NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK945975
Clone id YMU02A01NGRL0011_A24
Library
Length 238
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0011_A24. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCAGCTTGCAGAGATCAAGCATGCTCGCCTTGCCATGGTGGCTATGCTCATCTTCTACTT
TGAGGCTGGTCAGGGCAAAACCCCTCTTGGTGCCCTTTTATCATAAATGTAACGCAATGT
GACCAATCGGTATGGATGAAGGGTTCTCCAATCATCCATTTCTGTTTATACAGTTTTTTG
TAGCCTGGTTGTGTTTTTTAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P36494
Definition sp|P36494|CB4_SPIOL Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea
Align length 32
Score (bit) 62.8
E-value 5.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945975|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_A24, 5'
         (199 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P36494|CB4_SPIOL Chlorophyll a-b binding protein CP24, chloro...    63   5e-10
sp|P27525|CB4B_SOLLC Chlorophyll a-b binding protein CP24 10B, c...    62   1e-09
sp|P27524|CB4A_SOLLC Chlorophyll a-b binding protein CP24 10A, c...    62   1e-09
sp|Q9S7W1|CB4C_ARATH Chlorophyll a-b binding protein CP29.3, chl...    36   0.053
sp|Q07473|CB4A_ARATH Chlorophyll a-b binding protein CP29.1, chl...    36   0.069
sp|Q9XF88|CB4B_ARATH Chlorophyll a-b binding protein CP29.2, chl...    34   0.20 
sp|Q8NEN9|PDZD8_HUMAN PDZ domain-containing protein 8 OS=Homo sa...    30   2.9  
sp|P87149|MRS2_SCHPO Mitochondrial inner membrane magnesium tran...    29   6.5  
sp|P25387|GBLP_CHLRE Guanine nucleotide-binding protein subunit ...    29   6.5  

>sp|P36494|CB4_SPIOL Chlorophyll a-b binding protein CP24,
           chloroplastic OS=Spinacia oleracea PE=2 SV=1
          Length = 261

 Score = 62.8 bits (151), Expect = 5e-10
 Identities = 30/32 (93%), Positives = 32/32 (100%)
 Frame = +2

Query: 2   QLAEIKHARLAMVAMLIFYFEAGQGKTPLGAL 97
           +LAEIKHARLAM+AMLIFYFEAGQGKTPLGAL
Sbjct: 228 KLAEIKHARLAMLAMLIFYFEAGQGKTPLGAL 259


>sp|P27525|CB4B_SOLLC Chlorophyll a-b binding protein CP24 10B,
           chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3
           SV=1
          Length = 256

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 29/32 (90%), Positives = 32/32 (100%)
 Frame = +2

Query: 2   QLAEIKHARLAMVAMLIFYFEAGQGKTPLGAL 97
           +LAEIKH+RLAM+AMLIFYFEAGQGKTPLGAL
Sbjct: 223 KLAEIKHSRLAMLAMLIFYFEAGQGKTPLGAL 254


>sp|P27524|CB4A_SOLLC Chlorophyll a-b binding protein CP24 10A,
           chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3
           SV=1
          Length = 256

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 29/32 (90%), Positives = 32/32 (100%)
 Frame = +2

Query: 2   QLAEIKHARLAMVAMLIFYFEAGQGKTPLGAL 97
           ++AEIKHARLAM+AMLIFYFEAGQGKTPLGAL
Sbjct: 223 KVAEIKHARLAMLAMLIFYFEAGQGKTPLGAL 254


>sp|Q9S7W1|CB4C_ARATH Chlorophyll a-b binding protein CP29.3,
           chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=2
           SV=1
          Length = 276

 Score = 36.2 bits (82), Expect = 0.053
 Identities = 20/33 (60%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
 Frame = +2

Query: 2   QLAEIKHARLAMVAMLIFYFEAG-QGKTPLGAL 97
           +LAEIKH+RLAMVA LIF  +A   GK P+  L
Sbjct: 239 KLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFL 271


>sp|Q07473|CB4A_ARATH Chlorophyll a-b binding protein CP29.1,
           chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=2
           SV=1
          Length = 290

 Score = 35.8 bits (81), Expect = 0.069
 Identities = 21/30 (70%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
 Frame = +2

Query: 2   QLAEIKHARLAMVAMLIFYFE-AGQGKTPL 88
           QLAEIKHARLAMVA L F  + A  GK PL
Sbjct: 239 QLAEIKHARLAMVAFLGFAVQAAATGKGPL 268


>sp|Q9XF88|CB4B_ARATH Chlorophyll a-b binding protein CP29.2,
           chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1
           SV=1
          Length = 287

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 20/30 (66%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +2

Query: 2   QLAEIKHARLAMVAMLIFYFE-AGQGKTPL 88
           QLAEIKHARLAMV  L F  + A  GK PL
Sbjct: 236 QLAEIKHARLAMVGFLGFAVQAAATGKGPL 265


>sp|Q8NEN9|PDZD8_HUMAN PDZ domain-containing protein 8 OS=Homo
           sapiens GN=PDZD8 PE=1 SV=1
          Length = 1154

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 76  QNPSWCPFIINVTQCDQSVWMKGSPIIHFCLY 171
           QNP+WC +      C + VW K +    FC Y
Sbjct: 849 QNPTWCDY------CKKKVWTKAASQCMFCAY 874


>sp|P87149|MRS2_SCHPO Mitochondrial inner membrane magnesium
           transporter mrs2 OS=Schizosaccharomyces pombe GN=mrs2
           PE=2 SV=1
          Length = 422

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 18  SMLALPWWLCSSSTLRLVRAKPLLVPFYHKCNAM*PIGMDEGFSNHPFL 164
           S+ A   +L S   L++ R K + +  YH+CN   PI +D      P+L
Sbjct: 376 SIFAFAAFLSSLGILKIRRLKRIQMALYHRCNL--PISLDPRSLRPPYL 422


>sp|P25387|GBLP_CHLRE Guanine nucleotide-binding protein subunit
           beta-like protein OS=Chlamydomonas reinhardtii GN=GBLP
           PE=2 SV=1
          Length = 318

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 197 KTQPGYKKLYKQKWMIGEPFIHTDWSHCVTF 105
           KT   +  L + K+ IGEP  HT+W  CV F
Sbjct: 128 KTIKLWNTLGECKYTIGEPEGHTEWVSCVRF 158
tr_hit_id A9PK00
Definition tr|A9PK00|A9PK00_POPJC Putative uncharacterized protein OS=Populus jackii
Align length 32
Score (bit) 63.5
E-value 5.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945975|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_A24, 5'
         (199 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9PK00|A9PK00_POPJC Putative uncharacterized protein OS=Popul...    64   5e-09
tr|A9PGD4|A9PGD4_POPTR Putative uncharacterized protein OS=Popul...    64   5e-09
tr|Q9XF90|Q9XF90_ARATH Lhcb6 protein OS=Arabidopsis thaliana GN=...    63   8e-09
tr|Q9LMQ2|Q9LMQ2_ARATH F7H2.16 protein (Chlorophyll A-B binding ...    63   8e-09
tr|Q7XV11|Q7XV11_ORYSJ Os04g0457000 protein OS=Oryza sativa subs...    63   8e-09
tr|Q01JQ3|Q01JQ3_ORYSA H0523F07.10 protein OS=Oryza sativa GN=H0...    63   8e-09
tr|A9PFP4|A9PFP4_POPTR Putative uncharacterized protein OS=Popul...    63   8e-09
tr|A3AUG3|A3AUG3_ORYSJ Putative uncharacterized protein OS=Oryza...    63   8e-09
tr|A2XU61|A2XU61_ORYSI Putative uncharacterized protein OS=Oryza...    63   8e-09
tr|A9RU32|A9RU32_PHYPA Predicted protein OS=Physcomitrella paten...    62   1e-08
tr|Q9XQB6|Q9XQB6_PHAAU Chlorophyll a/b-binding protein CP24 OS=P...    62   1e-08
tr|A5ASW8|A5ASW8_VITVI Putative uncharacterized protein (Chromos...    62   1e-08
tr|Q6DV17|Q6DV17_BRARP Lhcb6 protein (Fragment) OS=Brassica rapa...    62   2e-08
tr|Q0PWS6|Q0PWS6_TOBAC Chloroplast pigment-binding protein CP24 ...    62   2e-08
tr|B8PYF9|B8PYF9_9POAL Chloroplast a/b binding protein cab-PhE11...    62   2e-08
tr|B4FXB0|B4FXB0_MAIZE Chlorophyll a-b binding protein CP24 OS=Z...    62   2e-08
tr|Q41957|Q41957_ARATH Chlorophyll a-b-binding protein (Tomato) ...    61   3e-08
tr|B6TRW9|B6TRW9_MAIZE Putative uncharacterized protein OS=Zea m...    60   5e-08
tr|B6T037|B6T037_MAIZE Chlorophyll a-b binding protein CP24 OS=Z...    60   5e-08
tr|B4F9J6|B4F9J6_MAIZE Putative uncharacterized protein OS=Zea m...    60   5e-08
tr|Q41748|Q41748_MAIZE Chlorophyll a/b-binding apoprotein CP24 O...    57   6e-07
tr|A9PK34|A9PK34_POPJC Putative uncharacterized protein OS=Popul...    38   0.22 
tr|Q6Z411|Q6Z411_ORYSJ Os07g0558400 protein OS=Oryza sativa subs...    36   1.1  
tr|Q0WW97|Q0WW97_ARATH Lhcb4-protein OS=Arabidopsis thaliana GN=...    36   1.1  
tr|Q0PWS7|Q0PWS7_TOBAC Chloroplast pigment-binding protein CP29 ...    36   1.1  
tr|O65817|O65817_HORVU Chlorophyll a/b-binding protein (Fragment...    36   1.1  
tr|O65217|O65217_ORYSA Chlorophyll a/b-binding protein OS=Oryza ...    36   1.1  
tr|O24561|O24561_MAIZE Putative uncharacterized protein OS=Zea m...    36   1.1  
tr|B7FIZ5|B7FIZ5_MEDTR Putative uncharacterized protein OS=Medic...    36   1.1  
tr|B4FJG1|B4FJG1_MAIZE Putative uncharacterized protein OS=Zea m...    36   1.1  

>tr|A9PK00|A9PK00_POPJC Putative uncharacterized protein OS=Populus
           jackii PE=2 SV=1
          Length = 257

 Score = 63.5 bits (153), Expect = 5e-09
 Identities = 30/32 (93%), Positives = 32/32 (100%)
 Frame = +2

Query: 2   QLAEIKHARLAMVAMLIFYFEAGQGKTPLGAL 97
           +LAEIKHARLAM+AMLIFYFEAGQGKTPLGAL
Sbjct: 224 KLAEIKHARLAMIAMLIFYFEAGQGKTPLGAL 255


>tr|A9PGD4|A9PGD4_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 257

 Score = 63.5 bits (153), Expect = 5e-09
 Identities = 30/32 (93%), Positives = 32/32 (100%)
 Frame = +2

Query: 2   QLAEIKHARLAMVAMLIFYFEAGQGKTPLGAL 97
           +LAEIKHARLAM+AMLIFYFEAGQGKTPLGAL
Sbjct: 224 KLAEIKHARLAMIAMLIFYFEAGQGKTPLGAL 255


>tr|Q9XF90|Q9XF90_ARATH Lhcb6 protein OS=Arabidopsis thaliana
           GN=Lhcb6 PE=2 SV=1
          Length = 258

 Score = 62.8 bits (151), Expect = 8e-09
 Identities = 30/32 (93%), Positives = 32/32 (100%)
 Frame = +2

Query: 2   QLAEIKHARLAMVAMLIFYFEAGQGKTPLGAL 97
           +LAEIKH+RLAMVAMLIFYFEAGQGKTPLGAL
Sbjct: 225 KLAEIKHSRLAMVAMLIFYFEAGQGKTPLGAL 256


>tr|Q9LMQ2|Q9LMQ2_ARATH F7H2.16 protein (Chlorophyll A-B binding
           protein) (Lhcb6 protein) (Putative chlorophyll binding
           protein) OS=Arabidopsis thaliana GN=At1g15820/F7H2.16
           PE=2 SV=1
          Length = 258

 Score = 62.8 bits (151), Expect = 8e-09
 Identities = 30/32 (93%), Positives = 32/32 (100%)
 Frame = +2

Query: 2   QLAEIKHARLAMVAMLIFYFEAGQGKTPLGAL 97
           +LAEIKH+RLAMVAMLIFYFEAGQGKTPLGAL
Sbjct: 225 KLAEIKHSRLAMVAMLIFYFEAGQGKTPLGAL 256


>tr|Q7XV11|Q7XV11_ORYSJ Os04g0457000 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0036B21.6 PE=2 SV=1
          Length = 252

 Score = 62.8 bits (151), Expect = 8e-09
 Identities = 30/32 (93%), Positives = 32/32 (100%)
 Frame = +2

Query: 2   QLAEIKHARLAMVAMLIFYFEAGQGKTPLGAL 97
           +LAEIKHARLAM+AMLIFYFEAGQGKTPLGAL
Sbjct: 219 KLAEIKHARLAMLAMLIFYFEAGQGKTPLGAL 250


>tr|Q01JQ3|Q01JQ3_ORYSA H0523F07.10 protein OS=Oryza sativa
           GN=H0523F07.10 PE=4 SV=1
          Length = 252

 Score = 62.8 bits (151), Expect = 8e-09
 Identities = 30/32 (93%), Positives = 32/32 (100%)
 Frame = +2

Query: 2   QLAEIKHARLAMVAMLIFYFEAGQGKTPLGAL 97
           +LAEIKHARLAM+AMLIFYFEAGQGKTPLGAL
Sbjct: 219 KLAEIKHARLAMLAMLIFYFEAGQGKTPLGAL 250


>tr|A9PFP4|A9PFP4_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 257

 Score = 62.8 bits (151), Expect = 8e-09
 Identities = 30/32 (93%), Positives = 32/32 (100%)
 Frame = +2

Query: 2   QLAEIKHARLAMVAMLIFYFEAGQGKTPLGAL 97
           ++AEIKHARLAMVAMLIFYFEAGQGKTPLGAL
Sbjct: 224 KVAEIKHARLAMVAMLIFYFEAGQGKTPLGAL 255


>tr|A3AUG3|A3AUG3_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_014435 PE=4 SV=1
          Length = 236

 Score = 62.8 bits (151), Expect = 8e-09
 Identities = 30/32 (93%), Positives = 32/32 (100%)
 Frame = +2

Query: 2   QLAEIKHARLAMVAMLIFYFEAGQGKTPLGAL 97
           +LAEIKHARLAM+AMLIFYFEAGQGKTPLGAL
Sbjct: 203 KLAEIKHARLAMLAMLIFYFEAGQGKTPLGAL 234


>tr|A2XU61|A2XU61_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_16135 PE=4 SV=1
          Length = 252

 Score = 62.8 bits (151), Expect = 8e-09
 Identities = 30/32 (93%), Positives = 32/32 (100%)
 Frame = +2

Query: 2   QLAEIKHARLAMVAMLIFYFEAGQGKTPLGAL 97
           +LAEIKHARLAM+AMLIFYFEAGQGKTPLGAL
Sbjct: 219 KLAEIKHARLAMLAMLIFYFEAGQGKTPLGAL 250


>tr|A9RU32|A9RU32_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_119427 PE=4 SV=1
          Length = 219

 Score = 62.4 bits (150), Expect = 1e-08
 Identities = 31/32 (96%), Positives = 31/32 (96%)
 Frame = +2

Query: 2   QLAEIKHARLAMVAMLIFYFEAGQGKTPLGAL 97
           QLAEIKHARLAMVAMLIFYFEAGQG TPLGAL
Sbjct: 186 QLAEIKHARLAMVAMLIFYFEAGQGFTPLGAL 217