BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945982|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_B07, 5'
         (136 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q19584|UFD1_CAEEL Ubiquitin fusion degradation protein 1 homo...    29   8.3  

>sp|Q19584|UFD1_CAEEL Ubiquitin fusion degradation protein 1 homolog
           OS=Caenorhabditis elegans GN=ufd-1 PE=1 SV=1
          Length = 342

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 131 FIIFAQFFLPPACRSNISSLLVSGRSLLP 45
           F+++   FLP A +S IS +   G+ LLP
Sbjct: 25  FVVYGPVFLPNATQSKISEINYGGKILLP 53

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK945982|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_B07, 5'
         (136 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******