DK945986 [AcEST]

DK945986
Clone id	YMU02A01NGRL0011_B11
Library	YMU02
Length	493
Definition	Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0011_B11. 5' end sequence.
Accession	DK945986
Tissue type	young leaves
Developmental stage	sporophyte
Contig ID	CL1Contig3
Sequence	TATCGTAGCGGGTATAGTTTAGTGGTAAAAGTGTGACTCGTCTCGCAGTGATTTTGATAG TTGAGGGATCGTATCTCGGCTAAATTAACTGAAAGAAAAAACTTTATCTTCGCAGAAAAT ATGTGTTTTCTTATTATTTCTCCAAAATTAGAGGTAGATTAATCAATCTCGTCACTCATT CATTTCAAGAACTAGGGAAGATAGTGACGAAGCAGAATTGTTTTGGTACCCCAAGAAATA CTTGGTTTAATTTCTACTTCCGGGGAGATAAATAAAGAAAAAAAATCTATGGGTAGACTT CTAAAATAGCTAACTCATCGTCACTAAACCTCAAAAAATAATTCTGGAAAAAAAAGTTGG AATAAATAATTCCGGGTTGGTCAAAATTATGGAACTTCTTTTTGGTTGAACGGAATCCCT CGTTTCACCAACTCGTTGAAATATATTTCCCTAAGGTTTTTTTCCCGAAAAAAAAAAAAA AAAAAAAAAAAAA
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	Q7V275
Definition	sp\|Q7V275\|GLGA_PROMP Glycogen synthase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1378 / MED4)
Align length	20
Score (bit)	29.3
E-value	8.9
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK945986\|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0011_B11, 5' (467 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp\|Q7V275\|GLGA_PROMP Glycogen synthase OS=Prochlorococcus marinu... 29 8.9 sp\|P87244\|ALP16_SCHPO Spindle pole body component alp16 OS=Schiz... 29 8.9 >sp\|Q7V275\|GLGA_PROMP Glycogen synthase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1378 / MED4) GN=glgA PE=3 SV=1 Length = 483 Score = 29.3 bits (64), Expect = 8.9 Identities = 12/20 (60%), Positives = 13/20 (65%) Frame = +3 Query: 366 IIPGWSKLWNFFLVERNPSF 425 IIPG+SKLWN V P F Sbjct: 40 IIPGYSKLWNLLEVSSEPVF 59 >sp\|P87244\|ALP16_SCHPO Spindle pole body component alp16 OS=Schizosaccharomyces pombe GN=alp16 PE=1 SV=1 Length = 759 Score = 29.3 bits (64), Expect = 8.9 Identities = 14/39 (35%), Positives = 22/39 (56%) Frame = -2 Query: 415 FRSTKKKFHNFDQPGIIYSNFFFQNYFLRFSDDELAILE 299 ++ K F FD +S F FQNY FSD+ +++L+ Sbjct: 515 YKVLKNDFQVFDLLNFFHSTFLFQNY--EFSDNVISLLK 551
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	A6D2J9
Definition	tr\|A6D2J9\|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio shilonii AK1
Align length	50
Score (bit)	35.0
E-value	1.9
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK945986\|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0011_B11, 5' (467 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr\|A6D2J9\|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibri... 35 1.9 >tr\|A6D2J9\|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio shilonii AK1 GN=VSAK1_01567 PE=4 SV=1 Length = 319 Score = 35.0 bits (79), Expect = 1.9 Identities = 16/50 (32%), Positives = 31/50 (62%) Frame = -1 Query: 188 LKMSDEIDSTSNFGEIIRKHIFSAKIKFFLSVNLAEIRSLNYQNHCET 39 LK +++E+D ST + ++++F A +F+L VNL + R++ Q C + Sbjct: 234 LKQIANELDISTKSINLFFKEYLFIAPKRFYLLVNLFKFRNILIQGKCSS 283