NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946031
Clone id YMU02A01NGRL0011_D15
Library
Length 524
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0011_D15. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TATCGTAGCGGGTATAGTTTAGTGGTAAAAGTGTGACTCGTCTCGCAGTGATTTTGATAG
TTGAGGGATCGTATCTCGGCTAAATTAACTGAAAGAAAAAACTTTATCTTCGCAGAAAAT
ATGTGTTTTCTTATTATTTCTCCAAAATTAGAGGTAGATTAATCAATCTCGTCACTCATT
CATTTCAAGAACTAGGGAAGATAGTGACGAAGCAGAATTGTTTTGGTACCCCAAGAAATA
CTTGGTTTAATTTCTACTTCCTGGGAGATAAATAAAGAAAAAAATCTATGGGTAGACGTC
TAAGATAGCGGACTCATCGTCACTAAACCTCAGAGAATAAATCTGGGAAAGAAAGTTGGA
ATAAATAGATCCGGGTTTGTCAAGATTATTGAACATCTATTTGGTTGAACGGGATCCCTC
GTTTCAACAACTCGGTGAGATATATTTCCCTAAGGGTTTTTTCCTGAAAAAAAAAAAAAA
TAAAGGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTTGT
■■Homology search results ■■ -
sp_hit_id O43114
Definition sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Schizosaccharomyces pombe
Align length 57
Score (bit) 33.1
E-value 0.62
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946031|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_D15, 5'
         (466 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Sch...    33   0.62 
sp|A6TBC5|HIS7_KLEP7 Histidine biosynthesis bifunctional protein...    32   1.8  
sp|Q83R05|HIS7_SHIFL Histidine biosynthesis bifunctional protein...    30   4.0  
sp|P06987|HIS7_ECOLI Histidine biosynthesis bifunctional protein...    30   4.0  
sp|Q8FG50|HIS7_ECOL6 Histidine biosynthesis bifunctional protein...    30   4.0  
sp|Q9S5G5|HIS7_ECO57 Histidine biosynthesis bifunctional protein...    30   4.0  
sp|Q2NHQ1|HIS7_METST Imidazoleglycerol-phosphate dehydratase OS=...    29   8.9  

>sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5
           OS=Schizosaccharomyces pombe GN=orc5 PE=1 SV=2
          Length = 455

 Score = 33.1 bits (74), Expect = 0.62
 Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 8/57 (14%)
 Frame = +1

Query: 247 LISTSWEINKEKNLWVDV*DSGLIVTKPQRI--------NLGKKVGINRSGFVKIIE 393
           L+ T+++++KE+N+W+++ D   +     RI        ++  K GIN SGF+ ++E
Sbjct: 51  LLRTAFDLSKEENVWINLQDCFTVAHFWYRILIKVGVDKDIALKKGINISGFIYLLE 107


>sp|A6TBC5|HIS7_KLEP7 Histidine biosynthesis bifunctional protein
           hisB OS=Klebsiella pneumoniae subsp. pneumoniae (strain
           ATCC 700721 / MGH 78578) GN=hisB PE=3 SV=1
          Length = 355

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
 Frame = +1

Query: 265 EINKEKNLWVD----V*DSGLIVTKPQRINLGKKVGINRSGFV 381
           E+N   +L++D    V D+GL + +  ++ LG K GINR GFV
Sbjct: 217 EVNVGGDLYIDDHHTVEDTGLALGEALKLALGDKRGINRFGFV 259


>sp|Q83R05|HIS7_SHIFL Histidine biosynthesis bifunctional protein
           hisB OS=Shigella flexneri GN=hisB PE=3 SV=2
          Length = 355

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
 Frame = +1

Query: 265 EINKEKNLWVD----V*DSGLIVTKPQRINLGKKVGINRSGFV 381
           EIN + +L++D    V D+GL + +  +I LG K GI R GFV
Sbjct: 217 EINVKGDLYIDDHHTVEDTGLALGEALKIALGDKRGICRFGFV 259


>sp|P06987|HIS7_ECOLI Histidine biosynthesis bifunctional protein
           hisB OS=Escherichia coli (strain K12) GN=hisB PE=1 SV=1
          Length = 355

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
 Frame = +1

Query: 265 EINKEKNLWVD----V*DSGLIVTKPQRINLGKKVGINRSGFV 381
           EIN + +L++D    V D+GL + +  +I LG K GI R GFV
Sbjct: 217 EINVKGDLYIDDHHTVEDTGLALGEALKIALGDKRGICRFGFV 259


>sp|Q8FG50|HIS7_ECOL6 Histidine biosynthesis bifunctional protein
           hisB OS=Escherichia coli O6 GN=hisB PE=3 SV=2
          Length = 355

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
 Frame = +1

Query: 265 EINKEKNLWVD----V*DSGLIVTKPQRINLGKKVGINRSGFV 381
           EIN + +L++D    V D+GL + +  +I LG K GI R GFV
Sbjct: 217 EINVKGDLYIDDHHTVEDTGLALGEALKIALGDKRGICRFGFV 259


>sp|Q9S5G5|HIS7_ECO57 Histidine biosynthesis bifunctional protein
           hisB OS=Escherichia coli O157:H7 GN=hisB PE=1 SV=1
          Length = 355

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
 Frame = +1

Query: 265 EINKEKNLWVD----V*DSGLIVTKPQRINLGKKVGINRSGFV 381
           EIN + +L++D    V D+GL + +  +I LG K GI R GFV
Sbjct: 217 EINVKGDLYIDDHHTVEDTGLALGEALKIALGDKRGICRFGFV 259


>sp|Q2NHQ1|HIS7_METST Imidazoleglycerol-phosphate dehydratase
           OS=Methanosphaera stadtmanae (strain DSM 3091) GN=hisB
           PE=3 SV=1
          Length = 193

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
 Frame = +1

Query: 265 EINKEKNLWVD----V*DSGLIVTKPQRINLGKKVGINRSGF 378
           EIN + ++ VD    + D+GL++ K  R  LG K GINR G+
Sbjct: 54  EINVDGDIEVDDHHTIEDTGLLLGKCFREALGDKRGINRMGY 95
tr_hit_id A6D2J9
Definition tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio shilonii AK1
Align length 50
Score (bit) 35.0
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946031|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0011_D15, 5'
         (466 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibri...    35   1.8  
tr|A4WC71|A4WC71_ENT38 Imidazoleglycerol-phosphate dehydratase /...    33   7.2  

>tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio
           shilonii AK1 GN=VSAK1_01567 PE=4 SV=1
          Length = 319

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 16/50 (32%), Positives = 31/50 (62%)
 Frame = -3

Query: 188 LK*MSDEID*STSNFGEIIRKHIFSAKIKFFLSVNLAEIRSLNYQNHCET 39
           LK +++E+D ST +     ++++F A  +F+L VNL + R++  Q  C +
Sbjct: 234 LKQIANELDISTKSINLFFKEYLFIAPKRFYLLVNLFKFRNILIQGKCSS 283


>tr|A4WC71|A4WC71_ENT38 Imidazoleglycerol-phosphate dehydratase /
           histidinol-phosphate phosphatase OS=Enterobacter sp.
           (strain 638) GN=Ent638_2634 PE=4 SV=1
          Length = 355

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 4/43 (9%)
 Frame = +1

Query: 265 EINKEKNLWVD----V*DSGLIVTKPQRINLGKKVGINRSGFV 381
           EIN + +L++D    V D+GL + +  ++ LG K GINR GFV
Sbjct: 217 EINVKGDLYIDDHHTVEDTGLALGEALKLALGDKRGINRFGFV 259