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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946006
Clone id YMU02A01NGRL0011_C12
Library
Length 427
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0011_C12. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
ACGCTTCATCTGTGCTCTCTTCCTCTTTCTGTAGCTTTACAGCTCCCAGCGATGGCATCC
ACAATCACCTTCACCCCCTCCGGCCTGGTCTCGCCATTAAAGGCACTTGCCTCCTACAAA
TCGTCCTTCACAAGAACTCACTCTACACGGGGCGGGCTGACTGCAGTATTTGCGAGCAAG
GCCAGGGTGAGCTGCGCTGCAAGCGAGCAAAACAGAGGCATTGAGGGAAGCGGCAAGCAA
ATCGCCACCGCCCTCACCCTAGCTGCGATTCTCAGCACTGCACCTCTAGCGTTTCACCAC
AACGACACTGCGAGACATTGCCGGCCTCACCCCCAGCAAGGACTCCAAGGCCTACGCAAA
GAGAGAGGAGAAGGAAATCAATAAGCTTGCCAAGAGGCTCGACAAGTACACTCCCAACAG
TGCTCCT
■■Homology search results ■■ -
sp_hit_id P13192
Definition sp|P13192|PSAF_HORVU Photosystem I reaction center subunit III, chloroplastic OS=Hordeum vulgare
Align length 38
Score (bit) 53.1
E-value 4.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946006|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_C12, 5'
         (427 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P13192|PSAF_HORVU Photosystem I reaction center subunit III, ...    53   4e-07
sp|P12356|PSAF_CHLRE Photosystem I reaction center subunit III, ...    51   2e-06
sp|Q9SHE8|PSAF_ARATH Photosystem I reaction center subunit III, ...    50   4e-06
sp|P46486|PSAF_FLATR Photosystem I reaction center subunit III, ...    47   2e-05
sp|P12355|PSAF_SPIOL Photosystem I reaction center subunit III, ...    45   1e-04
sp|O78457|PSAF_GUITH Photosystem I reaction center subunit III O...    44   3e-04
sp|P51193|PSAF_PORPU Photosystem I reaction center subunit III O...    39   0.009
sp|P48115|PSAF_CYAPA Photosystem I reaction center subunit III O...    38   0.020
sp|Q1XDU4|PSAF_PORYE Photosystem I reaction center subunit III O...    37   0.026
sp|Q9DH21|ORF23_TTVV1 Probable protein VP2 OS=Torque teno virus ...    33   0.47 
sp|Q75D46|BUR1_ASHGO Serine/threonine-protein kinase BUR1 OS=Ash...    32   0.82 
sp|P0A401|PSAF_THEEB Photosystem I reaction center subunit III O...    32   1.1  
sp|P0A402|PSAF_SYNEN Photosystem I reaction center subunit III O...    32   1.1  
sp|P42048|PSAF_CUCSA Photosystem I reaction center subunit III (...    32   1.4  
sp|Q08893|E75_MANSE Ecdysone-inducible protein E75 OS=Manduca se...    31   1.8  
sp|P23078|PSAF_THEVL Photosystem I reaction center subunit III (...    31   2.4  
sp|Q6C414|SEC31_YARLI Protein transport protein SEC31 OS=Yarrowi...    30   4.1  
sp|P13193|PSAF_MAIZE Photosystem I reaction center subunit III (...    30   4.1  
sp|P01062|IBB_PHAAU Bowman-Birk type trypsin inhibitor OS=Phaseo...    30   5.2  
sp|P20119|PSAF_PEA Photosystem I reaction center subunit III (Fr...    30   5.3  
sp|P14873|MAP1B_MOUSE Microtubule-associated protein 1B OS=Mus m...    29   7.0  
sp|Q5TCM9|LCE5A_HUMAN Late cornified envelope protein 5A OS=Homo...    29   7.0  
sp|P34999|GHRHR_PIG Growth hormone-releasing hormone receptor OS...    29   7.0  
sp|Q03700|CARP4_RHINI Rhizopuspepsin-4 OS=Rhizopus niveus PE=3 SV=1    29   9.1  

>sp|P13192|PSAF_HORVU Photosystem I reaction center subunit III,
           chloroplastic OS=Hordeum vulgare GN=PSAF PE=1 SV=2
          Length = 235

 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 24/38 (63%), Positives = 30/38 (78%)
 Frame = +2

Query: 314 DIAGLTPSKDSKAYAKREEKEINKLAKRLDKYTPNSAP 427
           DIAGLTP K+SKA+AKRE++ + KL   L KY P+SAP
Sbjct: 78  DIAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAP 115


>sp|P12356|PSAF_CHLRE Photosystem I reaction center subunit III,
           chloroplastic OS=Chlamydomonas reinhardtii GN=PSAF PE=1
           SV=1
          Length = 227

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 24/40 (60%), Positives = 30/40 (75%)
 Frame = +2

Query: 308 LRDIAGLTPSKDSKAYAKREEKEINKLAKRLDKYTPNSAP 427
           + DIAGLTP  +SKAYAK E+KE+  L KRL +Y  +SAP
Sbjct: 61  MADIAGLTPCSESKAYAKLEKKELKTLEKRLKQYEADSAP 100


>sp|Q9SHE8|PSAF_ARATH Photosystem I reaction center subunit III,
           chloroplastic OS=Arabidopsis thaliana GN=PSAF PE=1 SV=1
          Length = 221

 Score = 50.1 bits (118), Expect = 4e-06
 Identities = 23/38 (60%), Positives = 28/38 (73%)
 Frame = +2

Query: 314 DIAGLTPSKDSKAYAKREEKEINKLAKRLDKYTPNSAP 427
           DI+GLTP KDSK +AKRE+++I KL   L  Y P SAP
Sbjct: 68  DISGLTPCKDSKQFAKREKQQIKKLESSLKLYAPESAP 105


>sp|P46486|PSAF_FLATR Photosystem I reaction center subunit III,
           chloroplastic OS=Flaveria trinervia GN=PSAF PE=2 SV=1
          Length = 232

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 21/38 (55%), Positives = 28/38 (73%)
 Frame = +2

Query: 314 DIAGLTPSKDSKAYAKREEKEINKLAKRLDKYTPNSAP 427
           DI+GLTP K+SK +AKRE++ + KL   L  Y P+SAP
Sbjct: 79  DISGLTPCKESKQFAKREKQSLKKLESSLKLYAPDSAP 116


>sp|P12355|PSAF_SPIOL Photosystem I reaction center subunit III,
           chloroplastic OS=Spinacia oleracea GN=PSAF PE=1 SV=1
          Length = 231

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 21/40 (52%), Positives = 28/40 (70%)
 Frame = +2

Query: 308 LRDIAGLTPSKDSKAYAKREEKEINKLAKRLDKYTPNSAP 427
           + DIAGLTP K+SK +AKRE++ + KL   L  Y  +SAP
Sbjct: 76  MADIAGLTPCKESKQFAKREKQALKKLQASLKLYADDSAP 115


>sp|O78457|PSAF_GUITH Photosystem I reaction center subunit III
           OS=Guillardia theta GN=psaF PE=3 SV=1
          Length = 183

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 18/38 (47%), Positives = 25/38 (65%)
 Frame = +2

Query: 314 DIAGLTPSKDSKAYAKREEKEINKLAKRLDKYTPNSAP 427
           D+AGL P K+SK + +R +  + KL  RL KY PN+ P
Sbjct: 23  DVAGLVPCKNSKEFQRRLDSSVKKLESRLSKYEPNTPP 60


>sp|P51193|PSAF_PORPU Photosystem I reaction center subunit III
           OS=Porphyra purpurea GN=psaF PE=3 SV=1
          Length = 185

 Score = 38.9 bits (89), Expect = 0.009
 Identities = 18/38 (47%), Positives = 23/38 (60%)
 Frame = +2

Query: 314 DIAGLTPSKDSKAYAKREEKEINKLAKRLDKYTPNSAP 427
           ++AGL P KDS A+ KR    + KL  RL KY  N+ P
Sbjct: 25  EVAGLIPCKDSAAFNKRMVNSVKKLQARLAKYDANTPP 62


>sp|P48115|PSAF_CYAPA Photosystem I reaction center subunit III
           OS=Cyanophora paradoxa GN=psaF PE=3 SV=1
          Length = 186

 Score = 37.7 bits (86), Expect = 0.020
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +2

Query: 314 DIAGLTPSKDSKAYAKREEKEINKLAKRLDKYTPNSAP 427
           D+AGL P   S A+ +R +    +L  RL KY P SAP
Sbjct: 26  DVAGLIPCSQSDAFERRLKNTTQRLENRLKKYEPGSAP 63


>sp|Q1XDU4|PSAF_PORYE Photosystem I reaction center subunit III
           OS=Porphyra yezoensis GN=psaF PE=3 SV=1
          Length = 181

 Score = 37.4 bits (85), Expect = 0.026
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = +2

Query: 314 DIAGLTPSKDSKAYAKREEKEINKLAKRLDKYTPNSAP 427
           ++AGL P KDS A+ KR    + KL  RL KY  ++ P
Sbjct: 21  EVAGLVPCKDSAAFNKRMVNSVKKLQARLAKYDADTPP 58


>sp|Q9DH21|ORF23_TTVV1 Probable protein VP2 OS=Torque teno virus
           (strain VT416) GN=ORF2/3 PE=2 SV=1
          Length = 286

 Score = 33.1 bits (74), Expect = 0.47
 Identities = 20/55 (36%), Positives = 25/55 (45%)
 Frame = +3

Query: 132 KNSLYTGRADCSICEQGQGELRCKRAKQRH*GKRQANRHRPHPSCDSQHCTSSVS 296
           K   Y      S  E  +G+ R +R   R   K Q  RHRP PS  S  C++S S
Sbjct: 204 KKKAYFSPQSSSSDESPRGKTRSRRKAGR---KAQRKRHRPSPSSSSSSCSNSES 255
tr_hit_id A9NWN3
Definition tr|A9NWN3|A9NWN3_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 38
Score (bit) 50.8
E-value 6.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946006|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_C12, 5'
         (427 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NWN3|A9NWN3_PICSI Putative uncharacterized protein OS=Picea...    51   6e-09
tr|A9SHP6|A9SHP6_PHYPA Predicted protein OS=Physcomitrella paten...    52   3e-07
tr|Q9ZSU5|Q9ZSU5_ORYSA Photosystem-1 F subunit OS=Oryza sativa G...    54   4e-06
tr|Q8S7H8|Q8S7H8_ORYSJ cDNA clone:001-016-D02, full insert seque...    54   4e-06
tr|Q0DN30|Q0DN30_ORYSJ Os03g0778100 protein (Fragment) OS=Oryza ...    54   4e-06
tr|A2XMI1|A2XMI1_ORYSI Putative uncharacterized protein OS=Oryza...    54   4e-06
tr|B6SRI3|B6SRI3_MAIZE Photosystem I reaction center subunit III...    54   5e-06
tr|A9RNK7|A9RNK7_PHYPA Predicted protein (Fragment) OS=Physcomit...    54   5e-06
tr|A9TWD4|A9TWD4_PHYPA Predicted protein OS=Physcomitrella paten...    52   1e-05
tr|Q1WLU7|Q1WLU7_CHLIN Chloroplast photosystem I subunit F (Frag...    52   2e-05
tr|A9SUQ3|A9SUQ3_PHYPA Predicted protein (Fragment) OS=Physcomit...    52   2e-05
tr|A4RVV3|A4RVV3_OSTLU PsaF, PSI-F, subunit III, photosystem I p...    52   2e-05
tr|A9PI20|A9PI20_POPTR Putative uncharacterized protein OS=Popul...    51   3e-05
tr|A9NR55|A9NR55_PICSI Putative uncharacterized protein OS=Picea...    51   3e-05
tr|A8J4S1|A8J4S1_CHLRE Photosystem I reaction center subunit III...    51   3e-05
tr|Q01B61|Q01B61_OSTTA Photosystem I subunit III, chloroplast (I...    50   4e-05
tr|Q84QE7|Q84QE7_TOBAC Putative photosystem I subunit III OS=Nic...    49   1e-04
tr|B2XTX1|B2XTX1_HETA4 Photosystem I reaction center subunit III...    49   2e-04
tr|B2XTG5|B2XTG5_HETA2 Photosystem I reaction center subunit III...    49   2e-04
tr|Q9XQB4|Q9XQB4_PHAAU Photosystem I reaction center subunit III...    48   2e-04
tr|A7QCS6|A7QCS6_VITVI Chromosome undetermined scaffold_79, whol...    48   2e-04
tr|A5B2H3|A5B2H3_VITVI Putative uncharacterized protein OS=Vitis...    48   2e-04
tr|B7FF89|B7FF89_MEDTR Putative uncharacterized protein (Fragmen...    47   5e-04
tr|B7FH55|B7FH55_MEDTR Putative uncharacterized protein OS=Medic...    45   0.002
tr|A6MVU7|A6MVU7_RHDSA Photosystem I subunit III OS=Rhodomonas s...    39   0.13 
tr|Q4G3B9|Q4G3B9_EMIHU Photosystem I subunit III OS=Emiliania hu...    37   0.65 
tr|Q7XYL7|Q7XYL7_BIGNA Photosystem I protein PsaF OS=Bigelowiell...    36   1.1  
tr|B8HVK4|B8HVK4_9CHRO Photosystem I reaction center protein Psa...    34   3.2  

>tr|A9NWN3|A9NWN3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 253

 Score = 50.8 bits (120), Expect(2) = 6e-09
 Identities = 22/38 (57%), Positives = 29/38 (76%)
 Frame = +2

Query: 314 DIAGLTPSKDSKAYAKREEKEINKLAKRLDKYTPNSAP 427
           D++GLTP KDSKA+AKRE++ + KL   L  Y P+SAP
Sbjct: 93  DVSGLTPCKDSKAFAKREKQSLKKLENSLKPYAPDSAP 130



 Score = 32.3 bits (72), Expect(2) = 6e-09
 Identities = 19/64 (29%), Positives = 34/64 (53%)
 Frame = +1

Query: 49  AMASTITFTPSGLVSPLKALASYKSSFTRTHSTRGGLTAVFASKARVSCAASEQNRGIEG 228
           AMA   T+ P+GL  PL++ ++ KS+ + T +       +   K+R  C+ASE  +  + 
Sbjct: 6   AMAGVSTYVPTGLAKPLRSPSTSKSTLSSTFN-------LPHCKSRTVCSASEGGQEEKN 58

Query: 229 SGKQ 240
             K+
Sbjct: 59  KNKK 62


>tr|A9SHP6|A9SHP6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_130189 PE=4 SV=1
          Length = 240

 Score = 51.6 bits (122), Expect(2) = 3e-07
 Identities = 23/38 (60%), Positives = 30/38 (78%)
 Frame = +2

Query: 314 DIAGLTPSKDSKAYAKREEKEINKLAKRLDKYTPNSAP 427
           D+AGLTP K+SK +AKR+++EI KL  RL  Y P+SAP
Sbjct: 80  DVAGLTPCKESKGFAKRQKQEIKKLEGRLKLYAPDSAP 117



 Score = 25.8 bits (55), Expect(2) = 3e-07
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = +1

Query: 73  TPSGLVSPLKALASYKSSFTRTHSTRGGLTAVFASK--ARVSCAASEQN 213
           +P+ LVS    L+S KSSF    +TR    +VF     +R+ C+ASE++
Sbjct: 4   SPARLVSSFTPLSSSKSSFPA--ATR---ASVFVKNVASRIVCSASEES 47


>tr|Q9ZSU5|Q9ZSU5_ORYSA Photosystem-1 F subunit OS=Oryza sativa
           GN=PSI-F PE=2 SV=1
          Length = 236

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 25/38 (65%), Positives = 30/38 (78%)
 Frame = +2

Query: 314 DIAGLTPSKDSKAYAKREEKEINKLAKRLDKYTPNSAP 427
           DIAGLTP K+SKA+AKRE++ I KL   L KY P+SAP
Sbjct: 79  DIAGLTPCKESKAFAKREKQSIKKLQSSLKKYAPDSAP 116


>tr|Q8S7H8|Q8S7H8_ORYSJ cDNA clone:001-016-D02, full insert sequence
           OS=Oryza sativa subsp. japonica GN=OSJNBa0010I09.4 PE=2
           SV=1
          Length = 236

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 25/38 (65%), Positives = 30/38 (78%)
 Frame = +2

Query: 314 DIAGLTPSKDSKAYAKREEKEINKLAKRLDKYTPNSAP 427
           DIAGLTP K+SKA+AKRE++ I KL   L KY P+SAP
Sbjct: 79  DIAGLTPCKESKAFAKREKQSIKKLQSSLKKYAPDSAP 116


>tr|Q0DN30|Q0DN30_ORYSJ Os03g0778100 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os03g0778100 PE=4 SV=1
          Length = 258

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 25/38 (65%), Positives = 30/38 (78%)
 Frame = +2

Query: 314 DIAGLTPSKDSKAYAKREEKEINKLAKRLDKYTPNSAP 427
           DIAGLTP K+SKA+AKRE++ I KL   L KY P+SAP
Sbjct: 101 DIAGLTPCKESKAFAKREKQSIKKLQSSLKKYAPDSAP 138


>tr|A2XMI1|A2XMI1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_13733 PE=4 SV=1
          Length = 236

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 25/38 (65%), Positives = 30/38 (78%)
 Frame = +2

Query: 314 DIAGLTPSKDSKAYAKREEKEINKLAKRLDKYTPNSAP 427
           DIAGLTP K+SKA+AKRE++ I KL   L KY P+SAP
Sbjct: 79  DIAGLTPCKESKAFAKREKQSIKKLQSSLKKYAPDSAP 116


>tr|B6SRI3|B6SRI3_MAIZE Photosystem I reaction center subunit III
           OS=Zea mays PE=2 SV=1
          Length = 225

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 25/38 (65%), Positives = 29/38 (76%)
 Frame = +2

Query: 314 DIAGLTPSKDSKAYAKREEKEINKLAKRLDKYTPNSAP 427
           DIAGLTP K+SKA+AKRE+  I KL   L KY P+SAP
Sbjct: 67  DIAGLTPCKESKAFAKREKNSIKKLTASLKKYAPDSAP 104


>tr|A9RNK7|A9RNK7_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_47692 PE=4 SV=1
          Length = 187

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 24/38 (63%), Positives = 30/38 (78%)
 Frame = +2

Query: 314 DIAGLTPSKDSKAYAKREEKEINKLAKRLDKYTPNSAP 427
           D+AGLTP K+SK +AKRE++EI KL  RL  Y P+SAP
Sbjct: 32  DVAGLTPCKESKGFAKREKQEIKKLESRLKLYAPDSAP 69


>tr|A9TWD4|A9TWD4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_151795 PE=4 SV=1
          Length = 212

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 23/38 (60%), Positives = 30/38 (78%)
 Frame = +2

Query: 314 DIAGLTPSKDSKAYAKREEKEINKLAKRLDKYTPNSAP 427
           D+AGLTP K+SK +AKR+++EI KL  RL  Y P+SAP
Sbjct: 52  DVAGLTPCKESKGFAKRQKQEIKKLESRLKLYAPDSAP 89


>tr|Q1WLU7|Q1WLU7_CHLIN Chloroplast photosystem I subunit F
           (Fragment) OS=Chlamydomonas incerta GN=PsaF PE=2 SV=1
          Length = 215

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 25/40 (62%), Positives = 30/40 (75%)
 Frame = +2

Query: 308 LRDIAGLTPSKDSKAYAKREEKEINKLAKRLDKYTPNSAP 427
           + DIAGLTP  +SKAYAK E+KEI  L KRL +Y  +SAP
Sbjct: 49  MADIAGLTPCSESKAYAKLEKKEIKTLEKRLKQYEADSAP 88