212
           +D+VK + +SN  SN N   +  +YN +     RG Y+R N  ++  N+    YS+ R+ 
Sbjct: 86  IDKVKQQINSNNNSNSNGPGHKRYYNNRDSNNNRGNYNRRN--NNNGNSNRRPYSQNRQY 143

Query: 211 HKAD 200
           + ++
Sbjct: 144 NNSN 147
tr_hit_id A9STC1
Definition tr|A9STC1|A9STC1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 106
Score (bit) 48.1
E-value 0.0002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945973|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_A22, 5'
         (494 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9STC1|A9STC1_PHYPA Predicted protein OS=Physcomitrella paten...    48   2e-04
tr|A9TK82|A9TK82_PHYPA Predicted protein OS=Physcomitrella paten...    47   5e-04
tr|A9TSL8|A9TSL8_PHYPA Predicted protein OS=Physcomitrella paten...    46   8e-04
tr|A9NTS2|A9NTS2_PICSI Putative uncharacterized protein OS=Picea...    45   0.002
tr|A9RVW4|A9RVW4_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.003
tr|A9NK10|A9NK10_PICSI Putative uncharacterized protein OS=Picea...    41   0.035
tr|Q4DT25|Q4DT25_TRYCR Putative uncharacterized protein OS=Trypa...    35   2.5  
tr|A3MVN7|A3MVN7_PYRCJ Putative uncharacterized protein OS=Pyrob...    35   2.5  
tr|B4JTF3|B4JTF3_DROGR GH23839 OS=Drosophila grimshawi GN=GH2383...    34   3.3  
tr|A5BCY2|A5BCY2_VITVI Putative uncharacterized protein OS=Vitis...    33   5.6  
tr|Q86K33|Q86K33_DICDI Putative uncharacterized protein OS=Dicty...    33   5.6  
tr|Q54ZU4|Q54ZU4_DICDI RmlC-like cupin family protein OS=Dictyos...    33   5.6  
tr|Q8S5F5|Q8S5F5_ORYSA Putative uncharacterized protein OSJNBb00...    33   9.5  

>tr|A9STC1|A9STC1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_166457 PE=4 SV=1
          Length = 238

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 39/106 (36%), Positives = 47/106 (44%)
 Frame = +2

Query: 77  ESKVLSRRGPCLLAPAPGRASPLKLVSNGSRVSMSGDGKKEISXXXXXXXXXXXXXXIPD 256
           E K LSR+G  L AP   RAS  ++V N SRV MS     +                +P+
Sbjct: 138 EGKTLSRQGLALAAPP--RAS--RMVVNRSRVVMSAT-PSDNKVVSLTSLALLAAAVVPE 192

Query: 257 MAEAVAPGVSPSLKNXXXXXXXXXXXXXXXXXXXXXXSTFNPVKPK 394
           +AEA  PGVSPSLKN                      STF+PVK K
Sbjct: 193 IAEAAQPGVSPSLKNLLLSVVAGGTVLTVIGVAVAGVSTFDPVKRK 238


>tr|A9TK82|A9TK82_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_170551 PE=4 SV=1
          Length = 126

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 35/106 (33%), Positives = 48/106 (45%)
 Frame = +2

Query: 77  ESKVLSRRGPCLLAPAPGRASPLKLVSNGSRVSMSGDGKKEISXXXXXXXXXXXXXXIPD 256
           E K LSR+G  L A +P R +  ++  N SRV MS    ++ +              +P+
Sbjct: 23  EGKTLSRQGLSLAAASPLRMAG-QVAMNRSRVVMSA-APQDKNVAGLTSLALLAAAVVPE 80

Query: 257 MAEAVAPGVSPSLKNXXXXXXXXXXXXXXXXXXXXXXSTFNPVKPK 394
           +AEA  PG+SPSLKN                      STF+PVK K
Sbjct: 81  IAEAAQPGISPSLKNLLLSVVAGGTVLTVIGVAVAGVSTFDPVKRK 126


>tr|A9TSL8|A9TSL8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_171698 PE=4 SV=1
          Length = 140

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 39/122 (31%), Positives = 52/122 (42%), Gaps = 16/122 (13%)
 Frame = +2

Query: 77  ESKVLSRRGPCLLAPAPGRASPLKLVSNGSRVSMSGD----------------GKKEISX 208
           E+K+LSR+G  L AP+  R+S  KL++N SRV MS                   + +   
Sbjct: 22  EAKILSRQGLALAAPSV-RSS--KLIANRSRVVMSNSLSSAAAEIVVSLGCASPQSDNKL 78

Query: 209 XXXXXXXXXXXXXIPDMAEAVAPGVSPSLKNXXXXXXXXXXXXXXXXXXXXXXSTFNPVK 388
                        +P++AEA  PGVSPSLKN                      STF+PVK
Sbjct: 79  AALTSLAFLAAAVVPEIAEAAQPGVSPSLKNLLLSVVAGGVVVTVIGVAVAGVSTFDPVK 138

Query: 389 PK 394
            K
Sbjct: 139 RK 140


>tr|A9NTS2|A9NTS2_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 129

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 33/93 (35%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
 Frame = +2

Query: 113 LAPAPGRASPLKLVSNGSRVSM-SGDGKKEISXXXXXXXXXXXXXXIPDMAEAVAPGVSP 289
           L   P +    KL SN SRV M +  GKKE S              IP++AEA   GVSP
Sbjct: 35  LFTTPNKLYSPKLASNRSRVVMHASQGKKEQSLAGLTSLALAAAMVIPEIAEAAGSGVSP 94

Query: 290 SLKNXXXXXXXXXXXXXXXXXXXXXXSTFNPVK 388
           SLKN                      S F+PVK
Sbjct: 95  SLKNFLLSIAAGGVVATAIAGAVIGVSNFDPVK 127


>tr|A9RVW4|A9RVW4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_161232 PE=4 SV=1
          Length = 125

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 31/102 (30%), Positives = 44/102 (43%)
 Frame = +2

Query: 80  SKVLSRRGPCLLAPAPGRASPLKLVSNGSRVSMSGDGKKEISXXXXXXXXXXXXXXIPDM 259
           +K+ S +G  L  P  G+      +SNG+RVSMS   K+  +              +P++
Sbjct: 22  AKLPSHKGLALATPL-GKKQVSVAISNGNRVSMSLPAKENHNVMSLTGLALVAAAVVPEI 80

Query: 260 AEAVAPGVSPSLKNXXXXXXXXXXXXXXXXXXXXXXSTFNPV 385
           AEA  PGVS SL+N                      STF+PV
Sbjct: 81  AEAAQPGVSDSLRNLLLSVLAGGVVISVIGVAVAGVSTFDPV 122


>tr|A9NK10|A9NK10_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 135

 Score = 40.8 bits (94), Expect = 0.035
 Identities = 31/93 (33%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
 Frame = +2

Query: 122 APGRASPLKLVSNG-SRVSMSGDG---KKEISXXXXXXXXXXXXXXIPDMAEAVAPGVSP 289
           +P + S  KLV NG SRV M G     +++ +              IP+MAEA  PGVS 
Sbjct: 41  SPNKPSSSKLVGNGKSRVVMMGKDISEREQSNYAGLTAVALAAAMVIPEMAEAAVPGVSA 100

Query: 290 SLKNXXXXXXXXXXXXXXXXXXXXXXSTFNPVK 388
           SLKN                      S+F+PVK
Sbjct: 101 SLKNFLLSIASGSVVLGAIGVAVVGVSSFDPVK 133


>tr|Q4DT25|Q4DT25_TRYCR Putative uncharacterized protein
            OS=Trypanosoma cruzi GN=Tc00.1047053506265.20 PE=4 SV=1
          Length = 2729

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
 Frame = -2

Query: 412  SQLAESLRLDRVKGRDSSNGTSNGNKDNTSWYNTKQKV-FQRG*YSRSNSLSHIWNNCCS 236
            S  + S  L+ +  +   N   N N D    YN   +  +Q+  + +   L   WNN C 
Sbjct: 2021 SSSSSSSTLELLANKHDDNNVYNSNHDGIGEYNNSMRQKWQKRVFKKGGVLHKYWNNICE 2080

Query: 235  KYSEG 221
            +Y  G
Sbjct: 2081 RYGTG 2085


>tr|A3MVN7|A3MVN7_PYRCJ Putative uncharacterized protein
           OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1)
           GN=Pcal_1280 PE=4 SV=1
          Length = 471

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +2

Query: 89  LSRRG-PCLLAPAPGRASPLKLVSNGSRVSMSGDGKKE 199
           L RRG  C + P PG ASPL+LV  G+ V +   G +E
Sbjct: 96  LLRRGFDCYVVPHPGIASPLRLVEEGNEVRVERGGARE 133


>tr|B4JTF3|B4JTF3_DROGR GH23839 OS=Drosophila grimshawi GN=GH23839
           PE=4 SV=1
          Length = 484

 Score = 34.3 bits (77), Expect = 3.3
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
 Frame = -2

Query: 436 IMPSYGVYSQLAESLRLDRVKG-RDSSNGTSNGNKDNTSWYNTKQKVFQ-RG*YSRSNS- 266
           I P +G    ++ S+R+  +   RD  N +S G+    +  NT +  F  +   S++NS 
Sbjct: 397 ISPGFGEGLSISPSVRISELNTIRDDINSSSVGSNMFENTLNTAKNAFSLQSLQSQNNSD 456

Query: 265 LSHIWNNCCSKYSEGRRC 212
           LS + N C +K    RRC
Sbjct: 457 LSRMTNECTTKMPRSRRC 474


>tr|A5BCY2|A5BCY2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_016134 PE=4 SV=1
          Length = 254

 Score = 33.5 bits (75), Expect = 5.6
 Identities = 22/85 (25%), Positives = 38/85 (44%)
 Frame = -2

Query: 385 DRVKGRDSSNGTSNGNKDNTSWYNTKQKVFQRG*YSRSNSLSHIWNNCCSKYSEGRRCHK 206
           DR+KGR    G+S  ++D ++   +  K       S S  +  + +  CSK  E  R  +
Sbjct: 78  DRLKGRLRDEGSSRSHRDYSNSSTSANKRHASDLCSSSKRV--LEDGSCSKEEESLRDDE 135

Query: 205 ADLFLSIPTHRDAAAIGDELERRSP 131
            + FL+    R   A+G  ++   P
Sbjct: 136 VEEFLNSRVKRGRGAVGSRMDEAGP 160