DK945979 |
Clone id |
YMU02A01NGRL0011_B04 |
Library |
YMU02 |
Length |
638 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0011_B04. 5' end sequence. |
Accession |
DK945979 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL170Contig1 |
Sequence |
GAGCTGTCTGCTCAAGAGCTTGAAAACCTGATGTTTATCGTTGCCAATCCTCGTCAGTTC AAGATTCCTGACTGGTTCTTGAACAGGAAGAAAGATTACAAGGATGGCCGATTTTCTCAA GTGGTGTCTAATCAACTCGACATGAAGTTGAGAGATGACCTGGAAAGGCTGAAAAAGATC AGAAACCACCGTGGTCTTCGTCATTATTGGGGCTTGCGTGTGCGTGGTCAGCACACAAAA ACAACTGGAAGGCGGGGGAGGACAGTTGGTGTGTCCAAGAAGCGTTAAGTCAAGGCACTG CAGAGTCTTTAGGATGCAGTTCCTAAGAGTTTTGATACTGATCTGTGCGACAATATTTTT AGAGTTAAAAGCCAGCTTTTTTGGTTTGGTTCCCGGCTGGCTGATTAGAATTGATCATGC ACGGGATCTTTCCTGACCTGTGCGCTGGGTTAGTTTTCTTCAGCTGGAGGGCTTCTTCTC TTTATCAGCTGGTATTGTAATTCCATGAGAGCCTTTTAAAGTATTCTTGCCTTGATTAGG TATTTACTGAAGTGAATGGGTAACACTTCTGGAATTATGTTTCTGATATGTTGTTTTGTT ACTTTATTTAGTTGTCTGGAGGACAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P34788 |
Definition |
sp|P34788|RS18_ARATH 40S ribosomal protein S18 OS=Arabidopsis thaliana |
Align length |
78 |
Score (bit) |
151.0 |
E-value |
3.0e-36 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7PUC0 |
Definition |
tr|A7PUC0|A7PUC0_VITVI Chromosome chr7 scaffold_31, whole genome shotgun sequence (Chromosome chr18 scaffold_59, whole genome shotgun sequence) OS=Vitis vinifera |
Align length |
78 |
Score (bit) |
156.0 |
E-value |
1.0e-36 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK945979|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0011_B04, 5' (624 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7PUC0|A7PUC0_VITVI Chromosome chr7 scaffold_31, whole genome... 156 1e-36 tr|A7NWN0|A7NWN0_VITVI Chromosome chr5 scaffold_2, whole genome ... 156 1e-36 tr|B7FMJ8|B7FMJ8_MEDTR Putative uncharacterized protein OS=Medic... 155 2e-36 tr|A9TES6|A9TES6_PHYPA Predicted protein OS=Physcomitrella paten... 155 2e-36 tr|A9SF68|A9SF68_PHYPA Predicted protein OS=Physcomitrella paten... 154 4e-36 tr|A9RKQ8|A9RKQ8_PHYPA Predicted protein OS=Physcomitrella paten... 154 4e-36 tr|B7FH21|B7FH21_MEDTR Putative uncharacterized protein OS=Medic... 154 5e-36 tr|A9RKR2|A9RKR2_PHYPA Predicted protein OS=Physcomitrella paten... 154 5e-36 tr|Q8H590|Q8H590_ORYSJ Os03g0794700 protein OS=Oryza sativa subs... 152 2e-35 tr|Q8H588|Q8H588_ORYSJ Os07g0173700 protein OS=Oryza sativa subs... 152 2e-35 tr|Q0D8A3|Q0D8A3_ORYSJ Os07g0173500 protein OS=Oryza sativa subs... 152 2e-35 tr|B4G286|B4G286_MAIZE 40S ribosomal protein S18 OS=Zea mays PE=... 152 2e-35 tr|A3ANK5|A3ANK5_ORYSJ Putative uncharacterized protein OS=Oryza... 152 2e-35 tr|A2YIM5|A2YIM5_ORYSI Putative uncharacterized protein OS=Oryza... 152 2e-35 tr|A2XMV2|A2XMV2_ORYSI Putative uncharacterized protein OS=Oryza... 152 2e-35 tr|Q5PNZ9|Q5PNZ9_ARATH At1g22780 (Pointed first leaf) OS=Arabido... 151 4e-35 tr|B6SQS0|B6SQS0_MAIZE 40S ribosomal protein S18 OS=Zea mays PE=... 151 4e-35 tr|B4FUS2|B4FUS2_MAIZE 40S ribosomal protein S18 OS=Zea mays PE=... 151 4e-35 tr|A9P8I9|A9P8I9_POPTR Putative uncharacterized protein OS=Popul... 150 5e-35 tr|A9P8E8|A9P8E8_POPTR Putative uncharacterized protein OS=Popul... 150 5e-35 tr|Q6RJY9|Q6RJY9_CAPAN Putative ribosomal protein OS=Capsicum an... 149 1e-34 tr|Q8L806|Q8L806_WHEAT Putative ribosomal protein S18 OS=Triticu... 148 2e-34 tr|Q3HRY6|Q3HRY6_SOLTU Putative uncharacterized protein OS=Solan... 148 2e-34 tr|A9NQU0|A9NQU0_PICSI Putative uncharacterized protein OS=Picea... 146 1e-33 tr|A4SBF6|A4SBF6_OSTLU Ribosomal protein S18, component of cytos... 145 3e-33 tr|A8HVP2|A8HVP2_CHLRE Ribosomal protein S18 OS=Chlamydomonas re... 134 4e-30 tr|A8UA21|A8UA21_SIPNU Putative ribosomal protein S18 OS=Sipuncu... 132 2e-29 tr|Q4H450|Q4H450_CRAGI Ribosomal protein S18 OS=Crassostrea giga... 131 4e-29 tr|B6RB81|B6RB81_HALDI 40S ribosomal protein S18 OS=Haliotis dis... 131 4e-29 tr|A8UEN5|A8UEN5_AREMA Ribosomal protein rps18 (Fragment) OS=Are... 130 5e-29
>tr|A7PUC0|A7PUC0_VITVI Chromosome chr7 scaffold_31, whole genome shotgun sequence (Chromosome chr18 scaffold_59, whole genome shotgun sequence) OS=Vitis vinifera GN=GSVIVT00023737001 PE=4 SV=1 Length = 101
Score = 156 bits (394), Expect = 1e-36 Identities = 74/78 (94%), Positives = 75/78 (96%) Frame = +1
Query: 1 ELSAQELENLMFIVANPRQFKIPDWFLNRKKDYKDGRFSQVVSNQLDMKLRDDLERLKKI 180 ELSA ELENLM IVANPRQFKIPDWFLNRKKDYKDGR+SQVVSN LDMKLRDDLERLKKI Sbjct: 7 ELSAAELENLMVIVANPRQFKIPDWFLNRKKDYKDGRYSQVVSNALDMKLRDDLERLKKI 66
Query: 181 RNHRGLRHYWGLRVRGQH 234 RNHRGLRHYWGLRVRGQH Sbjct: 67 RNHRGLRHYWGLRVRGQH 84
>tr|A7NWN0|A7NWN0_VITVI Chromosome chr5 scaffold_2, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00019990001 PE=4 SV=1 Length = 157
Score = 156 bits (394), Expect = 1e-36 Identities = 74/78 (94%), Positives = 75/78 (96%) Frame = +1
Query: 1 ELSAQELENLMFIVANPRQFKIPDWFLNRKKDYKDGRFSQVVSNQLDMKLRDDLERLKKI 180 ELSA ELENLM IVANPRQFKIPDWFLNRKKDYKDGR+SQVVSN LDMKLRDDLERLKKI Sbjct: 63 ELSAAELENLMVIVANPRQFKIPDWFLNRKKDYKDGRYSQVVSNALDMKLRDDLERLKKI 122
Query: 181 RNHRGLRHYWGLRVRGQH 234 RNHRGLRHYWGLRVRGQH Sbjct: 123 RNHRGLRHYWGLRVRGQH 140
>tr|B7FMJ8|B7FMJ8_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 152
Score = 155 bits (392), Expect = 2e-36 Identities = 71/78 (91%), Positives = 76/78 (97%) Frame = +1
Query: 1 ELSAQELENLMFIVANPRQFKIPDWFLNRKKDYKDGRFSQVVSNQLDMKLRDDLERLKKI 180 ELSA EL+N+M +VANPRQFK+PDWFLNRKKDYKDG+FSQVVSNQLDMKLRDDLERLKKI Sbjct: 58 ELSAAELDNIMTVVANPRQFKVPDWFLNRKKDYKDGKFSQVVSNQLDMKLRDDLERLKKI 117
Query: 181 RNHRGLRHYWGLRVRGQH 234 RNHRGLRHYWGLRVRGQH Sbjct: 118 RNHRGLRHYWGLRVRGQH 135
>tr|A9TES6|A9TES6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_221618 PE=4 SV=1 Length = 152
Score = 155 bits (392), Expect = 2e-36 Identities = 74/78 (94%), Positives = 75/78 (96%) Frame = +1
Query: 1 ELSAQELENLMFIVANPRQFKIPDWFLNRKKDYKDGRFSQVVSNQLDMKLRDDLERLKKI 180 ELSA ELENLM IVANPRQFKIPDWFLNRKKD+KDGRFSQVVSN LDMKLRDDLERLKKI Sbjct: 58 ELSAAELENLMVIVANPRQFKIPDWFLNRKKDHKDGRFSQVVSNALDMKLRDDLERLKKI 117
Query: 181 RNHRGLRHYWGLRVRGQH 234 RNHRGLRHYWGLRVRGQH Sbjct: 118 RNHRGLRHYWGLRVRGQH 135
>tr|A9SF68|A9SF68_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_184305 PE=4 SV=1 Length = 152
Score = 154 bits (389), Expect = 4e-36 Identities = 73/78 (93%), Positives = 75/78 (96%) Frame = +1
Query: 1 ELSAQELENLMFIVANPRQFKIPDWFLNRKKDYKDGRFSQVVSNQLDMKLRDDLERLKKI 180 ELSA ELENLM IVANPRQFKIPDWFLNRKKD+KDGR+SQVVSN LDMKLRDDLERLKKI Sbjct: 58 ELSAAELENLMVIVANPRQFKIPDWFLNRKKDHKDGRYSQVVSNALDMKLRDDLERLKKI 117
Query: 181 RNHRGLRHYWGLRVRGQH 234 RNHRGLRHYWGLRVRGQH Sbjct: 118 RNHRGLRHYWGLRVRGQH 135
>tr|A9RKQ8|A9RKQ8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_175952 PE=4 SV=1 Length = 152
Score = 154 bits (389), Expect = 4e-36 Identities = 73/78 (93%), Positives = 75/78 (96%) Frame = +1
Query: 1 ELSAQELENLMFIVANPRQFKIPDWFLNRKKDYKDGRFSQVVSNQLDMKLRDDLERLKKI 180 ELSA ELENLM IVANPRQFKIPDWFLNRKKD+KDGR+SQVVSN LDMKLRDDLERLKKI Sbjct: 58 ELSAAELENLMVIVANPRQFKIPDWFLNRKKDHKDGRYSQVVSNALDMKLRDDLERLKKI 117
Query: 181 RNHRGLRHYWGLRVRGQH 234 RNHRGLRHYWGLRVRGQH Sbjct: 118 RNHRGLRHYWGLRVRGQH 135
>tr|B7FH21|B7FH21_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 152
Score = 154 bits (388), Expect = 5e-36 Identities = 70/78 (89%), Positives = 75/78 (96%) Frame = +1
Query: 1 ELSAQELENLMFIVANPRQFKIPDWFLNRKKDYKDGRFSQVVSNQLDMKLRDDLERLKKI 180 EL+ ELEN+M +VANPRQFK+PDWFLNRKKDYKDG+FSQVVSNQLDMKLRDDLERLKKI Sbjct: 58 ELTVAELENIMTVVANPRQFKVPDWFLNRKKDYKDGKFSQVVSNQLDMKLRDDLERLKKI 117
Query: 181 RNHRGLRHYWGLRVRGQH 234 RNHRGLRHYWGLRVRGQH Sbjct: 118 RNHRGLRHYWGLRVRGQH 135
>tr|A9RKR2|A9RKR2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_175960 PE=4 SV=1 Length = 152
Score = 154 bits (388), Expect = 5e-36 Identities = 72/78 (92%), Positives = 75/78 (96%) Frame = +1
Query: 1 ELSAQELENLMFIVANPRQFKIPDWFLNRKKDYKDGRFSQVVSNQLDMKLRDDLERLKKI 180 ELSA ELENLM IVANPRQFK+PDWFLNRKKD+KDGR+SQVVSN LDMKLRDDLERLKKI Sbjct: 58 ELSAAELENLMVIVANPRQFKVPDWFLNRKKDHKDGRYSQVVSNALDMKLRDDLERLKKI 117
Query: 181 RNHRGLRHYWGLRVRGQH 234 RNHRGLRHYWGLRVRGQH Sbjct: 118 RNHRGLRHYWGLRVRGQH 135
>tr|Q8H590|Q8H590_ORYSJ Os03g0794700 protein OS=Oryza sativa subsp. japonica GN=OJ1656_E11.104 PE=2 SV=1 Length = 152
Score = 152 bits (383), Expect = 2e-35 Identities = 70/78 (89%), Positives = 74/78 (94%) Frame = +1
Query: 1 ELSAQELENLMFIVANPRQFKIPDWFLNRKKDYKDGRFSQVVSNQLDMKLRDDLERLKKI 180 EL+ +ELE LM +VANPRQFK+PDWFLNRKKDYKDGRFSQVVSN LDMKLRDDLERLKKI Sbjct: 58 ELTPEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKI 117
Query: 181 RNHRGLRHYWGLRVRGQH 234 RNHRGLRHYWGLRVRGQH Sbjct: 118 RNHRGLRHYWGLRVRGQH 135
>tr|Q8H588|Q8H588_ORYSJ Os07g0173700 protein OS=Oryza sativa subsp. japonica GN=OJ1656_E11.108 PE=4 SV=1 Length = 148
Score = 152 bits (383), Expect = 2e-35 Identities = 70/78 (89%), Positives = 74/78 (94%) Frame = +1
Query: 1 ELSAQELENLMFIVANPRQFKIPDWFLNRKKDYKDGRFSQVVSNQLDMKLRDDLERLKKI 180 EL+ +ELE LM +VANPRQFK+PDWFLNRKKDYKDGRFSQVVSN LDMKLRDDLERLKKI Sbjct: 54 ELTPEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKI 113
Query: 181 RNHRGLRHYWGLRVRGQH 234 RNHRGLRHYWGLRVRGQH Sbjct: 114 RNHRGLRHYWGLRVRGQH 131
|